jgi.p|Nanoce1779_2|559267, mRNA_8231 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|559267
Unique Name	mRNA_8231
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2889
Alignment location	scaffold_23:124227..127254 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	559353
Track	FilteredModels2
ProteinId	559267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:124227..127254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559267	gene_8231	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|559267	mRNA_8231-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8231	CDS_8231	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:124227..127254+
coding sequence from alignment at scaffold_23:124227..127254+

mRNA sequence

>mRNA_8231 ID=mRNA_8231|Name=jgi.p|Nanoce1779_2|559267|organism=Nannochloropsis oceanica|type=mRNA|length=2889bp
GGGGAGGAAAAGAAGGAATACTAGGGAGAGGGGGGCTGGGAGCGAGAAAG
CGCAAGAGCGCGGGGGATGAAGGGGGAAACGGGGGAATGCACAAAAAGGC
TCGTGCGAGCGTACGCGTGCCTAGTAGTTTATGCACTCGCAAGCGTATGG
CGGAGAGAGACGTGAAGGTTGAGGGAAGGGAGAAAGGAGGGTTGGAGGAG
CAACGGCAGAAGCGAGCACGCTCTGTTCTTGTAGAGGAGGGTCAGGGAGG
AGGGATAGGCATGGAGATGGAGGCGGTGACCGCCTCTCTTTTTTCGGCGG
CGGACATTGCGCTCTTCAGGCAGATGATGGGGGTGGAGGGAGAAGTGGTG
GGAGGGGTCGAGTCAGAGATAGAGGCCATCGCAAAGGAGGAGAAAAGGAA
GAAGGAGGCGATGGATGGGGTGTCTGCTAATCCCACTGCTGCTGATGATG
ATAAGAATATATCTCCCATGGCGGTGGCTGAATGGAGGTCGAGGAGGGGT
TTGTCTCGTATCAAATTATGGATTTGAATGGACTCCTATACACAGACCTC
TGAGCGATGCATCTTGAAGAGATTCTCTAGCTTCAGATAATAAATGGGTC
CCCCACTGTTTGTTTTTTGCACTGGAAATTCAAAAGGGCGAGACTGAAGG
GAGGAAGGGAGAGTCCGTGCGGTCCCATTTGTGATATTGGGACGCGTCAA
TCTACGCCAGGGAAAAAGGCCCCTTAGATGTATGATGGAAAGGAGAAAAA
GCGAAGCAAGAATTCACATGTACATTTCCCTCCATCTTTTTGTCATGTGT
GTTTAAAAGGAGACTCTATCGCTACGGGAAATCTATTCTTTCTTATAATC
GCATATATCTATATAGACATACATACATGTTTTTTTTTTAATATGAATTT
CGATTTCTTTGTTGCCTTATGCTGCTGCTGCTGCTACCGTAAAGGGTGCC
GCAATGTCACGCCGCTGCTTAGTGTGAAAAGATCCCTCCGCCATTTTTCC
CTTCTCTGTCGGCATCATATATGGGGGATTTGACAGTAAAAGGACGACAG
CAGCAACAGCAGCAGCAGCAGCAGCCTTGAAATGCCGCCCATTATGGAGG
TGGAAAGGTGGGGGGACACTAACAGCAGAATGTTGATGGAGGGAATGATT
GACATACCAAAATGCCCGTGTAGAAATTTTTACACTGGTTGTTGGCGTGC
GTTTAGGGAGGGGATGGGACGAGCAGCTCATCATTTTTCCGCAAGTACCG
ACACCGCATAGCGTTGCTCGACTTGCTCGCCAGAGAAGCAAGTAGAACAA
ACCGTCCTGGAGCAAGATCATCTTTCACCCACCCCACCGACACAACCCCT
CCATCCACAGCACTATTACCATGGCTGACTCCTCTGTATCCACACCTGTC
GACGGGCCCACTCTTCTCAACCGCTGGAAGGCGGCCGGCGGGTTTTTCGA
GCAATACAGCCATCAGAGCAAAAGTACTCAGACTCCCATGCGATTCACCA
TCTTCTTCCCACCTCAAGCCACCACAAAGCCCGTCCCCATCCTCTATTAC
CTATCAGGACTAACATGCACAGACGAAAATGTCGTGCAAAAGGGCTTCGT
GCAATTTCAAGCGGCGAAACGCGGGCTGGCTATTGTCTGTCCGGACACCT
CCCCGCGAGGCGCAGGGGTAGAGGGAGAAGATGACAGTTGGGATTTCGGG
ACGGGCGCAGGCTTCTATATCGACGCCACAGTGGACAAGTGGAAGAAGCA
CTACAACATGTTCTCCTATGTTACCGTCGAGCTGCCTGCCCTCCTCCGAA
CGCATTTCTCCTCCTGCCTTCTTCCGAACAGCCAATCAATCTGCGGGCAC
TCTATGGGGGGCCACGGCGCCTTGATCTGTGCCATAAAGTCCTTCCTCGC
TTCCTCCTCCCCCTCGGGAATAAAGTATGCCTCCGTCTCATGCTTCGCTC
CTATCGCACACCCTACTTCCTGTCAATGGGGCCAAAAAGCCTTCAGTGGG
TATCTTGACAGTGAGGACGGGAAGGAGGAAAAATGGGCTGCATGGGACGC
CACCCTCTTAATGGAAACGCATGGACCGTTTCCCTTTCCTATTTTAATCG
ACCAAGGAACCGCGGATAAATTTTTAGAGGAGCAGTTGAAACCCGGGGCG
CTGGAGGCCGCATGTGAGAAGAAGGGACAAAATGCAAAGATTCGAATGCG
GGAAGGGTACGACCATTCCTATTTTTTTATCAGTACGTTCCTATCGGAGC
ACATTGATTTCCACGCAGATGCCTTGGGGCTCTGAAGGGCCCAATTCGAT
AGCGACTTTCCCTCCCTCCCTGAATTTTGGGTCGGTAGATGCTGTGGAGA
GTGCACTGGCTGCAACAAAGGAGAAGGGGGTTGGAGGGGGAATGTTCGTA
CGGTTGACCAAGAAGTGTCATGCCTACGCATGTGTACAATTCTGTGTTGA
TTTCTCCTGCATCTATGGTGGTGCAAACTAATCGTCTGTTTCAAACAGGT
GTCGTACAATAGGGCAAGAAAACAGATTCTAGAATATTCAAAGAAGGTAT
CGGCTAAGGTGAAGCCGCACGATGGAGAAGGAGAGTGAATGGGAGAAAGT
GATAAGTAGAAGAGAGGAGGAATTGAAGAAAAATGGATAGAAAGAAAGAA
TCTGCTCCATGCTTGTCCAGCAACCGCAAGGTGGGGAAGGGAATACTTGC
CAACTAGAAGACTGCGGCGTAGGAGGGAGACCTTCCCGTCGATCCGTCCA
AGAATGGCTTCCGCCCACCGGCACAAACCTGCCTCATTCGTTCTCGAATA
AATCACCTGTAGCGCTATTGCTCTCATCTCTTCCAGCGGACCCTGTGCGG
GCGCATGCTGTGGCCAAATTTGATCCTGATTAACTTGCT

protein sequence of jgi.p|Nanoce1779_2|559267

>mRNA_8231-protein ID=mRNA_8231-protein|Name=jgi.p|Nanoce1779_2|559267|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MADSSVSTPVDGPTLLNRWKAAGGFFEQYSHQSKSTQTPMRFTIFFPPQA
TTKPVPILYYLSGLTCTDENVVQKGFVQFQAAKRGLAIVCPDTSPRGAGV
EGEDDSWDFGTGAGFYIDATVDKWKKHYNMFSYVTVELPALLRTHFSSCL
LPNSQSICGHSMGGHGALICAIKSFLASSSPSGIKYASVSCFAPIAHPTS
CQWGQKAFSGYLDSEDGKEEKWAAWDATLLMETHGPFPFPILIDQGTADK
FLEEQLKPGALEAACEKKGQNAKIRMREGYDHSYFFISTFLSEHIDFHAD
ALGL*

mRNA from alignment at scaffold_23:124227..127254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8231 ID=mRNA_8231|Name=jgi.p|Nanoce1779_2|559267|organism=Nannochloropsis oceanica|type=mRNA|length=3028bp|location=Sequence derived from alignment at scaffold_23:124227..127254+ (Nannochloropsis oceanica)
GGGGAGGAAAAGAAGGAATACTAGGGAGAGGGGGGCTGGGAGCGAGAAAG
CGCAAGAGCGCGGGGGATGAAGGGGGAAACGGGGGAATGCACAAAAAGGC
TCGTGCGAGCGTACGCGTGCCTAGTAGTTTATGCACTCGCAAGCGTATGG
CGGAGAGAGACGTGAAGGTTGAGGGAAGGGAGAAAGGAGGGTTGGAGGAG
CAACGGCAGAAGCGAGCACGCTCTGTTCTTGTAGAGGAGGGTCAGGGAGG
AGGGATAGGCATGGAGATGGAGGCGGTGACCGCCTCTCTTTTTTCGGCGG
CGGACATTGCGCTCTTCAGGCAGATGATGGGGGTGGAGGGAGAAGTGGTG
GGAGGGGTCGAGTCAGAGATAGAGGCCATCGCAAAGGAGGAGAAAAGGAA
GAAGGAGGCGATGGATGGGGTGTCTGCTAATCCCACTGCTGCTGATGATG
ATAAGAATATATCTCCCATGGCGGTGGCTGAATGGAGGTCGAGGAGGGGT
TTGTCTCGTATCAAATTATGGATTTGAATGGACTCCTATACACAGACCTC
TGAGCGATGCATCTTGAAGAGATTCTCTAGCTTCAGATAATAAATGGGTC
CCCCACTGTTTGTTTTTTGCACTGGAAATTCAAAAGGGCGAGACTGAAGG
GAGGAAGGGAGAGTCCGTGCGGTCCCATTTGTGATATTGGGACGCGTCAA
TCTACGCCAGGGAAAAAGGCCCCTTAGATGTATGATGGAAAGGAGAAAAA
GCGAAGCAAGAATTCACATGTACATTTCCCTCCATCTTTTTGTCATGTGT
GTTTAAAAGGAGACTCTATCGCTACGGGAAATCTATTCTTTCTTATAATC
GCATATATCTATATAGACATACATACATGTTTTTTTTTTAATATGAATTT
CGATTTCTTTGTTGCCTTATGCTGCTGCTGCTGCTACCGTAAAGGGTGCC
GCAATGTCACGCCGCTGCTTAGTGTGAAAAGATCCCTCCGCCATTTTTCC
CTTCTCTGTCGGCATCATATATGGGGGATTTGACAGTAAAAGGACGACAG
CAGCAACAGCAGCAGCAGCAGCAGCCTTGAAATGCCGCCCATTATGGAGG
TGGAAAGGTGGGGGGACACTAACAGCAGAATGTTGATGGAGGGAATGATT
GACATACCAAAATGCCCGTGTAGAAATTTTTACACTGGTTGTTGGCGTGC
GTTTAGGGAGGGGATGGGACGAGCAGCTCATCATTTTTCCGCAAGTACCG
ACACCGCATAGCGTTGCTCGACTTGCTCGCCAGAGAAGCAAGTAGAACAA
ACCGTCCTGGAGCAAGATCATCTTTCACCCACCCCACCGACACAACCCCT
CCATCCACAGCACTATTACCATGGCTGACTCCTCTGTATCCACACCTGTC
GACGGGCCCACTCTTCTCAACCGCTGGAAGGCGGCCGGCGGGTTTTTCGA
GCAATACAGCCATCAGAGCAAAAGTACTCAGACTCCCATGCGATTCACCA
TCTTCTTCCCACCTCAAGCCACCACAAAGCCCGTCCCCATCCTCTATTAC
CTATCAGGACTAACATGCACAGACGAAAATGTCGTGCAAAAGGGCTTCGT
GCAATTTCAAGCGGCGAAACGCGGGCTGGCTATTGTCTGTCCGGACACCT
CCCCGCGAGGCGCAGGGGTAGAGGGAGAAGATGACAGTTGGGATTTCGGG
ACGGGCGCAGGCTTCTATATCGACGCCACAGTGGACAAGTGGAAGAAGTG
AGTGCATGGCAGGCTTGAAGATTATGGTTGACGGTGCCACTCAGGGTCAG
GTTTGGTGTTCCTCTCCTCCATTCTGTAGCCACAACCCACTCACTTTTCC
TCTCTCCCTTCCTCCTTTCCTCGCTTCCTCCCATAGGCACTACAACATGT
TCTCCTATGTTACCGTCGAGCTGCCTGCCCTCCTCCGAACGCATTTCTCC
TCCTGCCTTCTTCCGAACAGCCAATCAATCTGCGGGCACTCTATGGGGGG
CCACGGCGCCTTGATCTGTGCCATAAAGTCCTTCCTCGCTTCCTCCTCCC
CCTCGGGAATAAAGTATGCCTCCGTCTCATGCTTCGCTCCTATCGCACAC
CCTACTTCCTGTCAATGGGGCCAAAAAGCCTTCAGTGGGTATCTTGACAG
TGAGGACGGGAAGGAGGAAAAATGGGCTGCATGGGACGCCACCCTCTTAA
TGGAAACGCATGGACCGTTTCCCTTTCCTATTTTAATCGACCAAGGAACC
GCGGATAAATTTTTAGAGGAGCAGTTGAAACCCGGGGCGCTGGAGGCCGC
ATGTGAGAAGAAGGGACAAAATGCAAAGATTCGAATGCGGGAAGGGTACG
ACCATTCCTATTTTTTTATCAGTACGTTCCTATCGGAGCACATTGATTTC
CACGCAGATGCCTTGGGGCTCTGAAGGGCCCAATTCGATAGCGACTTTCC
CTCCCTCCCTGAATTTTGGGTCGGTAGATGCTGTGGAGAGTGCACTGGCT
GCAACAAAGGAGAAGGGGGTTGGAGGGGGAATGTTCGTACGGTTGACCAA
GAAGTGTCATGCCTACGCATGTGTACAATTCTGTGTTGATTTCTCCTGCA
TCTATGGTGGTGCAAACTAATCGTCTGTTTCAAACAGGTGTCGTACAATA
GGGCAAGAAAACAGATTCTAGAATATTCAAAGAAGGTATCGGCTAAGGTG
AAGCCGCACGATGGAGAAGGAGAGTGAATGGGAGAAAGTGATAAGTAGAA
GAGAGGAGGAATTGAAGAAAAATGGATAGAAAGAAAGAATCTGCTCCATG
CTTGTCCAGCAACCGCAAGGTGGGGAAGGGAATACTTGCCAACTAGAAGA
CTGCGGCGTAGGAGGGAGACCTTCCCGTCGATCCGTCCAAGAATGGCTTC
CGCCCACCGGCACAAACCTGCCTCATTCGTTCTCGAATAAATCACCTGTA
GCGCTATTGCTCTCATCTCTTCCAGCGGACCCTGTGCGGGCGCATGCTGT
GGCCAAATTTGATCCTGATTAACTTGCT

Coding sequence (CDS) from alignment at scaffold_23:124227..127254+

>mRNA_8231 ID=mRNA_8231|Name=jgi.p|Nanoce1779_2|559267|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_23:124227..127254+ (Nannochloropsis oceanica)
ATGGCTGACTCCTCTGTATCCACACCTGTCGACGGGCCCACTCTTCTCAA
CCGCTGGAAGGCGGCCGGCGGGTTTTTCGAGCAATACAGCCATCAGAGCA
AAAGTACTCAGACTCCCATGCGATTCACCATCTTCTTCCCACCTCAAGCC
ACCACAAAGCCCGTCCCCATCCTCTATTACCTATCAGGACTAACATGCAC
AGACGAAAATGTCGTGCAAAAGGGCTTCGTGCAATTTCAAGCGGCGAAAC
GCGGGCTGGCTATTGTCTGTCCGGACACCTCCCCGCGAGGCGCAGGGGTA
GAGGGAGAAGATGACAGTTGGGATTTCGGGACGGGCGCAGGCTTCTATAT
CGACGCCACAGTGGACAAGTGGAAGAAGCACTACAACATGTTCTCCTATG
TTACCGTCGAGCTGCCTGCCCTCCTCCGAACGCATTTCTCCTCCTGCCTT
CTTCCGAACAGCCAATCAATCTGCGGGCACTCTATGGGGGGCCACGGCGC
CTTGATCTGTGCCATAAAGTCCTTCCTCGCTTCCTCCTCCCCCTCGGGAA
TAAAGTATGCCTCCGTCTCATGCTTCGCTCCTATCGCACACCCTACTTCC
TGTCAATGGGGCCAAAAAGCCTTCAGTGGGTATCTTGACAGTGAGGACGG
GAAGGAGGAAAAATGGGCTGCATGGGACGCCACCCTCTTAATGGAAACGC
ATGGACCGTTTCCCTTTCCTATTTTAATCGACCAAGGAACCGCGGATAAA
TTTTTAGAGGAGCAGTTGAAACCCGGGGCGCTGGAGGCCGCATGTGAGAA
GAAGGGACAAAATGCAAAGATTCGAATGCGGGAAGGGTACGACCATTCCT
ATTTTTTTATCAGTACGTTCCTATCGGAGCACATTGATTTCCACGCAGAT
GCCTTGGGGCTCTGAATGGCTGACTCCTCTGTATCCACACCTGTCGACGG
GCCCACTCTTCTCAACCGCTGGAAGGCGGCCGGCGGGTTTTTCGAGCAAT
ACAGCCATCAGAGCAAAAGTACTCAGACTCCCATGCGATTCACCATCTTC
TTCCCACCTCAAGCCACCACAAAGCCCGTCCCCATCCTCTATTACCTATC
AGGACTAACATGCACAGACGAAAATGTCGTGCAAAAGGGCTTCGTGCAAT
TTCAAGCGGCGAAACGCGGGCTGGCTATTGTCTGTCCGGACACCTCCCCG
CGAGGCGCAGGGGTAGAGGGAGAAGATGACAGTTGGGATTTCGGGACGGG
CGCAGGCTTCTATATCGACGCCACAGTGGACAAGTGGAAGAAGCACTACA
ACATGTTCTCCTATGTTACCGTCGAGCTGCCTGCCCTCCTCCGAACGCAT
TTCTCCTCCTGCCTTCTTCCGAACAGCCAATCAATCTGCGGGCACTCTAT
GGGGGGCCACGGCGCCTTGATCTGTGCCATAAAGTCCTTCCTCGCTTCCT
CCTCCCCCTCGGGAATAAAGTATGCCTCCGTCTCATGCTTCGCTCCTATC
GCACACCCTACTTCCTGTCAATGGGGCCAAAAAGCCTTCAGTGGGTATCT
TGACAGTGAGGACGGGAAGGAGGAAAAATGGGCTGCATGGGACGCCACCC
TCTTAATGGAAACGCATGGACCGTTTCCCTTTCCTATTTTAATCGACCAA
GGAACCGCGGATAAATTTTTAGAGGAGCAGTTGAAACCCGGGGCGCTGGA
GGCCGCATGTGAGAAGAAGGGACAAAATGCAAAGATTCGAATGCGGGAAG
GGTACGACCATTCCTATTTTTTTATCAGTACGTTCCTATCGGAGCACATT
GATTTCCACGCAGATGCCTTGGGGCTCTGA

Synonyms

Publications