jgi.p|Nanoce1779_2|186794, mRNA_8224 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|186794
Unique NamemRNA_8224
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_23:100150..101058 -

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Properties
Property NameValue
TranscriptId186880
TrackFilteredModels2
ProteinId186794
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:100150..101058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186794gene_8224Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186794mRNA_8224-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8224CDS_8224Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8224 ID=mRNA_8224|Name=jgi.p|Nanoce1779_2|186794|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
TGTGACGCCTTTCTGTGTGCAGGCGCTAAGCCCCTCCCTTACCTGTCCCA
TGTGCCTGCTTGTCCCTTTCATTTGAATCGAAGTCGTTAATGCTGTTATT
GATATTGCTGCTGTTGCTACTACCCCACAAGAAGAGAAGGGAAAGAAGAC
TCCTCCCTCTACCCTTCGACAGCACTACTTACAGCGATGTTCCTTCCTTT
GCCTTTTCTCTGGAAGAAAACAAACGATTGATAGGCACTCACACACGTAA
ACGCATTCCTTCCCTCCCTTCCTACCTTCCTCCCTCCTTGATATCTCTTT
TCCTTTTTCTCTCCTCGGTTTTGTCTGTCGGGCTTTTTTTCCGCGTTTTG
CTTTTTCAAATTTTCCTTCGTCGATTCGGTGTCTGTGAGGATGCACATAC
TCTTCTTGCTTTTATCTTGTCACGGGCCTGCTTTGTGTATTTTATCTTCT
CTATCTCTAACCCCATTCATTCTCATTCTCTTCCTCTCTTTCTCACGCTC
ACTCACGCGTCTAAAACACATTTCCACAGGAGAAAACAAACAGTGAGAGA
AATGCCAAGAATTCAGACACACCGAAAACTTCTCTCTCTCTCGCATCGTC
TCTCTAACTATCTCTCTCTCTCTCGTTAATCTCTCCTGCCCCTGCGTCTG
ACTTTTCCTCTCCAGTCGAGCTTCCTTGCTCCCTCCTCTCTCCTCTCCCT
CTGATTCGTCGTACACAAAGTCTAAAAACAATAACATGAAAATTATCATC
ATTATTGTCTCTCTTGTTTCCATGAAGCTG
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protein sequence of jgi.p|Nanoce1779_2|186794

>mRNA_8224-protein ID=mRNA_8224-protein|Name=jgi.p|Nanoce1779_2|186794|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MLLLILLLLLLPHKKRRERRLLPLPFDSTTYSDVPSFAFSLEENKRLIGT
HTRKRIPSLPSYLPPSLISLFLFLSSVLSVGLFFRVLLFQIFLRRFGVCE
DAHTLLAFILSRACFVYFIFSISNPIHSHSLPLFLTLTHASKTHFHRRKQ
TVREMPRIQTHRKLLSLSHRLSNYLSLSR*
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mRNA from alignment at scaffold_23:100150..101058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8224 ID=mRNA_8224|Name=jgi.p|Nanoce1779_2|186794|organism=Nannochloropsis oceanica|type=mRNA|length=909bp|location=Sequence derived from alignment at scaffold_23:100150..101058- (Nannochloropsis oceanica)
TGTGACGCCTTTCTGTGTGCAGGCGCTAAGCCCCTCCCTTACCTGTCCCA
TGTGCCTGCTTGTCCCTTTCATTTGAATCGAAGTCGTTAATGCTGTTATT
GATATTGCTGCTGTTGCTACTACCCCACAAGAAGAGAAGGGAAAGAAGAC
TCCTCCCTCTACCCTTCGACAGCACTACTTACAGCGATGTTCCTTCCTTT
GCCTTTTCTCTGGAAGAAAACAAACGATTGATAGGCACTCACACACGTAA
ACGCATTCCTTCCCTCCCTTCCTACCTTCCTCCCTCCTTGATATCTCTTT
TCCTTTTTCTCTCCTCGGTTTTGTCTGTCGGGCTTTTTTTCCGGTGAATG
TGCGTGGAGGAGTCCTCCTGGTGATGACATGATGGATGACCTCTCTGTCT
CTACTTTGCTTGTCGCTTTCTTCGTTTTGCTTTTTCAAATTTTCCTTCGT
CGATTCGGTGTCTGTGAGGATGCACATACTCTTCTTGCTTTTATCTTGTC
ACGGGCCTGCTTTGTGTATTTTATCTTCTCCCTCCCTCCCTCCTTTCTCT
CCTCTACCTATACCGTATTTCTTTCTTTTCTATCTCTAACCCCATTCATT
CTCATTCTCTTCCTCTCTTTCTCACGCTCACTCACGCGTCTAAAACACAT
TTCCACAGGAGAAAACAAACAGTGAGAGAAATGCCAAGAATTCAGACACA
CCGAAAACTTCTCTCTCTCTCGCATCGTCTCTCTAACTATCTCTCTCTCT
CTCGTTAATCTCTCCTGCCCCTGCGTCTGACTTTTCCTCTCCAGTCGAGC
TTCCTTGCTCCCTCCTCTCTCCTCTCCCTCTGATTCGTCGTACACAAAGT
CTAAAAACAATAACATGAAAATTATCATCATTATTGTCTCTCTTGTTTCC
ATGAAGCTG
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Coding sequence (CDS) from alignment at scaffold_23:100150..101058-

>mRNA_8224 ID=mRNA_8224|Name=jgi.p|Nanoce1779_2|186794|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_23:100150..101058- (Nannochloropsis oceanica)
TCTATCTCTAACCCCATTCATTCTCATTCTCTTCCTCTCTTTCTCACGCT
CACTCACGCGTCTAAAACACATTTCCACAGGAGAAAACAAACAGTGAGAG
AAATGCCAAGAATTCAGACACACCGAAAACTTCTCTCTCTCTCGCATCGT
CTCTCTAACTATCTCTCTCTCTCTCGTTAACGTTTTGCTTTTTCAAATTT
TCCTTCGTCGATTCGGTGTCTGTGAGGATGCACATACTCTTCTTGCTTTT
ATCTTGTCACGGGCCTGCTTTGTGTATTTTATCTTCATGCTGTTATTGAT
ATTGCTGCTGTTGCTACTACCCCACAAGAAGAGAAGGGAAAGAAGACTCC
TCCCTCTACCCTTCGACAGCACTACTTACAGCGATGTTCCTTCCTTTGCC
TTTTCTCTGGAAGAAAACAAACGATTGATAGGCACTCACACACGTAAACG
CATTCCTTCCCTCCCTTCCTACCTTCCTCCCTCCTTGATATCTCTTTTCC
TTTTTCTCTCCTCGGTTTTGTCTGTCGGGCTTTTTTTCCGTCTATCTCTA
ACCCCATTCATTCTCATTCTCTTCCTCTCTTTCTCACGCTCACTCACGCG
TCTAAAACACATTTCCACAGGAGAAAACAAACAGTGAGAGAAATGCCAAG
AATTCAGACACACCGAAAACTTCTCTCTCTCTCGCATCGTCTCTCTAACT
ATCTCTCTCTCTCTCGTTAACGTTTTGCTTTTTCAAATTTTCCTTCGTCG
ATTCGGTGTCTGTGAGGATGCACATACTCTTCTTGCTTTTATCTTGTCAC
GGGCCTGCTTTGTGTATTTTATCTTCATGCTGTTATTGATATTGCTGCTG
TTGCTACTACCCCACAAGAAGAGAAGGGAAAGAAGACTCCTCCCTCTACC
CTTCGACAGCACTACTTACAGCGATGTTCCTTCCTTTGCCTTTTCTCTGG
AAGAAAACAAACGATTGATAGGCACTCACACACGTAAACGCATTCCTTCC
CTCCCTTCCTACCTTCCTCCCTCCTTGATATCTCTTTTCCTTTTTCTCTC
CTCGGTTTTGTCTGTCGGGCTTTTTTTCCGTCTATCTCTAACCCCATTCA
TTCTCATTCTCTTCCTCTCTTTCTCACGCTCACTCACGCGTCTAAAACAC
ATTTCCACAGGAGAAAACAAACAGTGAGAGAAATGCCAAGAATTCAGACA
CACCGAAAACTTCTCTCTCTCTCGCATCGTCTCTCTAACTATCTCTCTCT
CTCTCGTTAACGTTTTGCTTTTTCAAATTTTCCTTCGTCGATTCGGTGTC
TGTGAGGATGCACATACTCTTCTTGCTTTTATCTTGTCACGGGCCTGCTT
TGTGTATTTTATCTTCATGCTGTTATTGATATTGCTGCTGTTGCTACTAC
CCCACAAGAAGAGAAGGGAAAGAAGACTCCTCCCTCTACCCTTCGACAGC
ACTACTTACAGCGATGTTCCTTCCTTTGCCTTTTCTCTGGAAGAAAACAA
ACGATTGATAGGCACTCACACACGTAAACGCATTCCTTCCCTCCCTTCCT
ACCTTCCTCCCTCCTTGATATCTCTTTTCCTTTTTCTCTCCTCGGTTTTG
TCTGTCGGGCTTTTTTTCCG
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Synonyms
Publications