jgi.p|Nanoce1779_2|601278, mRNA_8244 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601278
Unique Name	mRNA_8244
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1957
Alignment location	scaffold_23:170370..172365 +

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Properties


Property Name	Value
TranscriptId	601364
Track	FilteredModels2
ProteinId	601278

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:170370..172365 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601278	gene_8244	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601278	mRNA_8244-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8244	CDS_8244	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:170370..172365+
coding sequence from alignment at scaffold_23:170370..172365+

mRNA sequence

>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Nanoce1779_2|601278|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
CAGCGACCAACAATGCAGCCGCCACAAAACATGAACGATATCCCGGAGGC
CACAGTCTTGTCTGGGCCTCAGATCCCTCCGGGTAACACCAGTCAACAAG
GCTCAATCCCTGCCGCCTACACCATAGCTCGTCCCGTTACCCATACTCCA
CCGCCACAACCGGGCTACATACATCCATACATGCACCAGCAGCAGCAGCA
ACAACAACAGCAGCAGCTGCCACAAGATGTTGTGATAGATGAAACGACGC
TGGCTGAATACATGGCGTCTCATGGAGGACAAGTGCCCCCCGCTCCCCCA
GGTGGGTCTTTCTTTTGTTGCGTGTTTGTGTAGGTGTATGTGTCTTTGTC
TCTGTGAATTTAGGCGCTCACATGTGCGCGTGCACTGTGGCATGAATGTT
GGAAAAGTACCACCTGTATTTGTATGTGTATATGTATATTCGCGTCTAGT
TGATTCATTGCCAGGTGCGAGGCTTATCGCTGCAAGCTGAACGAGGCTTG
GCATGCACATCGAGAAAGATGTCTCTTGGCCCGGTTATGTCAGGACATCA
GTGAGTTTGTCTCTTCTTCTGACTGCGTCAGGCTTGCCTTGTTCTCAAGG
GCGCTGAATATTACCTGAGATTCATGCCCGCTGGTCATAGTTGATGTTTT
CCCGCCGGCAATCTTGTGTGATCTTCCCTTGCACAGCAGCAGTTACAGCT
CATAAAAGTGATGATCTGGTAAAGCCTTTCTATACTTTATTAATTTATCC
GTTTATTCATTTCATAATTTTTCATTTATCAATGTGGGTGTGAAAGTAGA
GAGGGAAGAAAACAGTGATGAACGACATTCTTAACTTTATCAAGCTCAAC
AGTCGGATCTTCTTCTTGCGAGGACGCTGACGAGATTTTGTCATCTTCTA
AAGCTGAGTTTTCTATTCTCTCCCTCCAAATGATCGTGTATTTATGTTTG
CCGAAGTTTGGTTTTTAACAATCTTTTTCAAATGGTAAATCATTTTTATT
AATTTATTCATTTACTCATGAATAATTGAATTTCTGATGATTGATTTCTG
CCGCTATGAAAAATGACAGTTGCTTCACCTCTATGCCTCTCTGACTCACC
CACCTTCCCTCCCTCAACCCAACAGATTACATGCCCCTGGCCATCTGCTC
CTGCCTGTGCTGTTGGCCCATCTCCCTCATCGCCATATTCAATAGCCGGC
AAGTCCGTGTGTCCTACGCCCGGGGGCAGTACATGCACGCGTACCTCGCT
TCGAGACGTGCAAAGTCGCTGGCGCTGCTGTCGGTGTTCATGGGCACTAT
CTTATTGGTATGGTACTACATGATGATGCGGGGTAGGTAGAAAGAAACCA
ATAGGGCCTGGGGGTCGAGACCCTTTCCTCCCTTCACTCCTAGGGCTGCA
GAGACGCCCTCTCTTTCCCTGCTTCCCTCCGTATATCCACTCCTCCCCAA
GTGCTGGGTCGCGAGGAGCATTCCTTCCTTTTTGTATTCCCTCCCTCTCT
CCCTCCCGAATGATACGGTGTTGAGAGTTCGGTATCCTGCGTGATAGTGA
GAAAAAAGTACTGTAAGAAAAGCAGGAGGAGGGGCATTGCTGGGTGGGTC
GAGGGACCTAAAGTGTGTCTCCTCCCCTCCTCCCTCCATCTATGTATCCC
TGATCGTCACTGTTGCGCCTGGAGCAAACACCATCTGTCCAAGAGCAGAT
GGGAGTCGGCAGCTGCAACAAGAGCAGTAGCAGCCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGCACCAACCGCAGTTTATCAACAGTGTGAATACGAGTTGTGTG
TGTATGTATGTATTCGTAGTTCTTTTGTAATTGGTAGATTTAAGTGGGTG
TCTGTGTGTGATACGAGACAGGGAAATGAATGCATGGATATGCACTCCAA
AAAATCA

protein sequence of jgi.p|Nanoce1779_2|601278

>mRNA_8244-protein ID=mRNA_8244-protein|Name=jgi.p|Nanoce1779_2|601278|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MPLAICSCLCCWPISLIAIFNSRQVRVSYARGQYMHAYLASRRAKSLALL
SVFMGTILLVWYYMMMRGR*

mRNA from alignment at scaffold_23:170370..172365+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Nanoce1779_2|601278|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp|location=Sequence derived from alignment at scaffold_23:170370..172365+ (Nannochloropsis oceanica)
CAGCGACCAACAATGCAGCCGCCACAAAACATGAACGATATCCCGGAGGC
CACAGTCTTGTCTGGGCCTCAGATCCCTCCGGGTAACACCAGTCAACAAG
GCTCAATCCCTGCCGCCTACACCATAGCTCGTCCCGTTACCCATACTCCA
CCGCCACAACCGGGCTACATACATCCATACATGCACCAGCAGCAGCAGCA
ACAACAACAGCAGCAGCTGCCACAAGATGTTGTGATAGATGAAACGACGC
TGGCTGAATACATGGCGTCTCATGGAGGACAAGTGCCCCCCGCTCCCCCA
GGTGGGTCTTTCTTTTGTTGCGTGTTTGTGTAGGTGTATGTGTCTTTGTC
TCTGTGAATTTAGGCGCTCACATGTGCGCGTGCACTGTGGCATGAATGTT
GGAAAAGTACCACCTGTATTTGTATGTGTATATGTATATTCGCGTCTAGT
TGATTCATTGCCAGGTGCGAGGCTTATCGCTGCAAGCTGAACGAGGCTTG
GCATGCACATCGAGAAAGATGTCTCTTGGCCCGGTTATGTCAGGACATCA
GTGAGTTTGTCTCTTCTTCTGACTGCGTCAGGCTTGCCTTGTTCTCAAGG
GCGCTGAATATTACCTGAGATTCATGCCCGCTGGTCATAGTTGATGTTTT
CCCGCCGGCAATCTTGTGTGATCTTCCCTTGCACAGCAGCAGTTACAGCT
CATAAAAGTGATGATCTGGTAAAGCCTTTCTATACTTTATTAATTTATCC
GTTTATTCATTTCATAATTTTTCATTTATCAATGTGGGTGTGAAAGTAGA
GAGGGAAGAAAACAGTGATGAACGACATTCTTAACTTTATCAAGCTCAAC
AGTCGGATCTTCTTCTTGCGAGGACGCTGACGAGATTTTGTCATCTTCTA
AAGCTGAGTTTTCTATTCTCTCCCTCCAAATGATCGTGTATTTATGTTTG
CCGAAGTTTGGTTTTTAACAATCTTTTTCAAATGGTAAATCATTTTTATT
AATTTATTCATTTACTCATGAATAATTGAATTTCTGATGATTGATTTCTG
CCGCTATGAAAAATGACAGTTGCTTCACCTCTATGCCTCTCTGACTCACC
CACCTTCCCTCCCTCAACCCAACAGATTACATGCCCCTGGCCATCTGCTC
CTGCCTGTGCTGTTGGCCCATCTCCCTCATCGCCATATTCAATAGCCGGC
AAGTCCGTGTGTCCTACGCCCGGGGGCAGTACATGCACGCGTACCTCGCT
TCGAGACGTGCAAAGTCGCTGGCGCTGCTGTCGGTGTTCATGGGCACTAT
CTTATTGGTATGGTACTACATGATGATGCGGGGTAGGTAGAAAGAAACCA
ATAGGGCCTGGGGGTCGAGACCCTTTCCTCCCTTCACTCCTAGGGCTGCA
GAGACGCCCTCTCTTTCCCTGCTTCCCTCCGTATATCCACTCCTCCCCAA
GTGCTGGGTCGCGAGGAGCATTCCTTCCTTTTTGTATTCCCTCCCTCTCT
CCCTCCCGAATGATACGGTGTTGAGAGTTCGGTATCCTGCGTGATAGTGA
GAAAAAAGTACTGTAAGAAAAGCAGGAGGAGGGGCATTGCTGGGTGGGTC
GAGGGACCTAAAGTGTGTCTCCTCCCCTCCTCCCTCCATCTATGTATCCC
TGATCGTCACTGTTGCGCCTGGAGCAAACACCATCTGTCCAAGAGCAGAT
GGGAGTCGGCAGCTGCAACAAGAGCAGTAGCAGCCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGCGCCAGCAGCATCAGTATCAGCACTAGCATCAGCACCAGCAC
CAACCGCAGTTTATCAACAGTGTGAATACGAGTTGTGTGTGTATGTATGT
ATTCGTAGTTCTTTTGTAATTGGTAGATTTAAGTGGGTGTCTGTGTGTGA
TACGAGACAGGGAAATGAATGCATGGATATGCACTCCAAAAAATCA

Coding sequence (CDS) from alignment at scaffold_23:170370..172365+

>mRNA_8244 ID=mRNA_8244|Name=jgi.p|Nanoce1779_2|601278|organism=Nannochloropsis oceanica|type=CDS|length=210bp|location=Sequence derived from alignment at scaffold_23:170370..172365+ (Nannochloropsis oceanica)
ATGCCCCTGGCCATCTGCTCCTGCCTGTGCTGTTGGCCCATCTCCCTCAT
CGCCATATTCAATAGCCGGCAAGTCCGTGTGTCCTACGCCCGGGGGCAGT
ACATGCACGCGTACCTCGCTTCGAGACGTGCAAAGTCGCTGGCGCTGCTG
TCGGTGTTCATGGGCACTATCTTATTGGTATGGTACTACATGATGATGCG
GGGTAGGTAG

Synonyms

Publications