jgi.p|Nanoce1779_2|601191, mRNA_8226 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601191
Unique NamemRNA_8226
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1033
Alignment locationscaffold_23:109229..110261 +

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Properties
Property NameValue
TranscriptId601277
TrackFilteredModels2
ProteinId601191
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:109229..110261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601191gene_8226Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601191mRNA_8226-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8226CDS_8226Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8226 ID=mRNA_8226|Name=jgi.p|Nanoce1779_2|601191|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
AGAACGGCGGCAACACAGCGGCATGCGGCTTGCTGAATGCCCACTCTCAG
AGCAAGCAGCACAAGGCGGGGAATTCCACACCTTCATCTCTTTCTTCAGG
GCCATTAGTCGTCAGTCCCAGTCATCATCTACCCCACGGCTGGAGACTCC
GGCAGCGCCAGCAGTGGCAAGTAACGTGGGAGCATCAACAAGGGCAGGCG
GACCGGTGATTGAATCAGCGGACGAGGACAACGACCACATCGCGGCCGCG
TACATTAAGAGCTTCGTCTCCCTTTCCCAAGACGCTAAACGCTCCACCGC
ACAAGCGCTGAGCCCGACAGTACCGCGATGCGTGGGCTTCAGGCCGACGC
AGCTCATGGGGGTGCCCGGACTTGCTCAATCACGTGCCCCCCGCCTACCT
CTACTCCTCGGGCTCCTAGCACAGCACCAACATGGAACGTCTCACTGGGC
GGGTGCACCTGCGGTAGCACAATTTCCACGTCACGGGTTGCCTGGAGTTT
GTAGAGCTCGGCGAAGACAAGTGCGTCAAGTGCAGCGCATTTGTGATGTC
ACACGTTGCAGCAGCAGTCGCGATCGCTGCCTGCTCGCTTCACCTCTTCA
CCTTGAGTACAAATCACCCACAAAACCACAAGATTGAGTCGTTATCTCCT
GCTTGTGACGAGATAGGTCGCCGTGTACAATACTGCGATGGTGTGGGGCG
GCTTGGCTGAACAAAAATTTGAGCCATGGCCGGGCGGGGAATAGCGTGCG
GCGTTTTGGGTCGGAGTCAACTCCTCAGAAAAAAGCACAATCTAAGGAGA
CTCCCCCTGTACCCCCTCATCAACCGAAGCACGTACGCACATCGAGCTTG
TGACATTACTACGTTTGCAACGACGTACATGCGTGTGATTGACTGTCATA
CAGTGTCGCAGCCTTCGCTTTCATCCTCCTCAATCCTGGCACCCGACACA
CCACCCGTTCACCCACACAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACA
ACGACAACAGTCATCGCCGCCACCGTCATTACT
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protein sequence of jgi.p|Nanoce1779_2|601191

>mRNA_8226-protein ID=mRNA_8226-protein|Name=jgi.p|Nanoce1779_2|601191|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MRLAECPLSEQAAQGGEFHTFISFFRAISRQSQSSSTPRLETPAAPAVAS
NVGASTRAGGPVIESADEDNDHIAAAYIKSFVSLSQDAKRSTAQALSPTV
PRCVGFRPTQLMGVPGLAQSRAPRLPLLLGLLAQHQHGTSHWAGAPAVAQ
FPRHGLPGVCRARRRQVRQVQRICDVTRCSSSRDRCLLASPLHLEYKSPT
KPQD*
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mRNA from alignment at scaffold_23:109229..110261+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8226 ID=mRNA_8226|Name=jgi.p|Nanoce1779_2|601191|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_23:109229..110261+ (Nannochloropsis oceanica)
AGAACGGCGGCAACACAGCGGCATGCGGCTTGCTGAATGCCCACTCTCAG
AGCAAGCAGCACAAGGCGGGGAATTCCACACCTTCATCTCTTTCTTCAGG
GCCATTAGTCGTCAGTCCCAGTCATCATCTACCCCACGGCTGGAGACTCC
GGCAGCGCCAGCAGTGGCAAGTAACGTGGGAGCATCAACAAGGGCAGGCG
GACCGGTGATTGAATCAGCGGACGAGGACAACGACCACATCGCGGCCGCG
TACATTAAGAGCTTCGTCTCCCTTTCCCAAGACGCTAAACGCTCCACCGC
ACAAGCGCTGAGCCCGACAGTACCGCGATGCGTGGGCTTCAGGCCGACGC
AGCTCATGGGGGTGCCCGGACTTGCTCAATCACGTGCCCCCCGCCTACCT
CTACTCCTCGGGCTCCTAGCACAGCACCAACATGGAACGTCTCACTGGGC
GGGTGCACCTGCGGTAGCACAATTTCCACGTCACGGGTTGCCTGGAGTTT
GTAGAGCTCGGCGAAGACAAGTGCGTCAAGTGCAGCGCATTTGTGATGTC
ACACGTTGCAGCAGCAGTCGCGATCGCTGCCTGCTCGCTTCACCTCTTCA
CCTTGAGTACAAATCACCCACAAAACCACAAGATTGAGTCGTTATCTCCT
GCTTGTGACGAGATAGGTCGCCGTGTACAATACTGCGATGGTGTGGGGCG
GCTTGGCTGAACAAAAATTTGAGCCATGGCCGGGCGGGGAATAGCGTGCG
GCGTTTTGGGTCGGAGTCAACTCCTCAGAAAAAAGCACAATCTAAGGAGA
CTCCCCCTGTACCCCCTCATCAACCGAAGCACGTACGCACATCGAGCTTG
TGACATTACTACGTTTGCAACGACGTACATGCGTGTGATTGACTGTCATA
CAGTGTCGCAGCCTTCGCTTTCATCCTCCTCAATCCTGGCACCCGACACA
CCACCCGTTCACCCACACAGCAAGGGCCCTGTAGCCCTCCCCCAGTGACA
ACGACAACAGTCATCGCCGCCACCGTCATTACT
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Coding sequence (CDS) from alignment at scaffold_23:109229..110261+

>mRNA_8226 ID=mRNA_8226|Name=jgi.p|Nanoce1779_2|601191|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_23:109229..110261+ (Nannochloropsis oceanica)
ATGCGGCTTGCTGAATGCCCACTCTCAGAGCAAGCAGCACAAGGCGGGGA
ATTCCACACCTTCATCTCTTTCTTCAGGGCCATTAGTCGTCAGTCCCAGT
CATCATCTACCCCACGGCTGGAGACTCCGGCAGCGCCAGCAGTGGCAAGT
AACGTGGGAGCATCAACAAGGGCAGGCGGACCGGTGATTGAATCAGCGGA
CGAGGACAACGACCACATCGCGGCCGCGTACATTAAGAGCTTCGTCTCCC
TTTCCCAAGACGCTAAACGCTCCACCGCACAAGCGCTGAGCCCGACAGTA
CCGCGATGCGTGGGCTTCAGGCCGACGCAGCTCATGGGGGTGCCCGGACT
TGCTCAATCACGTGCCCCCCGCCTACCTCTACTCCTCGGGCTCCTAGCAC
AGCACCAACATGGAACGTCTCACTGGGCGGGTGCACCTGCGGTAGCACAA
TTTCCACGTCACGGGTTGCCTGGAGTTTGTAGAGCTCGGCGAAGACAAGT
GCGTCAAGTGCAGCGCATTTGTGATGTCACACGTTGCAGCAGCAGTCGCG
ATCGCTGCCTGCTCGCTTCACCTCTTCACCTTGAGTACAAATCACCCACA
AAACCACAAGATTGA
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Synonyms
Publications