jgi.p|Nanoce1779_2|559272, mRNA_8240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559272
Unique Name	mRNA_8240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1233
Alignment location	scaffold_23:160014..161495 +

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Properties


Property Name	Value
TranscriptId	559358
Track	FilteredModels2
ProteinId	559272

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:160014..161495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559272	gene_8240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559272	mRNA_8240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8240	CDS_8240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:160014..161495+
coding sequence from alignment at scaffold_23:160014..161495+

mRNA sequence

>mRNA_8240 ID=mRNA_8240|Name=jgi.p|Nanoce1779_2|559272|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
AGGCTGACGACTGTGTTGATGGCGACAGACGTGGGTGCCATGCCAGACAA
GGCGACTGACAATGCATTTCCCGACGGGAGCGGCACGCCCCTGGAGCTCG
TCCGTGCTTCCACTGCTCGTGTCGTTGCCCAAGCCAGCCACGTTCACATT
GACCATCAAGCGCTCTTGGACCTGACCCACGCCCTGTCGTCCGCCTATCG
AAGCACTCCAATCGCGTGGGATGAAAGCGGATGGCATTATCAAACGGATG
CTGCCGTTGCCGGGCCGTTGACCTGCCAGTACATCCTTGTCTTGGACACC
CTGAACTTCTGTTTTTGGCCGACCCCGGGGTTGGAGTATGAACATTTGGC
AAGGGGGTTGAAAAGGGCCTTGGAGAGTGATGAACATGCTTTCGGTGCGG
AGAGACTGATGAGGATCACCCCCGAGGAGGTGGCGGGATGGATCGATTTC
TCACCTATCTCTGGCGATGCTGCAGCTGCTCCTACTGCTGTTGCTTCTGG
TAGTGAAGGTCGAGGAGGAGTTGGAGTTGAAGCCTTTTCACCTTCGCCCC
CGACCAGCAACAGCTGCAACAATAGCAGTAGCAGCGCCACGGTCACATCC
TCCTCCCTCCTTCCCTCCTCCCCAACCCTCCCCCTTCTCCTTGAACGCAC
CCGCAAACTCCAGGAGGTGGGCCGTGTCCTCCTCCGCCACTTTCAAGGCC
TTGCGTCCAACTTGGTTCTAGAAAGTCACCACTCCGCCGTCGAGCTCGTC
AGGCTCATGACAGCCTATTTCCCTTCTTTCCGTGACGCGTCCCTGTACCG
CGGAGAACTCATTTTTTTCTACAAACGGGCCCAAATTTTCGTAGGGGACG
TGTGGGCTGCGTATGGGAAACAGACGGAGAGGTCTCATCCTTATTCTTTT
AAGGACATGGAGCAGTTAACGATGTTTGCCGATTATAGAGTGCCACAGAT
CTTGCGAGCGCGGGGCGTTTTAAATTATAGTCCTGCATTGGAGAGGAAGA
TAGATACTAAGGAAGAGCTCTCAGCGGGTTCTGAGGAAGAAGTCGAAATC
CGCGCGGCAACTGTTCAGGCTGTGGAGCAAATAATGACGACATGGAACGA
GGGAGGGAAGGAGGGGGGGAGGGAGGGAGGGAGGGTGATGAGTGTGGAGG
TGGATTGGTTGTTGTGGCAGGAGGGGGAAAAGGCGAAAGAGGAGCTGCCG
CCGCACCACCGGACGCTAACTATCTTTTATTAG

protein sequence of jgi.p|Nanoce1779_2|559272

>mRNA_8240-protein ID=mRNA_8240-protein|Name=jgi.p|Nanoce1779_2|559272|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MATDVGAMPDKATDNAFPDGSGTPLELVRASTARVVAQASHVHIDHQALL
DLTHALSSAYRSTPIAWDESGWHYQTDAAVAGPLTCQYILVLDTLNFCFW
PTPGLEYEHLARGLKRALESDEHAFGAERLMRITPEEVAGWIDFSPISGD
AAAAPTAVASGSEGRGGVGVEAFSPSPPTSNSCNNSSSSATVTSSSLLPS
SPTLPLLLERTRKLQEVGRVLLRHFQGLASNLVLESHHSAVELVRLMTAY
FPSFRDASLYRGELIFFYKRAQIFVGDVWAAYGKQTERSHPYSFKDMEQL
TMFADYRVPQILRARGVLNYSPALERKIDTKEELSAGSEEEVEIRAATVQ
AVEQIMTTWNEGGKEGGREGGRVMSVEVDWLLWQEGEKAKEELPPHHRTL
TIFY*

mRNA from alignment at scaffold_23:160014..161495+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8240 ID=mRNA_8240|Name=jgi.p|Nanoce1779_2|559272|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_23:160014..161495+ (Nannochloropsis oceanica)
AGGCTGACGACTGTGTTGATGGCGACAGACGTGGGTGCCATGCCAGACAA
GGCGACTGACAATGCATTTCCCGACGGGAGCGGCACGGTAAGCTCCATCG
AACACGCCCCGACAACCTCCCCTCTTTCCCACCCATACCCTACATACACC
ACATATAACTTACACTACTACACTTACACTACTACACTACGCTTACTACA
CTACCAGCCCCTGGAGCTCGTCCGTGCTTCCACTGCTCGTGTCGTTGCCC
AAGCCAGCCACGTTCACATTGACCATCAAGCGCTCTTGGACCTGACCCAC
GCCCTGTCGTCCGCCTATCGAAGCACTCCAATCGCGTGGGATGAAAGCGG
ATGGCATTATCAAACGGATGCTGCCGTTGCCGGGCCGTTGACCTGCCAGT
ACATCCTTGTCTTGGACACCCTGAACTTCTGTTTTTGGCCGACCCCGGGG
TTGGAGTATGAACATTTGGCAAGGGGGTTGAAAAGGGCCTTGGAGAGTGA
TGAACATGCTTTCGGTGCGGAGAGACTGATGAGGATCACCCCCGAGGAGG
TGGCGGGATGGATCGATTTCTCACCTATCTCTGGCGATGCTGCAGCTGCT
CCTACTGCTGTTGCTTCTGGTAGTGAAGGTCGAGGAGGAGTTGGAGTTGA
AGCCTTTTCACCTTCGCCCCCGACCAGCAACAGCTGCAACAATAGCAGTA
GCAGCGCCACGGTCACATCCTCCTCCCTCCTTCCCTCCTCCCCAACCCTC
CCCCTTCTCCTTGAACGCACCCGCAAACTCCAGGAGGTGGGCCGTGTCCT
CCTCCGCCACTTTCAAGGCCTTGCGTCCAACTTGGTTCTAGAAAGTCACC
ACTCCGCCGTCGAGCTCGTCAGGCTCATGACAGCCTATTTCCCTTCTTTC
CGTGACGCGTCCCTGTACCGCGGAGAACTCATTTTTTTCTACAAACGGGC
CCAAATTTTCGTAGGGGACGTGTGGGCTGCGTATGGGAAACAGACGGAGA
GGTCTCATCCTTATTCTTTTAAGGACATGGAGCAGTTAACGATGTTTGCC
GATTATAGAGTGCCACAGGTAGGGGAAGGAGGGAGAGAAGGAGGGGTGGA
GGGATAGAGGGAGAGAGGGGCGGAGAGGATAGTCATTTATACGTCGGCGA
AGGCTTTCTAATTATTTGATGTTTTGTGTGATTCATATTTAACGCAGATC
TTGCGAGCGCGGGGCGTTTTAAATTATAGTCCTGCATTGGAGAGGAAGAT
AGATACTAAGGAAGAGCTCTCAGCGGGTTCTGAGGAAGAAGTCGAAATCC
GCGCGGCAACTGTTCAGGCTGTGGAGCAAATAATGACGACATGGAACGAG
GGAGGGAAGGAGGGGGGGAGGGAGGGAGGGAGGGTGATGAGTGTGGAGGT
GGATTGGTTGTTGTGGCAGGAGGGGGAAAAGGCGAAAGAGGAGCTGCCGC
CGCACCACCGGACGCTAACTATCTTTTATTAG

Coding sequence (CDS) from alignment at scaffold_23:160014..161495+

>mRNA_8240 ID=mRNA_8240|Name=jgi.p|Nanoce1779_2|559272|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_23:160014..161495+ (Nannochloropsis oceanica)
ATGGCGACAGACGTGGGTGCCATGCCAGACAAGGCGACTGACAATGCATT
TCCCGACGGGAGCGGCACGCCCCTGGAGCTCGTCCGTGCTTCCACTGCTC
GTGTCGTTGCCCAAGCCAGCCACGTTCACATTGACCATCAAGCGCTCTTG
GACCTGACCCACGCCCTGTCGTCCGCCTATCGAAGCACTCCAATCGCGTG
GGATGAAAGCGGATGGCATTATCAAACGGATGCTGCCGTTGCCGGGCCGT
TGACCTGCCAGTACATCCTTGTCTTGGACACCCTGAACTTCTGTTTTTGG
CCGACCCCGGGGTTGGAGTATGAACATTTGGCAAGGGGGTTGAAAAGGGC
CTTGGAGAGTGATGAACATGCTTTCGGTGCGGAGAGACTGATGAGGATCA
CCCCCGAGGAGGTGGCGGGATGGATCGATTTCTCACCTATCTCTGGCGAT
GCTGCAGCTGCTCCTACTGCTGTTGCTTCTGGTAGTGAAGGTCGAGGAGG
AGTTGGAGTTGAAGCCTTTTCACCTTCGCCCCCGACCAGCAACAGCTGCA
ACAATAGCAGTAGCAGCGCCACGGTCACATCCTCCTCCCTCCTTCCCTCC
TCCCCAACCCTCCCCCTTCTCCTTGAACGCACCCGCAAACTCCAGGAGGT
GGGCCGTGTCCTCCTCCGCCACTTTCAAGGCCTTGCGTCCAACTTGGTTC
TAGAAAGTCACCACTCCGCCGTCGAGCTCGTCAGGCTCATGACAGCCTAT
TTCCCTTCTTTCCGTGACGCGTCCCTGTACCGCGGAGAACTCATTTTTTT
CTACAAACGGGCCCAAATTTTCGTAGGGGACGTGTGGGCTGCGTATGGGA
AACAGACGGAGAGGTCTCATCCTTATTCTTTTAAGGACATGGAGCAGTTA
ACGATGTTTGCCGATTATAGAGTGCCACAGATCTTGCGAGCGCGGGGCGT
TTTAAATTATAGTCCTGCATTGGAGAGGAAGATAGATACTAAGGAAGAGC
TCTCAGCGGGTTCTGAGGAAGAAGTCGAAATCCGCGCGGCAACTGTTCAG
GCTGTGGAGCAAATAATGACGACATGGAACGAGGGAGGGAAGGAGGGGGG
GAGGGAGGGAGGGAGGGTGATGAGTGTGGAGGTGGATTGGTTGTTGTGGC
AGGAGGGGGAAAAGGCGAAAGAGGAGCTGCCGCCGCACCACCGGACGCTA
ACTATCTTTTATTAGATGGCGACAGACGTGGGTGCCATGCCAGACAAGGC
GACTGACAATGCATTTCCCGACGGGAGCGGCACGCCCCTGGAGCTCGTCC
GTGCTTCCACTGCTCGTGTCGTTGCCCAAGCCAGCCACGTTCACATTGAC
CATCAAGCGCTCTTGGACCTGACCCACGCCCTGTCGTCCGCCTATCGAAG
CACTCCAATCGCGTGGGATGAAAGCGGATGGCATTATCAAACGGATGCTG
CCGTTGCCGGGCCGTTGACCTGCCAGTACATCCTTGTCTTGGACACCCTG
AACTTCTGTTTTTGGCCGACCCCGGGGTTGGAGTATGAACATTTGGCAAG
GGGGTTGAAAAGGGCCTTGGAGAGTGATGAACATGCTTTCGGTGCGGAGA
GACTGATGAGGATCACCCCCGAGGAGGTGGCGGGATGGATCGATTTCTCA
CCTATCTCTGGCGATGCTGCAGCTGCTCCTACTGCTGTTGCTTCTGGTAG
TGAAGGTCGAGGAGGAGTTGGAGTTGAAGCCTTTTCACCTTCGCCCCCGA
CCAGCAACAGCTGCAACAATAGCAGTAGCAGCGCCACGGTCACATCCTCC
TCCCTCCTTCCCTCCTCCCCAACCCTCCCCCTTCTCCTTGAACGCACCCG
CAAACTCCAGGAGGTGGGCCGTGTCCTCCTCCGCCACTTTCAAGGCCTTG
CGTCCAACTTGGTTCTAGAAAGTCACCACTCCGCCGTCGAGCTCGTCAGG
CTCATGACAGCCTATTTCCCTTCTTTCCGTGACGCGTCCCTGTACCGCGG
AGAACTCATTTTTTTCTACAAACGGGCCCAAATTTTCGTAGGGGACGTGT
GGGCTGCGTATGGGAAACAGACGGAGAGGTCTCATCCTTATTCTTTTAAG
GACATGGAGCAGTTAACGATGTTTGCCGATTATAGAGTGCCACAGATCTT
GCGAGCGCGGGGCGTTTTAAATTATAGTCCTGCATTGGAGAGGAAGATAG
ATACTAAGGAAGAGCTCTCAGCGGGTTCTGAGGAAGAAGTCGAAATCCGC
GCGGCAACTGTTCAGGCTGTGGAGCAAATAATGACGACATGGAACGAGGG
AGGGAAGGAGGGGGGGAGGGAGGGAGGGAGGGTGATGAGTGTGGAGGTGG
ATTGGTTGTTGTGGCAGGAGGGGGAAAAGGCGAAAGAGGAGCTGCCGCCG
CACCACCGGACGCTAACTATCTTTTATTAGATGGCGACAGACGTGGGTGC
CATGCCAGACAAGGCGACTGACAATGCATTTCCCGACGGGAGCGGCACGC
CCCTGGAGCTCGTCCGTGCTTCCACTGCTCGTGTCGTTGCCCAAGCCAGC
CACGTTCACATTGACCATCAAGCGCTCTTGGACCTGACCCACGCCCTGTC
GTCCGCCTATCGAAGCACTCCAATCGCGTGGGATGAAAGCGGATGGCATT
ATCAAACGGATGCTGCCGTTGCCGGGCCGTTGACCTGCCAGTACATCCTT
GTCTTGGACACCCTGAACTTCTGTTTTTGGCCGACCCCGGGGTTGGAGTA
TGAACATTTGGCAAGGGGGTTGAAAAGGGCCTTGGAGAGTGATGAACATG
CTTTCGGTGCGGAGAGACTGATGAGGATCACCCCCGAGGAGGTGGCGGGA
TGGATCGATTTCTCACCTATCTCTGGCGATGCTGCAGCTGCTCCTACTGC
TGTTGCTTCTGGTAGTGAAGGTCGAGGAGGAGTTGGAGTTGAAGCCTTTT
CACCTTCGCCCCCGACCAGCAACAGCTGCAACAATAGCAGTAGCAGCGCC
ACGGTCACATCCTCCTCCCTCCTTCCCTCCTCCCCAACCCTCCCCCTTCT
CCTTGAACGCACCCGCAAACTCCAGGAGGTGGGCCGTGTCCTCCTCCGCC
ACTTTCAAGGCCTTGCGTCCAACTTGGTTCTAGAAAGTCACCACTCCGCC
GTCGAGCTCGTCAGGCTCATGACAGCCTATTTCCCTTCTTTCCGTGACGC
GTCCCTGTACCGCGGAGAACTCATTTTTTTCTACAAACGGGCCCAAATTT
TCGTAGGGGACGTGTGGGCTGCGTATGGGAAACAGACGGAGAGGTCTCAT
CCTTATTCTTTTAAGGACATGGAGCAGTTAACGATGTTTGCCGATTATAG
AGTGCCACAGATCTTGCGAGCGCGGGGCGTTTTAAATTATAGTCCTGCAT
TGGAGAGGAAGATAGATACTAAGGAAGAGCTCTCAGCGGGTTCTGAGGAA
GAAGTCGAAATCCGCGCGGCAACTGTTCAGGCTGTGGAGCAAATAATGAC
GACATGGAACGAGGGAGGGAAGGAGGGGGGGAGGGAGGGAGGGAGGGTGA
TGAGTGTGGAGGTGGATTGGTTGTTGTGGCAGGAGGGGGAAAAGGCGAAA
GAGGAGCTGCCGCCGCACCACCGGACGCTAACTATCTTTTATTAG

Synonyms

Publications