jgi.p|Nanoce1779_2|522607, mRNA_825 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522607
Unique NamemRNA_825
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length168
Alignment locationscaffold_2:517440..517607 +

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Properties
Property NameValue
TranscriptId522693
TrackFilteredModels2
ProteinId522607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:517440..517607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522607gene_825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522607mRNA_825-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_825CDS_825Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_825 ID=mRNA_825|Name=jgi.p|Nanoce1779_2|522607|organism=Nannochloropsis oceanica|type=mRNA|length=168bp
ATGGGTCGCTTCGTGAAGCGCTTTATCGATCGGGAGCCCGTCGTGTCGTT
CAGCATGGGCATCGCGGTTTTTGGTCTGTCCTTGCCCTTTTGGGTGACCC
CCTTGCGGGAGTCCATGGGCTTCCAAACGGAGCAGTATTACTTGCCTACC
GAGCGGTCGAAAAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|522607

>mRNA_825-protein ID=mRNA_825-protein|Name=jgi.p|Nanoce1779_2|522607|organism=Nannochloropsis oceanica|type=polypeptide|length=56bp
MGRFVKRFIDREPVVSFSMGIAVFGLSLPFWVTPLRESMGFQTEQYYLPT
ERSKK*
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mRNA from alignment at scaffold_2:517440..517607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_825 ID=mRNA_825|Name=jgi.p|Nanoce1779_2|522607|organism=Nannochloropsis oceanica|type=mRNA|length=168bp|location=Sequence derived from alignment at scaffold_2:517440..517607+ (Nannochloropsis oceanica)
ATGGGTCGCTTCGTGAAGCGCTTTATCGATCGGGAGCCCGTCGTGTCGTT
CAGCATGGGCATCGCGGTTTTTGGTCTGTCCTTGCCCTTTTGGGTGACCC
CCTTGCGGGAGTCCATGGGCTTCCAAACGGAGCAGTATTACTTGCCTACC
GAGCGGTCGAAAAAGTGA
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Coding sequence (CDS) from alignment at scaffold_2:517440..517607+

>mRNA_825 ID=mRNA_825|Name=jgi.p|Nanoce1779_2|522607|organism=Nannochloropsis oceanica|type=CDS|length=168bp|location=Sequence derived from alignment at scaffold_2:517440..517607+ (Nannochloropsis oceanica)
ATGGGTCGCTTCGTGAAGCGCTTTATCGATCGGGAGCCCGTCGTGTCGTT
CAGCATGGGCATCGCGGTTTTTGGTCTGTCCTTGCCCTTTTGGGTGACCC
CCTTGCGGGAGTCCATGGGCTTCCAAACGGAGCAGTATTACTTGCCTACC
GAGCGGTCGAAAAAGTGA
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Synonyms
Publications