jgi.p|Nanoce1779_2|187408, mRNA_8238 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|187408
Unique NamemRNA_8238
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_23:151376..152538 -

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Properties
Property NameValue
TranscriptId187494
TrackFilteredModels2
ProteinId187408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:151376..152538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|187408gene_8238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|187408mRNA_8238-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8238CDS_8238Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8238 ID=mRNA_8238|Name=jgi.p|Nanoce1779_2|187408|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
CTCGGGGTCTCGTCGTTGTTACGGCACCACTTTACTTCTTTTCAGCGACG
ACGTCCTCGTAATTCGCGCTCCGACTTCTCTTATCCTTTGAACTCAAACA
AAAAAAATAACCGCAGGGCAAAATCCCAATATAAATTTTGACTGCCAAAA
AAAAGCCCTTGATGTTAGTTTATCCATGACCGTATCTCACAAATCATTGC
ATCGCAAAGACTTTAGAATAATTGTGAGGTTGGCTTTTTGCCTGCCTAGC
ACAACAAGCGAAGGGGCGTGAGATTCGATCCTTCAAGTGTGCTTCCCTTG
CTGCATGCTGCCCACTCAAGTAGAGGGCATGCCGTCCGTAGGGGCTATCT
CGCCTCTTATCACATACAGGGATCATACGTGGTTTGCTTAATTCACCGAC
CTTGTCTACCAAGTGGCAGTCTGCATGAAATGCATCTCCTGTCTGAGATG
GTTCCTGCACTGCCCGTACAAAACCTCTGAACATCTTGTCTATATATATA
TTCTTTTTGGGGGGCCTTGTCATGCCCCCTGGCGTCGTCATCTATTAAAG
GGTCGCCAATCAAGCAACGGGTCGCCTTTCCCACGTCCGCGTTGTTTTTG
TTCACAAACGCAAGAGACTCTATGTATGTCGGTGTGCTTTTGTCCACGAG
TTGCACTTGACGTCCATTGCATAGCGCCGAACAGTCTCAAGTTCAAACTC
CCAACATCAAGTGTCGAGGATGGCAAGTACGTGCGTGCCTTGTCCTCTCC
AATACCTCCGTACAACCATCGTCCTTTGGCGCTTGACCTTAACCTATTCA
GACATATACCCTTGTCTCCTTGTCTTAGAACCTTGAGCGTGGGCCGCGGC
CTTTTGTATTCCGGTCGCCCTCTTTTTGTTCTGCTTCCTCGGTTGATGCC
CGACCGACAGGCGACACCCATTCTGCAAGTGCTTAAGGGAAACGACATCC
TTTTTCCCATTAAAGCCCGTCTGTTTGTATGCCCTACATTCTCACGCACG
CTCTCCTTGTCGAAAGAGGCCCTGTGCCTGTGCTGGACACTGCTGTGGCA
CTGGCCCGTGTGCTTGTAGTTTTGTCCTTCTGTTTCGGAGGCACGACACC
CACCGCAACGACGGGGGCCAGTGGGTATGCATACATTGCCTACTTGTTCC
CTCGAGACCTGGC
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protein sequence of jgi.p|Nanoce1779_2|187408

>mRNA_8238-protein ID=mRNA_8238-protein|Name=jgi.p|Nanoce1779_2|187408|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MKCISCLRWFLHCPYKTSEHLVYIYILFGGPCHAPWRRHLLKGRQSSNGS
PFPRPRCFCSQTQETLCMSVCFCPRVALDVHCIAPNSLKFKLPTSSVEDG
KYVRALSSPIPPYNHRPLALDLNLFRHIPLSPCLRTLSVGRGLLYSGRPL
FVLLPRLMPDRQATPILQVLKGNDILFPIKARLFVCPTFSRTLSLSKEAL
CLCWTLLWHWPVCL*
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mRNA from alignment at scaffold_23:151376..152538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8238 ID=mRNA_8238|Name=jgi.p|Nanoce1779_2|187408|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at scaffold_23:151376..152538- (Nannochloropsis oceanica)
CTCGGGGTCTCGTCGTTGTTACGGCACCACTTTACTTCTTTTCAGCGACG
ACGTCCTCGTAATTCGCGCTCCGACTTCTCTTATCCTTTGAACTCAAACA
AAAAAAATAACCGCAGGGCAAAATCCCAATATAAATTTTGACTGCCAAAA
AAAAGCCCTTGATGTTAGTTTATCCATGACCGTATCTCACAAATCATTGC
ATCGCAAAGACTTTAGAATAATTGTGAGGTTGGCTTTTTGCCTGCCTAGC
ACAACAAGCGAAGGGGCGTGAGATTCGATCCTTCAAGTGTGCTTCCCTTG
CTGCATGCTGCCCACTCAAGTAGAGGGCATGCCGTCCGTAGGGGCTATCT
CGCCTCTTATCACATACAGGGATCATACGTGGTTTGCTTAATTCACCGAC
CTTGTCTACCAAGTGGCAGTCTGCATGAAATGCATCTCCTGTCTGAGATG
GTTCCTGCACTGCCCGTACAAAACCTCTGAACATCTTGTCTATATATATA
TTCTTTTTGGGGGGCCTTGTCATGCCCCCTGGCGTCGTCATCTATTAAAG
GGTCGCCAATCAAGCAACGGGTCGCCTTTCCCACGTCCGCGTTGTTTTTG
TTCACAAACGCAAGAGACTCTATGTATGTCGGTGTGCTTTTGTCCACGAG
TTGCACTTGACGTCCATTGCATAGCGCCGAACAGTCTCAAGTTCAAACTC
CCAACATCAAGTGTCGAGGATGGCAAGTACGTGCGTGCCTTGTCCTCTCC
AATACCTCCGTACAACCATCGTCCTTTGGCGCTTGACCTTAACCTATTCA
GACATATACCCTTGTCTCCTTGTCTTAGAACCTTGAGCGTGGGCCGCGGC
CTTTTGTATTCCGGTCGCCCTCTTTTTGTTCTGCTTCCTCGGTTGATGCC
CGACCGACAGGCGACACCCATTCTGCAAGTGCTTAAGGGAAACGACATCC
TTTTTCCCATTAAAGCCCGTCTGTTTGTATGCCCTACATTCTCACGCACG
CTCTCCTTGTCGAAAGAGGCCCTGTGCCTGTGCTGGACACTGCTGTGGCA
CTGGCCCGTGTGCTTGTAGTTTTGTCCTTCTGTTTCGGAGGCACGACACC
CACCGCAACGACGGGGGCCAGTGGGTATGCATACATTGCCTACTTGTTCC
CTCGAGACCTGGC
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Coding sequence (CDS) from alignment at scaffold_23:151376..152538-

>mRNA_8238 ID=mRNA_8238|Name=jgi.p|Nanoce1779_2|187408|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_23:151376..152538- (Nannochloropsis oceanica)
ATGAAATGCATCTCCTGTCTGAGATGGTTCCTGCACTGCCCGTACAAAAC
CTCTGAACATCTTGTCTATATATATATTCTTTTTGGGGGGCCTTGTCATG
CCCCCTGGCGTCGTCATCTATTAAAGGGTCGCCAATCAAGCAACGGGTCG
CCTTTCCCACGTCCGCGTTGTTTTTGTTCACAAACGCAAGAGACTCTATG
TATGTCGGTGTGCTTTTGTCCACGAGTTGCACTTGACGTCCATTGCATAG
CGCCGAACAGTCTCAAGTTCAAACTCCCAACATCAAGTGTCGAGGATGGC
AAGTACGTGCGTGCCTTGTCCTCTCCAATACCTCCGTACAACCATCGTCC
TTTGGCGCTTGACCTTAACCTATTCAGACATATACCCTTGTCTCCTTGTC
TTAGAACCTTGAGCGTGGGCCGCGGCCTTTTGTATTCCGGTCGCCCTCTT
TTTGTTCTGCTTCCTCGGTTGATGCCCGACCGACAGGCGACACCCATTCT
GCAAGTGCTTAAGGGAAACGACATCCTTTTTCCCATTAAAGCCCGTCTGT
TTGTATGCCCTACATTCTCACGCACGCTCTCCTTGTCGAAAGAGGCCCTG
TGCCTGTGCTGGACACTGCTGTGGCACTGGCCCGTGTGCTTGTAG
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Synonyms
Publications