jgi.p|Nanoce1779_2|601290, mRNA_8248 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601290
Unique NamemRNA_8248
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length622
Alignment locationscaffold_23:179090..180003 -

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Properties
Property NameValue
TranscriptId601376
TrackFilteredModels2
ProteinId601290
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:179090..180003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601290gene_8248Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601290mRNA_8248-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8248CDS_8248Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8248 ID=mRNA_8248|Name=jgi.p|Nanoce1779_2|601290|organism=Nannochloropsis oceanica|type=mRNA|length=622bp
AGAGCGATATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCGGCC
GCCGCTGCTCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGCTCT
TGCTCCTGCGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGACAGC
CAAAGAAAGTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATA
GGGACCAAATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCC
GCTCGCCTTCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCT
TTCTGGGAGTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATT
ATATCTGACTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTT
GATGGCTGTGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGG
AAGGGCCGGGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAG
AAGTGAGCTGGGGGAGGGAGGAAATGAGGGAGGGCAGGAGAAAAAGGAGA
TGAAGATGTGGGAAAATAGATTTAATCTGGAGGGTGGGAGGATGGTATTG
TAAGATGGAAAGGGGGGGTGGG
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protein sequence of jgi.p|Nanoce1779_2|601290

>mRNA_8248-protein ID=mRNA_8248-protein|Name=jgi.p|Nanoce1779_2|601290|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MFAPLSLTLARRAAAAAPASTSLMMLRRPALAPAASAPLRRGISSGQPKK
VNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLG
VVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGP
GLTESFKSLWREEKK*
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mRNA from alignment at scaffold_23:179090..180003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8248 ID=mRNA_8248|Name=jgi.p|Nanoce1779_2|601290|organism=Nannochloropsis oceanica|type=mRNA|length=914bp|location=Sequence derived from alignment at scaffold_23:179090..180003- (Nannochloropsis oceanica)
AGAGCGATATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCGGCC
GCCGCTGCTCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGCTCT
TGCTCCTGCGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGACAGC
CAAAGAAAGGTACGTTGGCATTTTGGCAGGGGTAGGTGGGAAGGTGGCTG
CGGTAGTGGCCGAGGGAAGGGGCGAAAGAGTGATGCGTCATGGGCCTTGC
TTTTGGTGCAGGTGCTCTTGGCGAGTCGTCCACTTTCCGGTTACACAAGC
AACCACCTATCCACAGCGCAGGCGTATATGTGAGTGCGTGCTACGTCGGG
ATCATGTAGAAAAGATGGGACTCTGCTTTTATTAAAAAATCTTTCGCCAT
CTTTTCGCTCGCTCCCTCCCTCCCTTCCTCCCTTCATTTGCACCCATGCA
GTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGACCAA
ATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCGCCT
TCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTGGGA
GTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATCTGA
CTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGGCTG
TGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGGCCG
GGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTGAGC
TGGGGGAGGGAGGAAATGAGGGAGGGCAGGAGAAAAAGGAGATGAAGATG
TGGGAAAATAGATTTAATCTGGAGGGTGGGAGGATGGTATTGTAAGATGG
AAAGGGGGGGTGGG
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Coding sequence (CDS) from alignment at scaffold_23:179090..180003-

>mRNA_8248 ID=mRNA_8248|Name=jgi.p|Nanoce1779_2|601290|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_23:179090..180003- (Nannochloropsis oceanica)
TGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGACCAAA
TTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCGCCTT
CTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTGGGAG
TGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATCTGAC
TATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGGCTGT
GACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGGCCGG
GTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTGAATG
TTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCGGCCGCCGCTGCTCC
TGCCTCCACATCGCTGATGATGCTGCGTCGACCTGCTCTTGCTCCTGCGG
CTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGACAGCCAAAGAAAGTG
AACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGACCAAATT
TTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCGCCTTCT
TCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTGGGAGTG
GTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATCTGACTA
TGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGGCTGTGA
CGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGGCCGGGT
TTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTGAATGTT
TGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCGGCCGCCGCTGCTCCTG
CCTCCACATCGCTGATGATGCTGCGTCGACCTGCTCTTGCTCCTGCGGCT
TCCGCTCCCCTCCGACGAGGAATCAGCTCGGGACAGCCAAAGAAAG
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Synonyms
Publications