jgi.p|Nanoce1779_2|568326, mRNA_8243 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568326
Unique Name	mRNA_8243
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1038
Alignment location	scaffold_23:167667..169646 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568412
Track	FilteredModels2
ProteinId	568326

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:167667..169646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568326	gene_8243	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568326	mRNA_8243-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8243	CDS_8243	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:167667..169646+
coding sequence from alignment at scaffold_23:167667..169646+

mRNA sequence

>mRNA_8243 ID=mRNA_8243|Name=jgi.p|Nanoce1779_2|568326|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATGCATGCAATAATTCCGGGACTGGAGCAGAAGGCAGGACAGGGCGCGAA
AGAGGGAGGTGGAAGGAAGGAAGTAAGGCGGATGCTATCGGATGTGGTTA
CAGAGGAGCACGTGGCAGATATCATAAGTCGGGCGACAGGGATCCCTCTC
GGGAGTTTGTTGCAAGGGGAGAGCGATCGGTTGCTTAATATGGAGGAGAC
CCTGAAGGAGGGTGTAGTGGGCCAGGATCAGGCCATCAAGGCGATTGCCA
ATTGCGTCAGACTCTCACGCGCTGGCCTCCGTCCGCACGAGCGACCTTTG
GGTGTCTTCCTCTTTTTGGGCCCAACAGGGGTTGGCAAGACACACCTGAC
CAAGAAGGGCCGCACGGTTGATTTCCGCAACACCCTCATCATCATGACTA
GTAATCTGGGCGCGCAGTACTTAAGTGAGCTCCCGCCCGACCAGCCGTCC
TCTGTGGCCCGTGATGACGTCATGCGCGTCGTGCGCGCGACGTTCCCACC
GGAGTTTATTAACCGCATCGACAACGTCGTCCTCTTCAACCGACTGAAAC
GCACCAACATGGACCAAATCGTGAGACAACAGCTCGGCTCTCTTCGGTCC
CTCCTTCACGAGCGCGGTCTGGGACTTACGGTGGAGAGCTCTGTTGTCAG
CTTGCTGGCTGATCTGGGATATGATCCTGCCTATGGTGCCAGACCGTTGA
AAAGAACGATGCAAACGACTCTTTTGAATCCGTTAGCTACTTTGTTGCTC
GAGGGAAAGGCCAAGGCGGAAGATATGTTATGGTTGGTGAGGGTGAAGCG
GGCGGAAGTAAAGGAGGGGAGGGATACCATCTTGTTCGGACGGGGCGCGA
TTGGCGGGGGAGAGGAAGAGGGGGGGGAGGAGTGGGATGAGGGGGGTTCA
CAGGAGTTGATTTTGGGGGAGGACGTATTGGTGTGTCGGGTAGTCGAGGG
GGGATACATGGAAGGAGGGGAGAATGGTGGAGATGGGATTGAAAAGAGGG
GGGGGAAAGAGGACGAAGAGATGAGGGAGGTGGTTTAG

protein sequence of jgi.p|Nanoce1779_2|568326

>mRNA_8243-protein ID=mRNA_8243-protein|Name=jgi.p|Nanoce1779_2|568326|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MHAIIPGLEQKAGQGAKEGGGRKEVRRMLSDVVTEEHVADIISRATGIPL
GSLLQGESDRLLNMEETLKEGVVGQDQAIKAIANCVRLSRAGLRPHERPL
GVFLFLGPTGVGKTHLTKKGRTVDFRNTLIIMTSNLGAQYLSELPPDQPS
SVARDDVMRVVRATFPPEFINRIDNVVLFNRLKRTNMDQIVRQQLGSLRS
LLHERGLGLTVESSVVSLLADLGYDPAYGARPLKRTMQTTLLNPLATLLL
EGKAKAEDMLWLVRVKRAEVKEGRDTILFGRGAIGGGEEEGGEEWDEGGS
QELILGEDVLVCRVVEGGYMEGGENGGDGIEKRGGKEDEEMREVV*

mRNA from alignment at scaffold_23:167667..169646+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8243 ID=mRNA_8243|Name=jgi.p|Nanoce1779_2|568326|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_23:167667..169646+ (Nannochloropsis oceanica)
ATGCATGCAATAATTCCGGGACTGGAGCAGAAGGCAGGACAGGGCGCGAA
AGAGGGAGGTGGAAGGAAGGAAGTAAGGCGGATGCTATCGGATGTGGTTA
CAGAGGAGCACGTGGCAGATATCATAAGTCGGGCGACAGGGATCCCTCTC
GGGAGTTTGTTGCAAGGGGAGAGCGATCGGTTGCTTAATATGGAGGAGAC
CCTGAAGGAGGGTGTAGTGGGCCAGGATCAGGCCATCAAGGCGATTGCCA
ATTGCGTCAGGTGAGACGCCATGTCATTCCTTCCTTCTCTCTTTCGCTCC
CTCTGTCTATTTCACGCGGGGACCCCACTGCTCTGTCTCTCCACGCCACC
GCATGCAGGCAAAGCATATGAACGCTCACCTCCCCTCTATATCTTTGTCG
CTTATTCCATCCTTCATCTCTCCATCCCTCCCTCTCTCAGACTCTCACGC
GCTGGCCTCCGTCCGCACGAGCGACCTTTGGGTGTCTTCCTCTTTTTGGG
CCCAACAGGGGTTGGCAAGACACACCTGACCAAGAAGGTGTGTGAATTCC
TCTTCCAGGACGAGCGGGCGATGACTCGGTTGGACATGACGGAGTTCAGC
GAGAAGTTCACGGTGTCGCGGTTGATTGGCTCGCCGCCGGGGTATGTTGG
TTATGAGGTACGGAAGGGATGGATGGAGGGAGGGACGGAGAGAGGGAGGG
AGGGAGGTGTAACAATTGATTAAATGATAATTGTCACGTATTTACTCTTT
TGTTCTCCCTTTTCCCCTCCCTCCATCCCTCTCTCTCTCTCTACTCTCTT
TAGGAAGGGGGAGTCTTGACCGAGTCCATTCGCCGGAAGCCATATCAAGT
CCTGTTGCTGGATGAGTTTGAAAAGGCGCATCGCGAAGTAGGGAACCTTT
TGCTGCAGGTCTTTGACGACGGTCGCTTGACCGATTCTCAGGTAAAGAAA
TGTCGGCGTCCGTGTACAGGTTCTCTTTAGCTTCGATACTTCGTCTTCGT
TTTTCACGGCTTGGAGCATTTCTCTGAACGGTGGGGTCCTCTCTCTCATG
CTCTTCCCCTGCTCCCCCCCCCCGCCCCTCTTCCTCAGGGCCGCACGGTT
GATTTCCGCAACACCCTCATCATCATGACTAGTAATCTGGGCGCGCAGTA
CTTAAGTGAGCTCCCGCCCGACCAGCCGTCCTCTGTGGCCCGTGATGACG
TCATGCGCGTCGTGCGCGCGACGTTCCCACCGGAGTTTATTAACCGGTAG
GTGCTTCCCCCCTCCCTTCCGTGCGCGTTTATATATGGTGAAGAGACATT
CTTATTTGTTGGCCTGCTTTCAATGTTTGTGACCCGCGTGCAGCCACAAC
TCAGAACTCTTCAATTTCTTCGGTACCAGCGCGGCTTTGGCTTGAAAAGA
TGCAAACAACTAACCTCCCTTTTTCTGTATTTCCTCGTGTCCTATGAACC
AAAACAGCATCGACAACGTCGTCCTCTTCAACCGACTGAAACGCACCAAC
ATGGACCAAATCGTGAGACAACAGCTCGGCTCTCTTCGGTCCCTCCTTCA
CGAGCGCGGTCTGGGACTTACGGTGGAGAGCTCTGTTGTCAGCTTGCTGG
CTGATCTGGGATATGATCCTGCCTATGGTGCCAGACCGTTGAAAAGAACG
ATGCAAACGACTCTTTTGAATCCGTTAGCTACTTTGTTGCTCGAGGGAAA
GGCCAAGGCGGAAGATATGTTATGGTTGGTGAGGGTGAAGCGGGCGGAAG
TAAAGGAGGGGAGGGATACCATCTTGTTCGGACGGGGCGCGATTGGCGGG
GGAGAGGAAGAGGGGGGGGAGGAGTGGGATGAGGGGGGTTCACAGGAGTT
GATTTTGGGGGAGGACGTATTGGTGTGTCGGGTAGTCGAGGGGGGATACA
TGGAAGGAGGGGAGAATGGTGGAGATGGGATTGAAAAGAGGGGGGGGAAA
GAGGACGAAGAGATGAGGGAGGTGGTTTAG

Coding sequence (CDS) from alignment at scaffold_23:167667..169646+

>mRNA_8243 ID=mRNA_8243|Name=jgi.p|Nanoce1779_2|568326|organism=Nannochloropsis oceanica|type=CDS|length=4152bp|location=Sequence derived from alignment at scaffold_23:167667..169646+ (Nannochloropsis oceanica)
ATGCATGCAATAATTCCGGGACTGGAGCAGAAGGCAGGACAGGGCGCGAA
AGAGGGAGGTGGAAGGAAGGAAGTAAGGCGGATGCTATCGGATGTGGTTA
CAGAGGAGCACGTGGCAGATATCATAAGTCGGGCGACAGGGATCCCTCTC
GGGAGTTTGTTGCAAGGGGAGAGCGATCGGTTGCTTAATATGGAGGAGAC
CCTGAAGGAGGGTGTAGTGGGCCAGGATCAGGCCATCAAGGCGATTGCCA
ATTGCGTCAGACTCTCACGCGCTGGCCTCCGTCCGCACGAGCGACCTTTG
GGTGTCTTCCTCTTTTTGGGCCCAACAGGGGTTGGCAAGACACACCTGAC
CAAGAAGGGCCGCACGGTTGATTTCCGCAACACCCTCATCATCATGACTA
GTAATCTGGGCGCGCAGTACTTAAGTGAGCTCCCGCCCGACCAGCCGTCC
TCTGTGGCCCGTGATGACGTCATGCGCGTCGTGCGCGCGACGTTCCCACC
GGAGTTTATTAACCGCATCGACAACGTCGTCCTCTTCAACCGACTGAAAC
GCACCAACATGGACCAAATCGTGAGACAACAGCTCGGCTCTCTTCGGTCC
CTCCTTCACGAGCGCGGTCTGGGACTTACGGTGGAGAGCTCTGTTGTCAG
CTTGCTGGCTGATCTGGGATATGATCCTGCCTATGGTGCCAGACCGTTGA
AAAGAACGATGCAAACGACTCTTTTGAATCCGTTAGCTACTTTGTTGCTC
GAGGGAAAGGCCAAGGCGGAAGATATGTTATGGTTGGTGAGGGTGAAGCG
GGCGGAAGTAAAGGAGGGGAGGGATACCATCTTGTTCGGACGGGGCGCGA
TTGGCGGGGGAGAGGAAGAGGGGGGGGAGGAGTGGGATGAGGGGGGTTCA
CAGGAGTTGATTTTGGGGGAGGACGTATTGGTGTGTCGGGTAGTCGAGGG
GGGATACATGGAAGGAGGGGAGAATGGTGGAGATGGGATTGAAAAGAGGG
GGGGGAAAGAGGACGAAGAGATGAGGGAGGTGGTTTAGATGCATGCAATA
ATTCCGGGACTGGAGCAGAAGGCAGGACAGGGCGCGAAAGAGGGAGGTGG
AAGGAAGGAAGTAAGGCGGATGCTATCGGATGTGGTTACAGAGGAGCACG
TGGCAGATATCATAAGTCGGGCGACAGGGATCCCTCTCGGGAGTTTGTTG
CAAGGGGAGAGCGATCGGTTGCTTAATATGGAGGAGACCCTGAAGGAGGG
TGTAGTGGGCCAGGATCAGGCCATCAAGGCGATTGCCAATTGCGTCAGAC
TCTCACGCGCTGGCCTCCGTCCGCACGAGCGACCTTTGGGTGTCTTCCTC
TTTTTGGGCCCAACAGGGGTTGGCAAGACACACCTGACCAAGAAGGGCCG
CACGGTTGATTTCCGCAACACCCTCATCATCATGACTAGTAATCTGGGCG
CGCAGTACTTAAGTGAGCTCCCGCCCGACCAGCCGTCCTCTGTGGCCCGT
GATGACGTCATGCGCGTCGTGCGCGCGACGTTCCCACCGGAGTTTATTAA
CCGCATCGACAACGTCGTCCTCTTCAACCGACTGAAACGCACCAACATGG
ACCAAATCGTGAGACAACAGCTCGGCTCTCTTCGGTCCCTCCTTCACGAG
CGCGGTCTGGGACTTACGGTGGAGAGCTCTGTTGTCAGCTTGCTGGCTGA
TCTGGGATATGATCCTGCCTATGGTGCCAGACCGTTGAAAAGAACGATGC
AAACGACTCTTTTGAATCCGTTAGCTACTTTGTTGCTCGAGGGAAAGGCC
AAGGCGGAAGATATGTTATGGTTGGTGAGGGTGAAGCGGGCGGAAGTAAA
GGAGGGGAGGGATACCATCTTGTTCGGACGGGGCGCGATTGGCGGGGGAG
AGGAAGAGGGGGGGGAGGAGTGGGATGAGGGGGGTTCACAGGAGTTGATT
TTGGGGGAGGACGTATTGGTGTGTCGGGTAGTCGAGGGGGGATACATGGA
AGGAGGGGAGAATGGTGGAGATGGGATTGAAAAGAGGGGGGGGAAAGAGG
ACGAAGAGATGAGGGAGGTGGTTTAGATGCATGCAATAATTCCGGGACTG
GAGCAGAAGGCAGGACAGGGCGCGAAAGAGGGAGGTGGAAGGAAGGAAGT
AAGGCGGATGCTATCGGATGTGGTTACAGAGGAGCACGTGGCAGATATCA
TAAGTCGGGCGACAGGGATCCCTCTCGGGAGTTTGTTGCAAGGGGAGAGC
GATCGGTTGCTTAATATGGAGGAGACCCTGAAGGAGGGTGTAGTGGGCCA
GGATCAGGCCATCAAGGCGATTGCCAATTGCGTCAGACTCTCACGCGCTG
GCCTCCGTCCGCACGAGCGACCTTTGGGTGTCTTCCTCTTTTTGGGCCCA
ACAGGGGTTGGCAAGACACACCTGACCAAGAAGGGCCGCACGGTTGATTT
CCGCAACACCCTCATCATCATGACTAGTAATCTGGGCGCGCAGTACTTAA
GTGAGCTCCCGCCCGACCAGCCGTCCTCTGTGGCCCGTGATGACGTCATG
CGCGTCGTGCGCGCGACGTTCCCACCGGAGTTTATTAACCGCATCGACAA
CGTCGTCCTCTTCAACCGACTGAAACGCACCAACATGGACCAAATCGTGA
GACAACAGCTCGGCTCTCTTCGGTCCCTCCTTCACGAGCGCGGTCTGGGA
CTTACGGTGGAGAGCTCTGTTGTCAGCTTGCTGGCTGATCTGGGATATGA
TCCTGCCTATGGTGCCAGACCGTTGAAAAGAACGATGCAAACGACTCTTT
TGAATCCGTTAGCTACTTTGTTGCTCGAGGGAAAGGCCAAGGCGGAAGAT
ATGTTATGGTTGGTGAGGGTGAAGCGGGCGGAAGTAAAGGAGGGGAGGGA
TACCATCTTGTTCGGACGGGGCGCGATTGGCGGGGGAGAGGAAGAGGGGG
GGGAGGAGTGGGATGAGGGGGGTTCACAGGAGTTGATTTTGGGGGAGGAC
GTATTGGTGTGTCGGGTAGTCGAGGGGGGATACATGGAAGGAGGGGAGAA
TGGTGGAGATGGGATTGAAAAGAGGGGGGGGAAAGAGGACGAAGAGATGA
GGGAGGTGGTTTAGATGCATGCAATAATTCCGGGACTGGAGCAGAAGGCA
GGACAGGGCGCGAAAGAGGGAGGTGGAAGGAAGGAAGTAAGGCGGATGCT
ATCGGATGTGGTTACAGAGGAGCACGTGGCAGATATCATAAGTCGGGCGA
CAGGGATCCCTCTCGGGAGTTTGTTGCAAGGGGAGAGCGATCGGTTGCTT
AATATGGAGGAGACCCTGAAGGAGGGTGTAGTGGGCCAGGATCAGGCCAT
CAAGGCGATTGCCAATTGCGTCAGACTCTCACGCGCTGGCCTCCGTCCGC
ACGAGCGACCTTTGGGTGTCTTCCTCTTTTTGGGCCCAACAGGGGTTGGC
AAGACACACCTGACCAAGAAGGGCCGCACGGTTGATTTCCGCAACACCCT
CATCATCATGACTAGTAATCTGGGCGCGCAGTACTTAAGTGAGCTCCCGC
CCGACCAGCCGTCCTCTGTGGCCCGTGATGACGTCATGCGCGTCGTGCGC
GCGACGTTCCCACCGGAGTTTATTAACCGCATCGACAACGTCGTCCTCTT
CAACCGACTGAAACGCACCAACATGGACCAAATCGTGAGACAACAGCTCG
GCTCTCTTCGGTCCCTCCTTCACGAGCGCGGTCTGGGACTTACGGTGGAG
AGCTCTGTTGTCAGCTTGCTGGCTGATCTGGGATATGATCCTGCCTATGG
TGCCAGACCGTTGAAAAGAACGATGCAAACGACTCTTTTGAATCCGTTAG
CTACTTTGTTGCTCGAGGGAAAGGCCAAGGCGGAAGATATGTTATGGTTG
GTGAGGGTGAAGCGGGCGGAAGTAAAGGAGGGGAGGGATACCATCTTGTT
CGGACGGGGCGCGATTGGCGGGGGAGAGGAAGAGGGGGGGGAGGAGTGGG
ATGAGGGGGGTTCACAGGAGTTGATTTTGGGGGAGGACGTATTGGTGTGT
CGGGTAGTCGAGGGGGGATACATGGAAGGAGGGGAGAATGGTGGAGATGG
GATTGAAAAGAGGGGGGGGAAAGAGGACGAAGAGATGAGGGAGGTGGTTT
AG

Synonyms

Publications