jgi.p|Nanoce1779_2|532252, mRNA_8222 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532252
Unique Name	mRNA_8222
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1302
Alignment location	scaffold_23:93226..95256 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532338
Track	FilteredModels2
ProteinId	532252

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:93226..95256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532252	gene_8222	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532252	mRNA_8222-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8222	CDS_8222	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:93226..95256+
coding sequence from alignment at scaffold_23:93226..95256+

mRNA sequence

>mRNA_8222 ID=mRNA_8222|Name=jgi.p|Nanoce1779_2|532252|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGTCCACTTTCCCCTTTGATACTCACTCAAACACCCACCTGCTCATCCA
CATTCTGGTGATAATCATCACCCGAGCGGCCTTTGCTTTGGGGCAAAATA
CATGCAGTGCTGCCGTGTCACACAAAAAGAAAGACACCAACACATACTTT
TTTCTCTCCTTTTCTCACTTCTTTCCCTCCTCCCTTCCTCCAGGCGGCGA
CGCTCATCCCAACGGTCTTCGATACGGAGCAACGGCCATGCAGGGCTGGC
GTGTCAAAATGGAAGACGCACACGTAGCACGGATATGCCTCAATGAGGAT
GAGGCAGCGAGTGAGGGAGGGAGGGAGGGCGAGGGGGGGAGGGAGGGAAG
GCTGGCGTTGTTTGGTGTGTTTGATGGGCATGGAGGGAGCGAGGTGGCCA
AATATTGCGCGAAGCATATCGATAGGATCCTGAAGGAGAGCAAAGGCTGG
AAGGAGGGCGGGCGGGTGGGAGGGGGAAAGGGAAGAGATGTTGAGGGAGC
TCTGAAGGAAGCTTTTTTGAGGCTTGATGTTATGCTAGGGGCAGAAGAGG
GCCAGGAAGAGTTAAGGGAGATTGTGAGGGAGGAAAGAGAGGGGGGAAGG
AGCACGGAGCCGGAGGTAAGCATAGAGGAGGTGGCGGAGCAGACAGGGTT
GTCTCTGGACGGGAGATTATACGTGGCGAACGCGGGGGATTCCCGGTGTG
TGTTGAGCAGGGGCGGGGTCGCTGTGGAGCTAAGCCGAGACCACAAGCCA
GAGGACGTGGAGGAGAAGGCTCGCATTGAAGCAGCGGGGGGCAGTGTGGG
GGAGGACGGTCGGGTAGAAGGGAATTTGAACCTGAGCCGGGCCATTGGAG
ACTTGGCGTACAAGCACAAGGAGGGCTTGTCGGCGGAGAGGCAGATGATC
AGCGCATACCCGGATGTGAGGGTCGAGGGACTCCGGGCGGGGGAGGACGA
GTTTCTGGTGGTGGCATGCGATGGCATTTGGAATGTGCTGTCGAGTCAGG
AGGTGGTGGACATGGTAAGGGAGGGCTTGAGGGAGGGAGGGAGGGAGGGG
GAGGGTAGGATCTCGAAGGTCTGCGAGGCGGTGTGTGATAGATGCTGTGA
CGGAGAGATGGGGGAGGAGAGCGATGGATCGGGAAGTGACAACATGACCA
TGATGGTCGTGCTTTTTCCAAGAGGGAGGAGGGAGGGGGGGAAGAAGGGG
AGGGAGGGAGGACGAGCCGGATGTTTGAAGGAATGTGTGCCGCATTGGAG
AGAAAGGGCAACTTCGCCATTGACTTTGCTGGGAGAAGCGGGAGAGGCAT
AG

protein sequence of jgi.p|Nanoce1779_2|532252

>mRNA_8222-protein ID=mRNA_8222-protein|Name=jgi.p|Nanoce1779_2|532252|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSTFPFDTHSNTHLLIHILVIIITRAAFALGQNTCSAAVSHKKKDTNTYF
FLSFSHFFPSSLPPGGDAHPNGLRYGATAMQGWRVKMEDAHVARICLNED
EAASEGGREGEGGREGRLALFGVFDGHGGSEVAKYCAKHIDRILKESKGW
KEGGRVGGGKGRDVEGALKEAFLRLDVMLGAEEGQEELREIVREEREGGR
STEPEVSIEEVAEQTGLSLDGRLYVANAGDSRCVLSRGGVAVELSRDHKP
EDVEEKARIEAAGGSVGEDGRVEGNLNLSRAIGDLAYKHKEGLSAERQMI
SAYPDVRVEGLRAGEDEFLVVACDGIWNVLSSQEVVDMVREGLREGGREG
EGRISKVCEAVCDRCCDGEMGEESDGSGSDNMTMMVVLFPRGRREGGKKG
REGGRAGCLKECVPHWRERATSPLTLLGEAGEA*

mRNA from alignment at scaffold_23:93226..95256+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8222 ID=mRNA_8222|Name=jgi.p|Nanoce1779_2|532252|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at scaffold_23:93226..95256+ (Nannochloropsis oceanica)
ATGTCCACTTTCCCCTTTGATACTCACTCAAACACCCACCTGCTCATCCA
CATTCTGGTGATAATCATCACCCGAGCGGCCTTTGCTTTGGGGCAAAATA
CATGCAGTGCTGCCGTGTCACACAAAAAGAAAGACACCAACACATACTTT
TTTCTCTCCTTTTCTCACTTCTTTCCCTCCTCCCTTCCTCCAGGCGGCGA
CGCTCATCCCAACGGTCTTCGATACGGAGCAACGGCCATGCAGGGCTGGC
GTGTCAAAATGGAAGACGCACACGTAGCACGGATATGCCTCAATGAGGAT
GAGGCAGCGAGTGAGGGAGGGAGGGAGGGCGAGGGGGGGAGGGAGGGAAG
GCTGGCGTTGTTTGGTGTGTTTGATGGGCATGGAGGGAGCGAGGTGGCCA
AATATTGCGCGAAGCATATCGATAGGATCCTGAAGGAGAGCAAAGGCTGG
AAGGAGGGCGGGCGGGTGGGAGGGGGAAAGGGAAGAGATGTTGAGGGAGC
TCTGAAGGAAGCTTTTTTGAGGCTTGATGTTATGCTAGGGGCAGAAGAGG
GCCAGGAAGAGTTAAGGGAGATTGTGAGGGAGGAAAGAGAGGGGGGAAGG
AGCACGGAGCCGGAGGTAAGCATAGAGGAGGTGGCGGAGCAGACAGGGTT
GTCTCTGGAGTCGATCAGGAGGTACGTTTTGGAGGCTTGGAGGAAGAGGA
GGGAGGCGGGTAGCGCCGCTGAGGGGGAGGAGGAGGGGGAAGGGGAGGAG
AAAGGGGAGGAGGAGGAGGAAGAATGCGGTAGTCTGAAGAGAAAGGACAA
AGGGAAGGTAAGGGGGGATGTGGTGGTTGCTGATGCAGTAGTGAGCAGCA
GCAGCAGCAGTAGCAGCAGCAGCAGACAGAGAATAAAAAGGCATCGGACG
GAGGAGGGGGGAAAGGAGGGAGGGATGGAGGGAGGGCTGGAAGAATTGAC
CACCACCACCACCACCACGTCGACGACAGTGGAGGTGTCGATGGAGGAAG
AGGAGGGCCAAGGGATGGTGGTTGTCTTCGAGCCTGTGGGCACGATTGGA
AATGGCAGCAGCATCAGCAGCAGCAGCAGTAGTACGTCTACCGTGGTTGC
TGATGCAGTAGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACG
ACAGTCAGGAAAAGAACAACAATGGAATACTCGAGGAGGAGAAAGAGGAA
GAGGAAGCGACGGAAGGAGGGACGGAGGACGGGTCCGAGGAGAACGAGGA
GGAGGAAGAAGCGGCCATCAGGAGCATCAATTTCCACCGAATGAAAGAGC
TTGTCATGAAACAACGACCCGGCTTTGACTCGGGTTGTACGGCCGTGGCG
GTTGTCTACGAGGAAGGGGGGGCGGGCGGGGGGGAGAGCGGGAGATTATA
CGTGGCGAACGCGGGGGATTCCCGGTGTGTGTTGAGCAGGGGCGGGGTCG
CTGTGGAGCTAAGCCGAGACCACAAGCCAGAGGACGTGGAGGAGAAGGCT
CGCATTGAAGCAGCGGGGGGCAGTGTGGGGGAGGACGGTCGGGTAGAAGG
GAATTTGAACCTGAGCCGGGCCATTGGAGACTTGGCGTACAAGCACAAGG
AGGGCTTGTCGGCGGAGAGGCAGATGATCAGCGCATACCCGGATGTGAGG
GTCGAGGGACTCCGGGCGGGGGAGGACGAGTTTCTGGTGGTGGCATGCGA
TGGCATTTGGAATGTGCTGTCGAGTCAGGAGGTGGTGGACATGGTAAGGG
AGGGCTTGAGGGAGGGAGGGAGGGAGGGGGAGGGTAGGATCTCGAAGGTC
TGCGAGGCGGTGTGTGATAGATGCTGTGACGGAGAGATGGGGGAGGAGAG
CGATGGATCGGGAAGTGACAACATGACCATGATGGTCGTGCTTTTTCCAA
GAGGGAGGAGGGAGGGGGGGAAGAAGGGGAGGGAGGGAGGACGAGCCGGA
TGTTTGAAGGAATGTGTGCCGCATTGGAGAGAAAGGGCAACTTCGCCATT
GACTTTGCTGGGAGAAGCGGGAGAGGCATAG

Coding sequence (CDS) from alignment at scaffold_23:93226..95256+

>mRNA_8222 ID=mRNA_8222|Name=jgi.p|Nanoce1779_2|532252|organism=Nannochloropsis oceanica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_23:93226..95256+ (Nannochloropsis oceanica)
ATGTCCACTTTCCCCTTTGATACTCACTCAAACACCCACCTGCTCATCCA
CATTCTGGTGATAATCATCACCCGAGCGGCCTTTGCTTTGGGGCAAAATA
CATGCAGTGCTGCCGTGTCACACAAAAAGAAAGACACCAACACATACTTT
TTTCTCTCCTTTTCTCACTTCTTTCCCTCCTCCCTTCCTCCAGGCGGCGA
CGCTCATCCCAACGGTCTTCGATACGGAGCAACGGCCATGCAGGGCTGGC
GTGTCAAAATGGAAGACGCACACGTAGCACGGATATGCCTCAATGAGGAT
GAGGCAGCGAGTGAGGGAGGGAGGGAGGGCGAGGGGGGGAGGGAGGGAAG
GCTGGCGTTGTTTGGTGTGTTTGATGGGCATGGAGGGAGCGAGGTGGCCA
AATATTGCGCGAAGCATATCGATAGGATCCTGAAGGAGAGCAAAGGCTGG
AAGGAGGGCGGGCGGGTGGGAGGGGGAAAGGGAAGAGATGTTGAGGGAGC
TCTGAAGGAAGCTTTTTTGAGGCTTGATGTTATGCTAGGGGCAGAAGAGG
GCCAGGAAGAGTTAAGGGAGATTGTGAGGGAGGAAAGAGAGGGGGGAAGG
AGCACGGAGCCGGAGGTAAGCATAGAGGAGGTGGCGGAGCAGACAGGGTT
GTCTCTGGACGGGAGATTATACGTGGCGAACGCGGGGGATTCCCGGTGTG
TGTTGAGCAGGGGCGGGGTCGCTGTGGAGCTAAGCCGAGACCACAAGCCA
GAGGACGTGGAGGAGAAGGCTCGCATTGAAGCAGCGGGGGGCAGTGTGGG
GGAGGACGGTCGGGTAGAAGGGAATTTGAACCTGAGCCGGGCCATTGGAG
ACTTGGCGTACAAGCACAAGGAGGGCTTGTCGGCGGAGAGGCAGATGATC
AGCGCATACCCGGATGTGAGGGTCGAGGGACTCCGGGCGGGGGAGGACGA
GTTTCTGGTGGTGGCATGCGATGGCATTTGGAATGTGCTGTCGAGTCAGG
AGGTGGTGGACATGGTAAGGGAGGGCTTGAGGGAGGGAGGGAGGGAGGGG
GAGGGTAGGATCTCGAAGGTCTGCGAGGCGGTGTGTGATAGATGCTGTGA
CGGAGAGATGGGGGAGGAGAGCGATGGATCGGGAAGTGACAACATGACCA
TGATGGTCGTGCTTTTTCCAAGAGGGAGGAGGGAGGGGGGGAAGAAGGGG
AGGGAGGGAGGACGAGCCGGATGTTTGAAGGAATGTGTGCCGCATTGGAG
AGAAAGGGCAACTTCGCCATTGACTTTGCTGGGAGAAGCGGGAGAGGCAT
AGATGTCCACTTTCCCCTTTGATACTCACTCAAACACCCACCTGCTCATC
CACATTCTGGTGATAATCATCACCCGAGCGGCCTTTGCTTTGGGGCAAAA
TACATGCAGTGCTGCCGTGTCACACAAAAAGAAAGACACCAACACATACT
TTTTTCTCTCCTTTTCTCACTTCTTTCCCTCCTCCCTTCCTCCAGGCGGC
GACGCTCATCCCAACGGTCTTCGATACGGAGCAACGGCCATGCAGGGCTG
GCGTGTCAAAATGGAAGACGCACACGTAGCACGGATATGCCTCAATGAGG
ATGAGGCAGCGAGTGAGGGAGGGAGGGAGGGCGAGGGGGGGAGGGAGGGA
AGGCTGGCGTTGTTTGGTGTGTTTGATGGGCATGGAGGGAGCGAGGTGGC
CAAATATTGCGCGAAGCATATCGATAGGATCCTGAAGGAGAGCAAAGGCT
GGAAGGAGGGCGGGCGGGTGGGAGGGGGAAAGGGAAGAGATGTTGAGGGA
GCTCTGAAGGAAGCTTTTTTGAGGCTTGATGTTATGCTAGGGGCAGAAGA
GGGCCAGGAAGAGTTAAGGGAGATTGTGAGGGAGGAAAGAGAGGGGGGAA
GGAGCACGGAGCCGGAGGTAAGCATAGAGGAGGTGGCGGAGCAGACAGGG
TTGTCTCTGGACGGGAGATTATACGTGGCGAACGCGGGGGATTCCCGGTG
TGTGTTGAGCAGGGGCGGGGTCGCTGTGGAGCTAAGCCGAGACCACAAGC
CAGAGGACGTGGAGGAGAAGGCTCGCATTGAAGCAGCGGGGGGCAGTGTG
GGGGAGGACGGTCGGGTAGAAGGGAATTTGAACCTGAGCCGGGCCATTGG
AGACTTGGCGTACAAGCACAAGGAGGGCTTGTCGGCGGAGAGGCAGATGA
TCAGCGCATACCCGGATGTGAGGGTCGAGGGACTCCGGGCGGGGGAGGAC
GAGTTTCTGGTGGTGGCATGCGATGGCATTTGGAATGTGCTGTCGAGTCA
GGAGGTGGTGGACATGGTAAGGGAGGGCTTGAGGGAGGGAGGGAGGGAGG
GGGAGGGTAGGATCTCGAAGGTCTGCGAGGCGGTGTGTGATAGATGCTGT
GACGGAGAGATGGGGGAGGAGAGCGATGGATCGGGAAGTGACAACATGAC
CATGATGGTCGTGCTTTTTCCAAGAGGGAGGAGGGAGGGGGGGAAGAAGG
GGAGGGAGGGAGGACGAGCCGGATGTTTGAAGGAATGTGTGCCGCATTGG
AGAGAAAGGGCAACTTCGCCATTGACTTTGCTGGGAGAAGCGGGAGAGGC
ATAG

Synonyms

Publications