jgi.p|Nanoce1779_2|627241, mRNA_823 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627241
Unique Name	mRNA_823
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2464
Alignment location	scaffold_2:514207..516670 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627327
Track	FilteredModels2
ProteinId	627241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:514207..516670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627241	gene_823	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627241	mRNA_823-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_823	CDS_823	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:514207..516670+
coding sequence from alignment at scaffold_2:514207..516670+

mRNA sequence

>mRNA_823 ID=mRNA_823|Name=jgi.p|Nanoce1779_2|627241|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp
ACAGACAAGCCCAACGCAAGCCAAGACAGTCCACCATGTCAGCCACGGAG
ATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCACGAGCTGGGCTCTTT
GCCACTACCGCCGCAAGAAAAATACGAGCGTTCGGTCCGGGTCGTGGGGC
GGTGCATCAAAATTAACACGCAGCAGCGACGCATCGTCCTCCAAGACCGG
GCTTCCACGCTGACCGTGGACATTGAATTAATTTCTGACCAATATTTTGT
CATGGACGGGCTGTACCAGGTCATAGGGGAGCTTCGGGAAGGGAGTGAGA
GGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGGCTTCTGCTGCGGGCG
CGTGTGGCTCGGGCGGTGGATGGCATGGATATCTCATTGTATGAGCAGTC
GGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATAAGATGGTGGGAAAGC
AAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGGTGAGATAGGGGGAGG
GGGAGTGAAAGGCAAGTGAATGAACGGATGCCACGATGACATGTGGGCAG
CACCGATGAACGCACAAAAGAAAAATGTAAAGATTTTGTGAATAATTTGG
AATGTCATTGAATACAAGTTCTATCCCTACTTTGTCATTTTTTACAAGTT
CTATCCCTACTTTGTCATTTTTCCTGTTCAGCGAAGCGATACCTGGGCAC
GCGTGTGTTTGTTTCATCACGAAGCAGTCCCAGAGATTTTTTTTAAGTCA
CAAGCATTTACATCATTAGCTTACACTCCTTCTAGCGACAAAAGACCGCT
ACCACCACCATCAACTCCTCCCCCTACCAGAGCATCGGAAAACACTCTAA
CCCCTGTCCTACCTCCCACACAGCTATCCCGGCCATACCCATTTCACTTA
CCAACGCAAACCTCCTCCAGAAGAACGCCGGCGTCGGGAAAGTCCCTACC
ATCTCGTCTTGCCTCCTTCCATCCCTCCCTCCCTCCCCTCGTAAAGAAAA
AATAAGCTCCTGACTCTCCTCCCCCCACTCAAAACGCCGTACCTTCTCAG
GTCTCTCTAAGACTTTTCTCTCAAACTCGTGTCCCACAATCGCCTGACCA
CCCACATACCCATACCAGGGTAGCCCCAACAACATCTTTATCTTAACCAA
ATCCGCCCCCTTATCTGCCCCCCCCTCCTTCCTCCCTTGAACGAAGCTCT
CAATGGTCTCTTCCATCCATCCCAGGGGGCTGTTTGGCGCGCCGGAGGGA
TCGCGGCCATAGTCGTACGTCATGAGGGAAAAACGGTCCACGTGCGGTGA
AAGGGAGAGAAGCATTGAGGGGGTCACCTGTTATTTTTAAAAAGGAAGAA
ATTAAGTCTTTGTCGTGAATTCAGGAAGGGAGGGAGGGGGGAAGGAAGGT
GGCTACGAGGACGACGTACGTGCATCTCCCGCGGGGTCGCCGGACGGGTA
GGCATTTGAAATGCAGGAATGGCCACGATAAGAATGGGAGGCAAGGAGGG
AGGAATAGCCTGAGAGAGGGAAGCCTTGAGGCTGCTGGTGAGATGCGCGA
AAACCCCGCGGGCGTCGATTGGGAATTCGAGTGTATACCTGAACAGAGTG
GTGGAGGAGGGAGGAAGGGATTGAGGGATGGAAGGAGGAAAAATGGGAAG
ACAGTGCAGAGAAAGACCGGCAGTGACAAGAAATCGTGGAAATATAGATT
GATTTCTCTATGGCTGGAAATCTGAAAATAAGGCCCTTCTTCGAAATTGT
TTCTCCCTGGTACGCACCCATCGTAATTCCTCTCCTTCGCCTCGTCCACC
AACAGCCCCACGACCTCGGCAACCTGTTCTGGGTTTACAAACGCCGGTAC
CTCCCAAATCACCCGCGGGACAATACGCACGCGGCCTGATTTGTGTCGTA
CATTGTCGAGCCACGTGCCGTTGAACTCGTGTTTGCCCGTCAGCTCCAAC
TGCTGTCGCTGATGCTGCTGCTGCTCTTGCTGCTGATGTTGTTTTCTTAG
CTGATACCAGACGGGGGCAAGATAAGTCAGTTTGTGAGCATATGTCTCCG
CTACTACAAAACCTTGTCGATTCCAGGGTGTGACATAGGCTAGCACCTCT
TGTGCCCGCTGATTTGATTGCTCACTCCAGGACATGGAGGCAGCGAAGTG
AGTGTCTTCAGGTGCCGTGCGGATCGAGGCACACTGTCGTAGGTGGTCTA
GCGTTAGGTTCTGCGTCTCGTACATGGCCTTTTCATGAGTCTGCTTACCC
TGCCAGAAATAGAAGAAGAAAAAAGCGGCAAAAGCGTAAACAGAGAGAAG
GGCCAGGACATGAAAGCTGAAGAGGGAGGAGGTGGCTGCTGCGTGCGATG
GCGGTGAAGACGATGGTGGTGGCTTTTTGTGCTGCCCTTTTTTGACGCTG
GGGCGCTGCATGGCCGGGCTGTCGCTGATGCTATCACGGGATGGCGATGC
CTGTATCCTGCTGT

protein sequence of jgi.p|Nanoce1779_2|627241

>mRNA_823-protein ID=mRNA_823-protein|Name=jgi.p|Nanoce1779_2|627241|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSATEMSIQHGEIFFLHELGSLPLPPQEKYERSVRVVGRCIKINTQQRRI
VLQDRASTLTVDIELISDQYFVMDGLYQVIGELREGSEREGEEVGGNGRR
LLLRARVARAVDGMDISLYEQSVRLRRAFLEKHKMVGKQERVRNGAGEEW
*

mRNA from alignment at scaffold_2:514207..516670+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_823 ID=mRNA_823|Name=jgi.p|Nanoce1779_2|627241|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp|location=Sequence derived from alignment at scaffold_2:514207..516670+ (Nannochloropsis oceanica)
ACAGACAAGCCCAACGCAAGCCAAGACAGTCCACCATGTCAGCCACGGAG
ATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCACGAGCTGGGCTCTTT
GCCACTACCGCCGCAAGAAAAATACGAGCGTTCGGTCCGGGTCGTGGGGC
GGTGCATCAAAATTAACACGCAGCAGCGACGCATCGTCCTCCAAGACCGG
GCTTCCACGCTGACCGTGGACATTGAATTAATTTCTGACCAATATTTTGT
CATGGACGGGCTGTACCAGGTCATAGGGGAGCTTCGGGAAGGGAGTGAGA
GGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGGCTTCTGCTGCGGGCG
CGTGTGGCTCGGGCGGTGGATGGCATGGATATCTCATTGTATGAGCAGTC
GGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATAAGATGGTGGGAAAGC
AAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGGTGAGATAGGGGGAGG
GGGAGTGAAAGGCAAGTGAATGAACGGATGCCACGATGACATGTGGGCAG
CACCGATGAACGCACAAAAGAAAAATGTAAAGATTTTGTGAATAATTTGG
AATGTCATTGAATACAAGTTCTATCCCTACTTTGTCATTTTTTACAAGTT
CTATCCCTACTTTGTCATTTTTCCTGTTCAGCGAAGCGATACCTGGGCAC
GCGTGTGTTTGTTTCATCACGAAGCAGTCCCAGAGATTTTTTTTAAGTCA
CAAGCATTTACATCATTAGCTTACACTCCTTCTAGCGACAAAAGACCGCT
ACCACCACCATCAACTCCTCCCCCTACCAGAGCATCGGAAAACACTCTAA
CCCCTGTCCTACCTCCCACACAGCTATCCCGGCCATACCCATTTCACTTA
CCAACGCAAACCTCCTCCAGAAGAACGCCGGCGTCGGGAAAGTCCCTACC
ATCTCGTCTTGCCTCCTTCCATCCCTCCCTCCCTCCCCTCGTAAAGAAAA
AATAAGCTCCTGACTCTCCTCCCCCCACTCAAAACGCCGTACCTTCTCAG
GTCTCTCTAAGACTTTTCTCTCAAACTCGTGTCCCACAATCGCCTGACCA
CCCACATACCCATACCAGGGTAGCCCCAACAACATCTTTATCTTAACCAA
ATCCGCCCCCTTATCTGCCCCCCCCTCCTTCCTCCCTTGAACGAAGCTCT
CAATGGTCTCTTCCATCCATCCCAGGGGGCTGTTTGGCGCGCCGGAGGGA
TCGCGGCCATAGTCGTACGTCATGAGGGAAAAACGGTCCACGTGCGGTGA
AAGGGAGAGAAGCATTGAGGGGGTCACCTGTTATTTTTAAAAAGGAAGAA
ATTAAGTCTTTGTCGTGAATTCAGGAAGGGAGGGAGGGGGGAAGGAAGGT
GGCTACGAGGACGACGTACGTGCATCTCCCGCGGGGTCGCCGGACGGGTA
GGCATTTGAAATGCAGGAATGGCCACGATAAGAATGGGAGGCAAGGAGGG
AGGAATAGCCTGAGAGAGGGAAGCCTTGAGGCTGCTGGTGAGATGCGCGA
AAACCCCGCGGGCGTCGATTGGGAATTCGAGTGTATACCTGAACAGAGTG
GTGGAGGAGGGAGGAAGGGATTGAGGGATGGAAGGAGGAAAAATGGGAAG
ACAGTGCAGAGAAAGACCGGCAGTGACAAGAAATCGTGGAAATATAGATT
GATTTCTCTATGGCTGGAAATCTGAAAATAAGGCCCTTCTTCGAAATTGT
TTCTCCCTGGTACGCACCCATCGTAATTCCTCTCCTTCGCCTCGTCCACC
AACAGCCCCACGACCTCGGCAACCTGTTCTGGGTTTACAAACGCCGGTAC
CTCCCAAATCACCCGCGGGACAATACGCACGCGGCCTGATTTGTGTCGTA
CATTGTCGAGCCACGTGCCGTTGAACTCGTGTTTGCCCGTCAGCTCCAAC
TGCTGTCGCTGATGCTGCTGCTGCTCTTGCTGCTGATGTTGTTTTCTTAG
CTGATACCAGACGGGGGCAAGATAAGTCAGTTTGTGAGCATATGTCTCCG
CTACTACAAAACCTTGTCGATTCCAGGGTGTGACATAGGCTAGCACCTCT
TGTGCCCGCTGATTTGATTGCTCACTCCAGGACATGGAGGCAGCGAAGTG
AGTGTCTTCAGGTGCCGTGCGGATCGAGGCACACTGTCGTAGGTGGTCTA
GCGTTAGGTTCTGCGTCTCGTACATGGCCTTTTCATGAGTCTGCTTACCC
TGCCAGAAATAGAAGAAGAAAAAAGCGGCAAAAGCGTAAACAGAGAGAAG
GGCCAGGACATGAAAGCTGAAGAGGGAGGAGGTGGCTGCTGCGTGCGATG
GCGGTGAAGACGATGGTGGTGGCTTTTTGTGCTGCCCTTTTTTGACGCTG
GGGCGCTGCATGGCCGGGCTGTCGCTGATGCTATCACGGGATGGCGATGC
CTGTATCCTGCTGT

Coding sequence (CDS) from alignment at scaffold_2:514207..516670+

>mRNA_823 ID=mRNA_823|Name=jgi.p|Nanoce1779_2|627241|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_2:514207..516670+ (Nannochloropsis oceanica)
ATGTCAGCCACGGAGATGTCCATCCAGCACGGGGAGATTTTCTTCCTGCA
CGAGCTGGGCTCTTTGCCACTACCGCCGCAAGAAAAATACGAGCGTTCGG
TCCGGGTCGTGGGGCGGTGCATCAAAATTAACACGCAGCAGCGACGCATC
GTCCTCCAAGACCGGGCTTCCACGCTGACCGTGGACATTGAATTAATTTC
TGACCAATATTTTGTCATGGACGGGCTGTACCAGGTCATAGGGGAGCTTC
GGGAAGGGAGTGAGAGGGAGGGTGAGGAGGTCGGAGGGAATGGTCGGCGG
CTTCTGCTGCGGGCGCGTGTGGCTCGGGCGGTGGATGGCATGGATATCTC
ATTGTATGAGCAGTCGGTGCGTCTACGGCGGGCATTTTTGGAGAAGCATA
AGATGGTGGGAAAGCAAGAGAGGGTAAGAAATGGCGCAGGAGAAGAGTGG
TGA

Synonyms

Publications