jgi.p|Nanoce1779_2|187031, mRNA_8227 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|187031
Unique Name	mRNA_8227
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1498
Alignment location	scaffold_23:110067..111697 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	187117
Track	FilteredModels2
ProteinId	187031

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:110067..111697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|187031	gene_8227	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|187031	mRNA_8227-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8227	CDS_8227	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:110067..111697+
coding sequence from alignment at scaffold_23:110067..111697+

mRNA sequence

>mRNA_8227 ID=mRNA_8227|Name=jgi.p|Nanoce1779_2|187031|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
ACATCGAGCTTGTGACATTACTACGTTTGCAACGACGTACATGCGTGTGA
TTGACTGTCATACAGTGTCGCAGCCTTCGCTTTCATCCTCCTCAATCCTG
GCACCCGACACACCACCCGTTCACCCACACAGCAAGGGCCCTGTAGCCCT
CCCCCAGTGACAACGACAACAGTCATCGCCGCCACCGTCATTACTTGATC
ATGCATACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCG
TACTGCACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCC
TCTTTCAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTA
CAAGCTCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGG
GGAGCAAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCA
GCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGC
ATTGTCCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAG
GATAGAGAAGTCAGAAATGGCAGCAGCAGACTTTGGCAAGGCCAGCAGCA
ATAGCAGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCG
GTTCAAGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTC
TGCCTTCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGG
ATACCAACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCC
GCCTGGGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCG
TCCTCGCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCT
TCCCTTCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCG
GCAGCTGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGC
TGGGGGTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCC
CAAACGGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTC
CTGGCGACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGA
CACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTGGATC
GAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACACCGAG
ATGAGGTTTCGAAGGGATGCTTTGATGGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGAGGGAGAGAGGGGCACATGGATATCCTTTTGACGGGAC
TGAGGAGATGGAGGGAGGGAGCGAGGGAGGGAGCGAGGTATGAGAAGAAG
AAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAA
GAAGAAGTAGAAGAAGGGAAAGAATAGGATGGCGAAGAAGCCATTTAC

protein sequence of jgi.p|Nanoce1779_2|187031

>mRNA_8227-protein ID=mRNA_8227-protein|Name=jgi.p|Nanoce1779_2|187031|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MHTRSSPSLSVLHSLARTARLDTASLRRLSKPLLFQRLKESTNFDRLRRV
QARSIKRQQQKQREEEGEQETRTARSHASSIISSSTSSSTSSSSRRKRNS
IVRSQHHTNGKEEEEGRIEKSEMAAADFGKASSNSSNSSNSSSDRSKGDA
VQADLSPSSSSPSSSSSAFFSSSSFSYPSKPNMDTNDNSGGGKMSSAEEA
AWEALSASLASSLPPSRPRSVDPILLTELNSSSFPSSLPFFPSSTSSSSA
AAASTTATTAVAAGAVAGGNGGKDDGLIFRFLRPNGSTVSYRVASLIDYL
LATGKFEEPETRLPFTDTDLETLDRLGREGGLDRRSVWRAKHYDGEKYTE
MRFRRDALMGREGGREGGRKGGREGHMDILLTGLRRWREGAREGARYEKK
KKKKKNKKKKKKKK*

mRNA from alignment at scaffold_23:110067..111697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8227 ID=mRNA_8227|Name=jgi.p|Nanoce1779_2|187031|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp|location=Sequence derived from alignment at scaffold_23:110067..111697+ (Nannochloropsis oceanica)
ACATCGAGCTTGTGACATTACTACGTTTGCAACGACGTACATGCGTGTGA
TTGACTGTCATACAGTGTCGCAGCCTTCGCTTTCATCCTCCTCAATCCTG
GCACCCGACACACCACCCGTTCACCCACACAGCAAGGGCCCTGTAGCCCT
CCCCCAGTGACAACGACAACAGTCATCGCCGCCACCGTCATTACTTGATC
ATGCATACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCG
TACTGCACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCC
TCTTTCAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTA
CAAGCTCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGG
GGAGCAAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCA
GCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGC
ATTGTCCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAG
GATAGAGAAGTCAGAAATGGCAGCAGCAGACTTTGGCAAGGCCAGCAGCA
ATAGCAGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCG
GTTCAAGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTC
TGCCTTCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGG
ATACCAACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCC
GCCTGGGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCG
TCCTCGCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCT
TCCCTTCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCG
GCAGCTGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGC
TGGGGGTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCC
CAAACGGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTC
CTGGCGACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGG
TGGGTGTTCCCTCCCTACCTCCCTTCCTCCCCCCCTCCCTCCCTGACCCG
ATAGACGTATTGGGAAAGACCCTCCACTTACTTAGTCCTCCCTTCCCCAC
TACCTCCCTCCCTTCCTCCCTCGCTTTCTCAGACACAGACCTAGAAACCC
TGGATCGTCTAGGGAGGGAGGGAGGGCTGGATCGAAGGAGTGTCTGGAGG
GCCAAACATTACGACGGGGAAAAGTACACCGAGATGAGGTTTCGAAGGGA
TGCTTTGATGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGA
GAGAGGGGCACATGGATATCCTTTTGACGGGACTGAGGAGATGGAGGGAG
GGAGCGAGGGAGGGAGCGAGGTATGAGAAGAAGAAGAAGAAGAAGAAGAA
TAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGAAGTAGAAGAAGG
GAAAGAATAGGATGGCGAAGAAGCCATTTAC

Coding sequence (CDS) from alignment at scaffold_23:110067..111697+

>mRNA_8227 ID=mRNA_8227|Name=jgi.p|Nanoce1779_2|187031|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_23:110067..111697+ (Nannochloropsis oceanica)
ATGCATACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCG
TACTGCACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCC
TCTTTCAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTA
CAAGCTCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGG
GGAGCAAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCA
GCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGC
ATTGTCCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAG
GATAGAGAAGTCAGAAATGGCAGCAGCAGACTTTGGCAAGGCCAGCAGCA
ATAGCAGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCG
GTTCAAGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTC
TGCCTTCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGG
ATACCAACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCC
GCCTGGGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCG
TCCTCGCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCT
TCCCTTCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCG
GCAGCTGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGC
TGGGGGTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCC
CAAACGGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTC
CTGGCGACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGA
CACAGACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTGGATC
GAAGGAGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACACCGAG
ATGAGGTTTCGAAGGGATGCTTTGATGGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGAGGGAGAGAGGGGCACATGGATATCCTTTTGACGGGAC
TGAGGAGATGGAGGGAGGGAGCGAGGGAGGGAGCGAGGTATGAGAAGAAG
AAGAAGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTAGATGCA
TACCCGTTCCTCTCCTTCTCTCTCCGTCCTCCATTCCCTCGCCCGTACTG
CACGCTTGGACACGGCCTCGTTGAGGCGTCTTTCCAAACCCCTCCTCTTT
CAACGCCTCAAGGAAAGCACAAATTTTGACCGACTGCGACGAGTACAAGC
TCGCTCAATCAAGAGGCAGCAGCAGAAGCAACGTGAGGAAGAAGGGGAGC
AAGAGACGAGAACAGCGAGGAGCCACGCCAGCAGCATCATCAGCAGCAGC
ACCAGCAGCAGCACCAGCAGCAGCAGCAGAAGGAAAAGGAACAGCATTGT
CCGTTCTCAGCATCATACGAATGGGAAAGAAGAAGAGGAGGGTAGGATAG
AGAAGTCAGAAATGGCAGCAGCAGACTTTGGCAAGGCCAGCAGCAATAGC
AGCAACAGCAGCAACAGCAGCAGCGATAGATCGAAAGGTGACGCGGTTCA
AGCTGATCTTTCTCCCTCCTCTTCTTCTCCCTCCAGTTCATCCTCTGCCT
TCTTCTCCTCTTCCTCCTTCTCCTACCCCTCCAAACCCAACATGGATACC
AACGACAACAGCGGCGGTGGGAAAATGAGTTCTGCAGAAGAAGCCGCCTG
GGAGGCATTATCAGCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCGTCCTC
GCTCGGTCGATCCCATCCTCCTGACCGAATTAAACTCCTCCTCCTTCCCT
TCCTCCCTCCCTTTCTTTCCCTCATCTACCTCCTCTTCCTCGGCGGCAGC
TGCTTCTACCACTGCTACTACTGCTGTTGCTGCTGGTGCTGTTGCTGGGG
GTAATGGTGGTAAGGATGATGGTCTCATTTTCCGTTTCCTGCGCCCAAAC
GGCTCGACCGTTTCTTACCGTGTTGCCTCCCTGATCGACTACCTCCTGGC
GACGGGAAAATTTGAGGAGCCGGAGACCCGTTTGCCTTTTACCGACACAG
ACCTAGAAACCCTGGATCGTCTAGGGAGGGAGGGAGGGCTGGATCGAAGG
AGTGTCTGGAGGGCCAAACATTACGACGGGGAAAAGTACACCGAGATGAG
GTTTCGAAGGGATGCTTTGATGGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGAAGGGAGGGAGAGAGGGGCACATGGATATCCTTTTGACGGGACTGAGG
AGATGGAGGGAGGGAGCGAGGGAGGGAGCGAGGTATGAGAAGAAGAAGAA
GAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGTAG

Synonyms

Publications