jgi.p|Nanoce1779_2|532318, mRNA_8237 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532318
Unique NamemRNA_8237
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_23:149620..150829 -

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Properties
Property NameValue
TranscriptId532404
TrackFilteredModels2
ProteinId532318
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:149620..150829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532318gene_8237Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532318mRNA_8237-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8237CDS_8237Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8237 ID=mRNA_8237|Name=jgi.p|Nanoce1779_2|532318|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
ATGCAGCAACTACAGCAGCAGCACAACCATGGGCATAGTAAGAACAAGGC
CCCTTATCGTCCGTTTCCGATTGTCAGCTTTAACCACATGTCTCGGGAGG
TGTTGGATTACGAGCTGTCGCGTGATTTTTATTGCGGCGTGCTCGGGTTT
ATTGAAATTCCCCGACCGGCGTTTGAGAACGAGGGTGTCTGGCTCTATGG
CTTCGGCTTGTCGTTGCATCTGATCAAATCGCGCTACCCACAGAAGAGGC
TGTTGCTCAAGGGACGCAGGATTGAGCATTTCGAGGAAGCCTTGCCTAAC
GTGGACCACATGGCGTTTATCACCAGCAACCTGAACAAGGTGGAGAAGCA
GCTACGTGAGCATTCGGTCTTCTACAAGCGCTTTGGGAGCGACAAGACCA
ACATCCATCAAATTTTCCTGTTCGACCCGGACGGAAACGTCATCGAGATC
GGCAACTGTGCTCCGCCTGTAGGAGAGACGGTATGCTCCCGCGCCGTGGG
CTTGGGAGGACCGGAGAGCCCCCATTCACGTTTGTAG
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protein sequence of jgi.p|Nanoce1779_2|532318

>mRNA_8237-protein ID=mRNA_8237-protein|Name=jgi.p|Nanoce1779_2|532318|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MQQLQQQHNHGHSKNKAPYRPFPIVSFNHMSREVLDYELSRDFYCGVLGF
IEIPRPAFENEGVWLYGFGLSLHLIKSRYPQKRLLLKGRRIEHFEEALPN
VDHMAFITSNLNKVEKQLREHSVFYKRFGSDKTNIHQIFLFDPDGNVIEI
GNCAPPVGETVCSRAVGLGGPESPHSRL*
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mRNA from alignment at scaffold_23:149620..150829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8237 ID=mRNA_8237|Name=jgi.p|Nanoce1779_2|532318|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp|location=Sequence derived from alignment at scaffold_23:149620..150829- (Nannochloropsis oceanica)
ATGCAGCAACTACAGCAGCAGCACAACCATGGGCATAGTAAGAACAAGGC
CCCTTATCGTCCGTTTCCGATTGTCAGCTTTAACCACATGTCTCGGGAGG
TGTTGGATTACGAGCTGTCGCGTGATTTTTATTGCGGCGTGCTCGGGTTT
ATTGAAATTCCCCGACCGGCGTTTGAGAACGAGGGTGTCTGGCTCTATGG
CTTCGGCTTGTCGTTGCATCTGATCAAATCGCGCTACCCACAGAAGAGGC
TGTTGCTCAAGGGACGCAGGATTGGTACGTAGAGGAGGGAGGGAGTGAGG
GAAGGAGGAAAGGGGGGAAAGTTTTCCCCCCTTTTTGATGTATAGTATTT
CGGTGTGAGTCGTGCGTTAGCGAGTGCCTCCCTGGAGGATAGGGATGGAG
AAATGGCGAGAGTTATAAAGAGAGAAAGAAAGGAAAGGAATTCTCTCTCC
GAAGTCTATTATTAACTCACATTGCCTTCCTTTCCTCCCTCCCGTCCACG
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCGTCCACGCTCCCTGCCGTCCT
CCCTTCGGTCCGTCCTCCTTCCCAGAGCATTTCGAGGAAGCCTTGCCTAA
CGTGGACCACATGGCGTTTATCACCAGCAACCTGAACAAGGTGGAGAAGC
AGCTACGTGAGCATTCGGTCTTCTACAAGCGCTTTGGGAGCGACAAGACC
AACGTACGCCCTCTCTCTCTCCCTCCTTCCATTCCTCACTCCCTCCCTAC
CTACCTACCTCTCTTACTCCCTCCCTCCCTACCTCCCTCCCTCCCTTCCT
CCCTCCCTTCCTCCCTCCCTGCCTGCCTCCCTCCCTTCCTCCCTCCCTTC
CTGCCTCCCTCCTTGCCTGCCTCCTTCCTTCCTTCCCGTCACCTAGGCAC
CGTCCCTCCCTCCCTTTGTCTTTGCCTGTCTGCATTCATTCCTTTCCATC
CCTCACTGTGGAGGGTATGACGCTCTTTTTTTAAGCATCGCTTTTTCACA
GCCTCTCCGTGCCCGACCTCATATCTCACGTCCTTCCCTCCCTCTTTCCC
TCCCTCCCTCTTTCCCTCCTTCCAGATCCATCAAATTTTCCTGTTCGACC
CGGACGGAAACGTCATCGAGATCGGCAACTGTGCTCCGCCTGTAGGAGAG
ACGGTATGCTCCCGCGCCGTGGGCTTGGGAGGACCGGAGAGCCCCCATTC
ACGTTTGTAG
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Coding sequence (CDS) from alignment at scaffold_23:149620..150829-

>mRNA_8237 ID=mRNA_8237|Name=jgi.p|Nanoce1779_2|532318|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_23:149620..150829- (Nannochloropsis oceanica)
ATCCATCAAATTTTCCTGTTCGACCCGGACGGAAACGTCATCGAGATCGG
CAACTGTGCTCCGCCTGTAGGAGAGACGGTATGCTCCCGCGCCGTGGGCT
TGGGAGGACCGGAGAGCCCCCATTCACGTTTGTAGAGCATTTCGAGGAAG
CCTTGCCTAACGTGGACCACATGGCGTTTATCACCAGCAACCTGAACAAG
GTGGAGAAGCAGCTACGTGAGCATTCGGTCTTCTACAAGCGCTTTGGGAG
CGACAAGACCAACATGCAGCAACTACAGCAGCAGCACAACCATGGGCATA
GTAAGAACAAGGCCCCTTATCGTCCGTTTCCGATTGTCAGCTTTAACCAC
ATGTCTCGGGAGGTGTTGGATTACGAGCTGTCGCGTGATTTTTATTGCGG
CGTGCTCGGGTTTATTGAAATTCCCCGACCGGCGTTTGAGAACGAGGGTG
TCTGGCTCTATGGCTTCGGCTTGTCGTTGCATCTGATCAAATCGCGCTAC
CCACAGAAGAGGCTGTTGCTCAAGGGACGCAGGATTGATCCATCAAATTT
TCCTGTTCGACCCGGACGGAAACGTCATCGAGATCGGCAACTGTGCTCCG
CCTGTAGGAGAGACGGTATGCTCCCGCGCCGTGGGCTTGGGAGGACCGGA
GAGCCCCCATTCACGTTTGTAGAGCATTTCGAGGAAGCCTTGCCTAACGT
GGACCACATGGCGTTTATCACCAGCAACCTGAACAAGGTGGAGAAGCAGC
TACGTGAGCATTCGGTCTTCTACAAGCGCTTTGGGAGCGACAAGACCAAC
ATGCAGCAACTACAGCAGCAGCACAACCATGGGCATAGTAAGAACAAGGC
CCCTTATCGTCCGTTTCCGATTGTCAGCTTTAACCACATGTCTCGGGAGG
TGTTGGATTACGAGCTGTCGCGTGATTTTTATTGCGGCGTGCTCGGGTTT
ATTGAAATTCCCCGACCGGCGTTTGAGAACGAGGGTGTCTGGCTCTATGG
CTTCGGCTTGTCGTTGCATCTGATCAAATCGCGCTACCCACAGAAGAGGC
TGTTGCTCAAGGGACGCAGGATTGATCCATCAAATTTTCCTGTTCGACCC
GGACGGAAACGTCATCGAGATCGGCAACTGTGCTCCGCCTGTAGGAGAGA
CGGTATGCTCCCGCGCCGTGGGCTTGGGAGGACCGGAGAGCCCCCATTCA
CGTTTGTAGAGCATTTCGAGGAAGCCTTGCCTAACGTGGACCACATGGCG
TTTATCACCAGCAACCTGAACAAGGTGGAGAAGCAGCTACGTGAGCATTC
GGTCTTCTACAAGCGCTTTGGGAGCGACAAGACCAACATGCAGCAACTAC
AGCAGCAGCACAACCATGGGCATAGTAAGAACAAGGCCCCTTATCGTCCG
TTTCCGATTGTCAGCTTTAACCACATGTCTCGGGAGGTGTTGGATTACGA
GCTGTCGCGTGATTTTTATTGCGGCGTGCTCGGGTTTATTGAAATTCCCC
GACCGGCGTTTGAGAACGAGGGTGTCTGGCTCTATGGCTTCGGCTTGTCG
TTGCATCTGATCAAATCGCGCTACCCACAGAAGAGGCTGTTGCTCAAGGG
ACGCAGGATTG
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Synonyms
Publications