jgi.p|Nanoce1779_2|601241, mRNA_8236 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601241
Unique Name	mRNA_8236
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2849
Alignment location	scaffold_23:145853..149307 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601327
Track	FilteredModels2
ProteinId	601241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:145853..149307 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601241	gene_8236	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601241	mRNA_8236-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8236	CDS_8236	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:145853..149307+
coding sequence from alignment at scaffold_23:145853..149307+

mRNA sequence

>mRNA_8236 ID=mRNA_8236|Name=jgi.p|Nanoce1779_2|601241|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp
CCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCGTTGCCAC
CAGCTGTCTAGTAGTCTTCATCACCACTTCCTTCTCTCCTCCTCTTCGCC
CTCCCTGCTCCTGCTCCTCCTCCTCTCCCTCCATCGCGACCAGTGTTATC
AATGGCTGCAATGTCCCTACCATATACTGATGCACTGCACATTCATAAAA
AGAATGTGAATACTTGACGGGGAAAAGTTCTTCGTGCAGGGTTTTGATGG
CGTGCAGGTCGTTGGGACAGAGCGGGCGAAAGGTGAGGGAGGGGGGGGGG
GGAGTAAGAGGACGTAGAGGAAGAGTGGGAGGAGGAAGGGCGAGGAGTGG
TGTCAATGGTTGTAGTGGTGCTGCTGGCGTGAGCGAGAGGCATGAATGGA
TAGTTAGATTGCACTGCGGAAAAAAGGCTCTAGTGCATGCTACGCATGTG
CTACAGGGCGATGCTGCTGGTGCTGACTGCCACTCGTGCTGCCCGGAGGG
GAATGGGTTTTCGCTACTCCTGCTCTCCTTACTGTCCCCCACTTCTTTTA
AGACGCACTCCTGGCCGCTGCCGCTGCTGCTCCTCCTACTGCTGCTACGG
TGCGTGTGTAGTGCGAAGAGGGTCGCGATAAAGCCGCCGCAACTATGAGG
AAACTTACGGGCTACGGTACTGTGATAAAGTAAAGCAGGAGTATAATGCA
ATAGATGAATGGATCTGCGAGTCAAATCTTAGGACTCAAAGTAGGGCCAG
GTCACTGTCAAGACGCTCTCACACACAGACAAGCAATGTCCCTTTTATCC
CGGGTCAAGGGCCCGATTTTGAAGTACTGCTTCTTCTTGCGGAAGACTGA
TGACGGTGGCCTGGCAAAATCTTTTGTTTCCAATCAATTGACAGCACTGA
CATATGCACCACACAACAAAAAATCTCTCCACAGGTTTCACCTTACGTTC
AAAATCGACTACCATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTT
TGGTCCTTTTGTTTGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACA
CGACCGGCTTCAACCACCACGGCAAGACGCCTGCAGCCACATACTCCCTC
CTCCGCGTCCTCCCTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTT
CCCTACAACAACGATCGCGCGGCCAGCCCCTATACGGCATCTTCGGCCTG
GGCACACCCGAGCTGGTGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGG
GCCAGACAAGATCGTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAG
AGTTGAAGGCAGTGCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAG
GAGGCAGCGGTCAAGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAA
GGAGAGTGCGAAGAAAGAGTAAGCATGGGAAAATCAAGGATGGGGGGAAG
AAATGAGATCATCAGTGGTGGGGTAGCTATGCTGATGATAACGTTTGGCA
TGTGACGAGGAGGAGGCGGAGGAGGAAGGCGACAAGTGTGAGGGCTGGGG
GAAGTGGTCACCCAAGCGGTACTCTACTGCACCTACAAGACAACACAAAA
GAAGCTGGAACAGCAGCAGCAGCAGCGACAGCAGGAGCATCAGCAATAAG
TCAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACCACCAGCAGC
AGCATAAATAACCATCCAGAGACGAAAAAGGGTACCTTTTAGTTCAAAAG
TTCAAGACAGAATTTAAGTTTAAAGTTTGAAAGTAATTGAAAGAAAGGAA
GAAATGAAAAATGACTGACGCCCGGATGCACGTCATCGGTCCCCCGTCAT
GAAAACTTAAAATCAGGCTTGCTTTCAGATGGTGGGGTGGTCGGATTACT
TAGATTACTTACCATTTTGAATCTAGGGCCGGTGGTTATTGATCCAGCCG
TTGATTCAGTTGCCAGACGGCTGGGAGAAGATGACAAGCGGTTCTACAAG
GAGAGATAGGTGAGGGTTAAAATGATACATGTGTCTGTGAGCGACCGATC
CCCAAGAGTTAGAGAAGTTCCACTACCCGGAAGTGACCACTGATAGTGGG
TTTTTTTTTCGGTAACCTGTGATTGATCGATTCGCGAGTTGTATCCGGTG
ACACATGCGCGCATCCGAGGTGGGTGTGGTGGCAGTCTCTTTCCTTATCT
CTTGGCTGTTACTTTGAATCGTGTCCGTAATTTCTTGTCCATCGATAGCT
TATGAACTTTTCTTTTCCCATCCTTTACTTGTTCTTCTTCTTTGAGAGTG
TCTCTGGTTACGTGCTAGAGTTTAATTCCTTGAGCCCTTCTTTTGGACTT
GTTTTTCCTCCTTCCTCCCTTCTTGTCTCACTTTCCCCTTCTCTCACAGA
AGACTCGCAATAAGAAATAACAGAGAGGGGAGGGAAGAGGTTATTTAAAT
CCGTTGTTGTGGTAGCTGCCACTGCTGCTGCTACTGCTACTGTTTGTTCA
ACAACGGCAATAACAACAGCGAATCCTACAACTACTACTTCAACCTGCTT
CTACTTCTTCTACTATTACATAGACGATGGAGTAGCCATATTCTCTCCCT
AGCCTACCGACTGAAATACATACATATATATGATGTGTATATGAAAAAAT
AATAATTTCCCTTTCGGTGACTTCTGATCTCATTCATTCGATTGTCTGAG
AGTCGCTAGAGATATGGATATATTCAAGTAGCACGGGTGAAGGCTCCTTC
CACTCTTCCGTCTATCCCTCCCTCTCTCCTTCCCTCCCTCTCTCGTCTCT
TGACGCTTTTTTCCCTTTCTCTCCCTAACTCTCTCTATATATATCTGTC

protein sequence of jgi.p|Nanoce1779_2|601241

>mRNA_8236-protein ID=mRNA_8236-protein|Name=jgi.p|Nanoce1779_2|601241|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MHHTTKNLSTGFTLRSKSTTMSFARRVSILALLVLLFGACADAFLPSITR
PASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLG
TPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEE
AAVKTKADLARESKEKESAKKE*

mRNA from alignment at scaffold_23:145853..149307+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8236 ID=mRNA_8236|Name=jgi.p|Nanoce1779_2|601241|organism=Nannochloropsis oceanica|type=mRNA|length=3455bp|location=Sequence derived from alignment at scaffold_23:145853..149307+ (Nannochloropsis oceanica)
CCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCGTTGCCAC
CAGCTGTCTAGTAGTCTTCATCACCACTTCCTTCTCTCCTCCTCTTCGCC
CTCCCTGCTCCTGCTCCTCCTCCTCTCCCTCCATCGCGACCAGTGTTATC
AATGGCTGCAATGTCCCTACCATATACTGATGCACTGCACATTCATAAAA
AGAATGTGAATACTTGACGGGGAAAAGTTCTTCGTGCAGGGTTTTGATGG
CGTGCAGGTCGTTGGGACAGAGCGGGCGAAAGGTGAGGGAGGGGGGGGGG
GGAGTAAGAGGACGTAGAGGAAGAGTGGGAGGAGGAAGGGCGAGGAGTGG
TGTCAATGGTTGTAGTGGTGCTGCTGGCGTGAGCGAGAGGCATGAATGGA
TAGTTAGATTGCACTGCGGAAAAAAGGCTCTAGTGCATGCTACGCATGTG
CTACAGGGCGATGCTGCTGGTGCTGACTGCCACTCGTGCTGCCCGGAGGG
GAATGGGTTTTCGCTACTCCTGCTCTCCTTACTGTCCCCCACTTCTTTTA
AGACGCACTCCTGGCCGCTGCCGCTGCTGCTCCTCCTACTGCTGCTACGG
TGCGTGTGTAGTGCGAAGAGGGTCGCGATAAAGCCGCCGCAACTATGAGG
AAACTTACGGGCTACGGTACTGTGATAAAGTAAAGCAGGAGTATAATGCA
ATAGATGAATGGATCTGCGAGTCAAATCTTAGGACTCAAAGTAGGGCCAG
GTCACTGTCAAGACGCTCTCACACACAGACAAGCAATGTCCCTTTTATCC
CGGGTCAAGGGCCCGATTTTGAAGTACTGCTTCTTCTTGCGGAAGACTGA
TGACGGTGGCCTGGCAAAATCTTTTGTTTCCAATCAATTGACAGCACTGA
CATATGCACCACACAACAAAAAATCTCTCCACAGGTTTCACCTTACGTTC
AAAATCGACTACCATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTT
TGGTCCTTTTGTTTGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACA
CGACCGGCTTCAACCACCACGGCAAGACGCCTGCAGCCACATACTCCCTC
CTCCGCGTCCTCCCTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTT
CCCTACAACAACGATCGCGCGGTACGTCTCTGTGTACGCGAGGTTCATGT
CTGTGTGCCTCGTTTAAGGCCAAGGGGCTTGCTTCCTTTATCCGAGTTGA
AGATAACCGTATGATATGTCTGTGAGAGTGAGTGGGTGTGACTGCCAGAC
CCTCCACATGTACCCTCCTTTTCATGAAATGGGAGCTCTCACATGACGTG
AGATGACACGCTTGCGTACTTTGAATGCTTCCGGGTTGAGATTCCTCCTC
CAAGGGACCTCCCCCCTCCTCGAGAACGGAGACGCATCACAAAATAAAAA
TAAGTTAAGCACGATCTCACACCCTCACCCCCTCCTCCTTTCCACCAAAC
TATAGGCCAGCCCCTATACGGCATCTTCGGCCTGGGCACACCCGAGCTGG
TGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGTACGCCCTTTTCCTTCT
CTCCCTCCCTCCCACCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCT
CCCTCCATTCCTTCCTCACGCTTTCCTGAAAAAGAAAACATTTCAAATGT
CACTTATGTCTATTATGCACGGTGTCGATATACTGTGAATGCACCCTGTC
GGCAAAAATGAGGAGAAGCTACTGTTCCTCCCATCACCCGATCCACTCTC
AACCCAATCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTTC
GCAGGGGCCAGACAAGATCGTGGACCTCGCCCGTGGGGTAGGCAAGGCGG
CCGGAGAGTTGAAGGCAGTGCCGCAGGAGTTTGAGAAGGGGTTGAAGACA
GGAGAGGAGGCAGCGGTCAAGACTAAGGCCGATCTTGCAAGGGAGTCGAA
GGAAAAGGAGAGTGCGAAGAAAGAGTAAGCATGGGAAAATCAAGGATGGG
GGGAAGAAATGAGATCATCAGTGGTGGGGTAGCTATGCTGATGATAACGT
TTGGCATGTGACGAGGAGGAGGCGGAGGAGGAAGGCGACAAGTGTGAGGG
CTGGGGGAAGTGGTCACCCAAGCGGTACTCTACTGCACCTACAAGACAAC
ACAAAAGAAGCTGGAACAGCAGCAGCAGCAGCGACAGCAGGAGCATCAGC
AATAAGTCAGCAGCAGCAGCAGCACCACCACCACCACCACCACCACCACC
AGCAGCAGCATAAATAACCATCCAGAGACGAAAAAGGGTACCTTTTAGTT
CAAAAGTTCAAGACAGAATTTAAGTTTAAAGTTTGAAAGTAATTGAAAGA
AAGGAAGAAATGAAAAATGACTGACGCCCGGATGCACGTCATCGGTCCCC
CGTCATGAAAACTTAAAATCAGGCTTGCTTTCAGATGGTGGGGTGGTCGG
ATTACTTAGATTACTTACCATTTTGAATCTAGGGCCGGTGGTTATTGATC
CAGCCGTTGATTCAGTTGCCAGACGGCTGGGAGAAGATGACAAGCGGTTC
TACAAGGAGAGATAGGTGAGGGTTAAAATGATACATGTGTCTGTGAGCGA
CCGATCCCCAAGAGTTAGAGAAGTTCCACTACCCGGAAGTGACCACTGAT
AGTGGGTTTTTTTTTCGGTAACCTGTGATTGATCGATTCGCGAGTTGTAT
CCGGTGACACATGCGCGCATCCGAGGTGGGTGTGGTGGCAGTCTCTTTCC
TTATCTCTTGGCTGTTACTTTGAATCGTGTCCGTAATTTCTTGTCCATCG
ATAGCTTATGAACTTTTCTTTTCCCATCCTTTACTTGTTCTTCTTCTTTG
AGAGTGTCTCTGGTTACGTGCTAGAGTTTAATTCCTTGAGCCCTTCTTTT
GGACTTGTTTTTCCTCCTTCCTCCCTTCTTGTCTCACTTTCCCCTTCTCT
CACAGAAGACTCGCAATAAGAAATAACAGAGAGGGGAGGGAAGAGGTTAT
TTAAATCCGTTGTTGTGGTAGCTGCCACTGCTGCTGCTACTGCTACTGTT
TGTTCAACAACGGCAATAACAACAGCGAATCCTACAACTACTACTTCAAC
CTGCTTCTACTTCTTCTACTATTACATAGACGATGGAGTAGCCATATTCT
CTCCCTAGCCTACCGACTGAAATACATACATATATATGATGTGTATATGA
AAAAATAATAATTTCCCTTTCGGTGACTTCTGATCTCATTCATTCGATTG
TCTGAGAGTCGCTAGAGATATGGATATATTCAAGTAGCACGGGTGAAGGC
TCCTTCCACTCTTCCGTCTATCCCTCCCTCTCTCCTTCCCTCCCTCTCTC
GTCTCTTGACGCTTTTTTCCCTTTCTCTCCCTAACTCTCTCTATATATAT
CTGTC

Coding sequence (CDS) from alignment at scaffold_23:145853..149307+

>mRNA_8236 ID=mRNA_8236|Name=jgi.p|Nanoce1779_2|601241|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_23:145853..149307+ (Nannochloropsis oceanica)
ATGCACCACACAACAAAAAATCTCTCCACAGGTTTCACCTTACGTTCAAA
ATCGACTACCATGTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGG
TCCTTTTGTTTGGCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGA
CCGGCTTCAACCACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTC
CGCGTCCTCCCTCCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCC
TACAACAACGATCGCGCGGCCAGCCCCTATACGGCATCTTCGGCCTGGGC
ACACCCGAGCTGGTGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGGGCC
AGACAAGATCGTGGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGT
TGAAGGCAGTGCCGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAG
GCAGCGGTCAAGACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGA
GAGTGCGAAGAAAGAGTAAATGCACCACACAACAAAAAATCTCTCCACAG
GTTTCACCTTACGTTCAAAATCGACTACCATGTCTTTCGCCCGTCGGGTC
AGCATCCTGGCGCTTTTGGTCCTTTTGTTTGGCGCGTGCGCCGATGCCTT
CCTTCCTTCCATCACACGACCGGCTTCAACCACCACGGCAAGACGCCTGC
AGCCACATACTCCCTCCTCCGCGTCCTCCCTCCTCGTCACCCGCCCGCAA
TCCTCACCCTTGTCTTCCCTACAACAACGATCGCGCGGCCAGCCCCTATA
CGGCATCTTCGGCCTGGGCACACCCGAGCTGGTGGTGATTGCGCTCGTGG
CAGGCATCGTGCTGGGGCCAGACAAGATCGTGGACCTCGCCCGTGGGGTA
GGCAAGGCGGCCGGAGAGTTGAAGGCAGTGCCGCAGGAGTTTGAGAAGGG
GTTGAAGACAGGAGAGGAGGCAGCGGTCAAGACTAAGGCCGATCTTGCAA
GGGAGTCGAAGGAAAAGGAGAGTGCGAAGAAAGAGTAAATGCACCACACA
ACAAAAAATCTCTCCACAGGTTTCACCTTACGTTCAAAATCGACTACCAT
GTCTTTCGCCCGTCGGGTCAGCATCCTGGCGCTTTTGGTCCTTTTGTTTG
GCGCGTGCGCCGATGCCTTCCTTCCTTCCATCACACGACCGGCTTCAACC
ACCACGGCAAGACGCCTGCAGCCACATACTCCCTCCTCCGCGTCCTCCCT
CCTCGTCACCCGCCCGCAATCCTCACCCTTGTCTTCCCTACAACAACGAT
CGCGCGGCCAGCCCCTATACGGCATCTTCGGCCTGGGCACACCCGAGCTG
GTGGTGATTGCGCTCGTGGCAGGCATCGTGCTGGGGCCAGACAAGATCGT
GGACCTCGCCCGTGGGGTAGGCAAGGCGGCCGGAGAGTTGAAGGCAGTGC
CGCAGGAGTTTGAGAAGGGGTTGAAGACAGGAGAGGAGGCAGCGGTCAAG
ACTAAGGCCGATCTTGCAAGGGAGTCGAAGGAAAAGGAGAGTGCGAAGAA
AGAGTAA

Synonyms

Publications