jgi.p|Nanoce1779_2|601223, mRNA_8233 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601223
Unique Name	mRNA_8233
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1903
Alignment location	scaffold_23:132116..134018 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601309
Track	FilteredModels2
ProteinId	601223

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:132116..134018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601223	gene_8233	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601223	mRNA_8233-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8233	CDS_8233	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:132116..134018+
coding sequence from alignment at scaffold_23:132116..134018+

mRNA sequence

>mRNA_8233 ID=mRNA_8233|Name=jgi.p|Nanoce1779_2|601223|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp
CAGATAACCACACATGAAGAATCAAGGATTCGAACCCAATTTGTTCAAGT
TTCTGTGCCACGTTTTCGACCCCTACCCCATGCCGACCCACGTGCCCTGG
CTTTCGGCACTTCAACAGCGTTTTGTGGAGGGCCTGGACTGCGATGTAAT
CGTACGGGTTAAAATCGAGCAGCCCCCTGCCAAGCGCACGCGTACAGACG
ACGGCACTGATGCGGGTGATGGAGCCGTTCAGCCAATGCAAGAGCAGCAG
CGACAACGACTCACCGTCGACATTCCTTGCAATTCCAGCATTCTCAAGGT
GAGATCCGCCTACTTTGACGCGGCGTTCAGCGGCGCCCACGTCAAAAACG
AGCAGAGGAAAGTGAACATTGAGCTACCGGACGTTCAGGCAGTCGAGGAT
TTCAGGCTCCTGGTCAAGCTCGCCTGCGGCGTGTCTTATGTCCATGATGG
GGGTGTACGGTTGTCAATGTCTAAGCGGCTGCGTCTTGCCTTTTTAGGCA
ACACTTTTGAATTCAAAGAGTGTGTAAAAGAGTGTCTGCAGTCGCTGAGC
GAGGATGCCTTGGTGCCGGAGGACGCTTGCACTTTGCTTGACAAGATGCC
GAAAGAGCTGTGGGAGCACGAGGCCGCCATGGCCATAAGAATTAAGATTG
TAAAGGTTTTGGTTGAAGAGGTGGATAAGCAAGCGAAGCGGAGAGAGGAG
GGCGGAACTGTCGCGAAGGAGACGGCGGCAGCGGCCGATCTGATGTGCAA
GGTGACCAAGGCACTAGTGGGGATCATTGACGAACTCGGCCCGCGCGCTG
TGCATGGAGAGGCTAGTACGCGGAGTAAATATGAAATCTTGGAACAGGTT
GGCGGGGCCCTGTGCATGGTTTTGGGTCCAGTGGATCAGATGTTCGACCA
AGGGCCAGCAAGCAAGCAATTCAAGCACACCCTCTATATCTCACTCCCTC
TCTGCGTCGATATCAAAAGATTGTCTGCAAGGGTCATGAGCATTTTGCTT
GGGTCTGACAAACTCCAGCTGCGGTCCGAGAACGACGCTTACTATCTGCT
GTGCGCATGGCTGTCGCAGTCCAGGCGCATCTCTGACCAGAAAGAGTGTC
GAGTTCTCTTCAGTCGATTTCTCCCGCAGCTCCGCTTTGAGCACATGTCT
CAAGATTTCCTTAGTGCCTTCGTGAGTGCTTGTCCCTATGCCAACGCGTC
GGGGCTTTTCTCATATATCTTGCGCTACAGCCACGCCCGTCTTACGTTGC
CTCGAAACTTACATGACTCTCATAAGAAGCTTGTCAAGATGGGTAAAAAA
GACAGGAGTATGGGTGATCTCTCATGCACTCTCAAGAGCAAGCTCGGCCT
ACAGGACCTCCTGCCATTGAAGCTGAAGAAGGCTCCTGAGGTGCCAGAGC
GCATCTCCAAATATATTGGTTTGGCGTTAGGCTTCCCGGTAGCTGTGCAG
GTGAATCGTGAGGCCAAAGGCCTCTTTGGGATCTACGTTTATGTTGGGAT
GCCCCTTTGGCAGGGGCTTAGTGTCGACGAAGGGCGTGAGAGCCGCGTTG
CGTTCGAGTGTTGGGTGGAGACGGGGAAGAAGACCAATTATCTCGGGTAT
CTGTTTAATGGTAAAGGAAGCCGGGGCTGGCCGGATTTTTTTGGTAAATC
GTGGGAAGATGTTGTCTTCCCAGACAGCCCTTATTTTCCCGACGGCGTGA
TGACGATGGAAGTGACGATGAAACCGATCAAGCGAAACTAGGCGTGCCAC
GATTTGGGCTCCAGTTTTCTTTGTATAGCTGACATAAAGTGAAAATGAGA
AAGAGAAATATGTTTGCATGGTAATGTGACGAGTACACATATTTATGTAT
AGCTCAAACAAAGTACGAGAAGCAAAAAAATATTTGTATGTATGGTAGTG
GAA

protein sequence of jgi.p|Nanoce1779_2|601223

>mRNA_8233-protein ID=mRNA_8233-protein|Name=jgi.p|Nanoce1779_2|601223|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MKNQGFEPNLFKFLCHVFDPYPMPTHVPWLSALQQRFVEGLDCDVIVRVK
IEQPPAKRTRTDDGTDAGDGAVQPMQEQQRQRLTVDIPCNSSILKVRSAY
FDAAFSGAHVKNEQRKVNIELPDVQAVEDFRLLVKLACGVSYVHDGGVRL
SMSKRLRLAFLGNTFEFKECVKECLQSLSEDALVPEDACTLLDKMPKELW
EHEAAMAIRIKIVKVLVEEVDKQAKRREEGGTVAKETAAAADLMCKVTKA
LVGIIDELGPRAVHGEASTRSKYEILEQVGGALCMVLGPVDQMFDQGPAS
KQFKHTLYISLPLCVDIKRLSARVMSILLGSDKLQLRSENDAYYLLCAWL
SQSRRISDQKECRVLFSRFLPQLRFEHMSQDFLSAFVSACPYANASGLFS
YILRYSHARLTLPRNLHDSHKKLVKMGKKDRSMGDLSCTLKSKLGLQDLL
PLKLKKAPEVPERISKYIGLALGFPVAVQVNREAKGLFGIYVYVGMPLWQ
GLSVDEGRESRVAFECWVETGKKTNYLGYLFNGKGSRGWPDFFGKSWEDV
VFPDSPYFPDGVMTMEVTMKPIKRN*

mRNA from alignment at scaffold_23:132116..134018+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8233 ID=mRNA_8233|Name=jgi.p|Nanoce1779_2|601223|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at scaffold_23:132116..134018+ (Nannochloropsis oceanica)
CAGATAACCACACATGAAGAATCAAGGATTCGAACCCAATTTGTTCAAGT
TTCTGTGCCACGTTTTCGACCCCTACCCCATGCCGACCCACGTGCCCTGG
CTTTCGGCACTTCAACAGCGTTTTGTGGAGGGCCTGGACTGCGATGTAAT
CGTACGGGTTAAAATCGAGCAGCCCCCTGCCAAGCGCACGCGTACAGACG
ACGGCACTGATGCGGGTGATGGAGCCGTTCAGCCAATGCAAGAGCAGCAG
CGACAACGACTCACCGTCGACATTCCTTGCAATTCCAGCATTCTCAAGGT
GAGATCCGCCTACTTTGACGCGGCGTTCAGCGGCGCCCACGTCAAAAACG
AGCAGAGGAAAGTGAACATTGAGCTACCGGACGTTCAGGCAGTCGAGGAT
TTCAGGCTCCTGGTCAAGCTCGCCTGCGGCGTGTCTTATGTCCATGATGG
GGGTGTACGGTTGTCAATGTCTAAGCGGCTGCGTCTTGCCTTTTTAGGCA
ACACTTTTGAATTCAAAGAGTGTGTAAAAGAGTGTCTGCAGTCGCTGAGC
GAGGATGCCTTGGTGCCGGAGGACGCTTGCACTTTGCTTGACAAGATGCC
GAAAGAGCTGTGGGAGCACGAGGCCGCCATGGCCATAAGAATTAAGATTG
TAAAGGTTTTGGTTGAAGAGGTGGATAAGCAAGCGAAGCGGAGAGAGGAG
GGCGGAACTGTCGCGAAGGAGACGGCGGCAGCGGCCGATCTGATGTGCAA
GGTGACCAAGGCACTAGTGGGGATCATTGACGAACTCGGCCCGCGCGCTG
TGCATGGAGAGGCTAGTACGCGGAGTAAATATGAAATCTTGGAACAGGTT
GGCGGGGCCCTGTGCATGGTTTTGGGTCCAGTGGATCAGATGTTCGACCA
AGGGCCAGCAAGCAAGCAATTCAAGCACACCCTCTATATCTCACTCCCTC
TCTGCGTCGATATCAAAAGATTGTCTGCAAGGGTCATGAGCATTTTGCTT
GGGTCTGACAAACTCCAGCTGCGGTCCGAGAACGACGCTTACTATCTGCT
GTGCGCATGGCTGTCGCAGTCCAGGCGCATCTCTGACCAGAAAGAGTGTC
GAGTTCTCTTCAGTCGATTTCTCCCGCAGCTCCGCTTTGAGCACATGTCT
CAAGATTTCCTTAGTGCCTTCGTGAGTGCTTGTCCCTATGCCAACGCGTC
GGGGCTTTTCTCATATATCTTGCGCTACAGCCACGCCCGTCTTACGTTGC
CTCGAAACTTACATGACTCTCATAAGAAGCTTGTCAAGATGGGTAAAAAA
GACAGGAGTATGGGTGATCTCTCATGCACTCTCAAGAGCAAGCTCGGCCT
ACAGGACCTCCTGCCATTGAAGCTGAAGAAGGCTCCTGAGGTGCCAGAGC
GCATCTCCAAATATATTGGTTTGGCGTTAGGCTTCCCGGTAGCTGTGCAG
GTGAATCGTGAGGCCAAAGGCCTCTTTGGGATCTACGTTTATGTTGGGAT
GCCCCTTTGGCAGGGGCTTAGTGTCGACGAAGGGCGTGAGAGCCGCGTTG
CGTTCGAGTGTTGGGTGGAGACGGGGAAGAAGACCAATTATCTCGGGTAT
CTGTTTAATGGTAAAGGAAGCCGGGGCTGGCCGGATTTTTTTGGTAAATC
GTGGGAAGATGTTGTCTTCCCAGACAGCCCTTATTTTCCCGACGGCGTGA
TGACGATGGAAGTGACGATGAAACCGATCAAGCGAAACTAGGCGTGCCAC
GATTTGGGCTCCAGTTTTCTTTGTATAGCTGACATAAAGTGAAAATGAGA
AAGAGAAATATGTTTGCATGGTAATGTGACGAGTACACATATTTATGTAT
AGCTCAAACAAAGTACGAGAAGCAAAAAAATATTTGTATGTATGGTAGTG
GAA

Coding sequence (CDS) from alignment at scaffold_23:132116..134018+

>mRNA_8233 ID=mRNA_8233|Name=jgi.p|Nanoce1779_2|601223|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_23:132116..134018+ (Nannochloropsis oceanica)
ATGAAGAATCAAGGATTCGAACCCAATTTGTTCAAGTTTCTGTGCCACGT
TTTCGACCCCTACCCCATGCCGACCCACGTGCCCTGGCTTTCGGCACTTC
AACAGCGTTTTGTGGAGGGCCTGGACTGCGATGTAATCGTACGGGTTAAA
ATCGAGCAGCCCCCTGCCAAGCGCACGCGTACAGACGACGGCACTGATGC
GGGTGATGGAGCCGTTCAGCCAATGCAAGAGCAGCAGCGACAACGACTCA
CCGTCGACATTCCTTGCAATTCCAGCATTCTCAAGGTGAGATCCGCCTAC
TTTGACGCGGCGTTCAGCGGCGCCCACGTCAAAAACGAGCAGAGGAAAGT
GAACATTGAGCTACCGGACGTTCAGGCAGTCGAGGATTTCAGGCTCCTGG
TCAAGCTCGCCTGCGGCGTGTCTTATGTCCATGATGGGGGTGTACGGTTG
TCAATGTCTAAGCGGCTGCGTCTTGCCTTTTTAGGCAACACTTTTGAATT
CAAAGAGTGTGTAAAAGAGTGTCTGCAGTCGCTGAGCGAGGATGCCTTGG
TGCCGGAGGACGCTTGCACTTTGCTTGACAAGATGCCGAAAGAGCTGTGG
GAGCACGAGGCCGCCATGGCCATAAGAATTAAGATTGTAAAGGTTTTGGT
TGAAGAGGTGGATAAGCAAGCGAAGCGGAGAGAGGAGGGCGGAACTGTCG
CGAAGGAGACGGCGGCAGCGGCCGATCTGATGTGCAAGGTGACCAAGGCA
CTAGTGGGGATCATTGACGAACTCGGCCCGCGCGCTGTGCATGGAGAGGC
TAGTACGCGGAGTAAATATGAAATCTTGGAACAGGTTGGCGGGGCCCTGT
GCATGGTTTTGGGTCCAGTGGATCAGATGTTCGACCAAGGGCCAGCAAGC
AAGCAATTCAAGCACACCCTCTATATCTCACTCCCTCTCTGCGTCGATAT
CAAAAGATTGTCTGCAAGGGTCATGAGCATTTTGCTTGGGTCTGACAAAC
TCCAGCTGCGGTCCGAGAACGACGCTTACTATCTGCTGTGCGCATGGCTG
TCGCAGTCCAGGCGCATCTCTGACCAGAAAGAGTGTCGAGTTCTCTTCAG
TCGATTTCTCCCGCAGCTCCGCTTTGAGCACATGTCTCAAGATTTCCTTA
GTGCCTTCGTGAGTGCTTGTCCCTATGCCAACGCGTCGGGGCTTTTCTCA
TATATCTTGCGCTACAGCCACGCCCGTCTTACGTTGCCTCGAAACTTACA
TGACTCTCATAAGAAGCTTGTCAAGATGGGTAAAAAAGACAGGAGTATGG
GTGATCTCTCATGCACTCTCAAGAGCAAGCTCGGCCTACAGGACCTCCTG
CCATTGAAGCTGAAGAAGGCTCCTGAGGTGCCAGAGCGCATCTCCAAATA
TATTGGTTTGGCGTTAGGCTTCCCGGTAGCTGTGCAGGTGAATCGTGAGG
CCAAAGGCCTCTTTGGGATCTACGTTTATGTTGGGATGCCCCTTTGGCAG
GGGCTTAGTGTCGACGAAGGGCGTGAGAGCCGCGTTGCGTTCGAGTGTTG
GGTGGAGACGGGGAAGAAGACCAATTATCTCGGGTATCTGTTTAATGGTA
AAGGAAGCCGGGGCTGGCCGGATTTTTTTGGTAAATCGTGGGAAGATGTT
GTCTTCCCAGACAGCCCTTATTTTCCCGACGGCGTGATGACGATGGAAGT
GACGATGAAACCGATCAAGCGAAACTAG

Synonyms

Publications