jgi.p|Nanoce1779_2|601161, mRNA_8220 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601161
Unique Name	mRNA_8220
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1019
Alignment location	scaffold_23:86877..87895 +

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Properties


Property Name	Value
TranscriptId	601247
Track	FilteredModels2
ProteinId	601161

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:86877..87895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601161	gene_8220	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601161	mRNA_8220-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8220	CDS_8220	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:86877..87895+
coding sequence from alignment at scaffold_23:86877..87895+

mRNA sequence

>mRNA_8220 ID=mRNA_8220|Name=jgi.p|Nanoce1779_2|601161|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp
GAAGGTGGGGGGGGAAGGTAGGTTGAGGTGGCTAATGGGTTTGTGGGAGG
GTCCGCATTGGGCATGTGTGTATGTGTACATGAGGAAGAAAGAAGTAGAA
TTAGAAGCGAGAAAAAGAGATGGTATGCTGACACAAGAAAGAAAGTGTTT
AAAATTTATGCCTCGAAGTAATGTCTCCATAAGAAGCCGTTGAGTGAAGC
ATGTTGTTGGGGATAAGTCGGGGCGTGATAAATGGAGCTCCCCCCGAACC
ATTTAAAGCATACTAGCGCGGATTCGTTCGAATTTCTTGAGGATGCTGGC
TACTCTCTCGGGCTCTGTGATGCCACTCCTGTTGGAGGGTGGGATGTCTG
CTTCGCTCATGCCCAGCTCCATGTGTGACGAACATTCCCGTCCCCCGCTT
CAAGCTCAACGGTCGTGTCGACCGGACCCAGATGCTGCCTGCTGTTGGTT
GGCTGACTTGTTGGATGGTTTGTCAGCATGCACCTTGTCGTACTTGGGGT
CACTGTAATGGCTCGCCCACCTTCTTTCCACTACCTGCGCTCTTGGCAGG
GGGCATACAAACTCGACAGTCATAAAGCAACGCCCCCCATACATGCAACG
AGCAGCTTCGATTAAGAGCTCCCTTTATCCCATCATACTCCATTTAGACA
CCGCATACTAGCCCAACGTACAAAGCACAGAGGATTCCACAACTGCTCTA
CCTCTCCTCCTCGGGCTCATCTGTGGTTTTCGCGTCACAAATCCTGCCTC
GCGTTGTCGCCCGACAATCATGCCGTCATCACCTTCACCTTCATCAACTT
TGCCTACTCCTACCGCCGCCTCAACCATCACCACCGACCCGCCCGAAGCC
TCCACTTCTCTGTCTCCTTTACCAACGTCTCCCTGCGCTGCTTCTCCGTA
CCTTAATAATGCCGGGGTCGTCTTCCCCTACACGATCACTTCCACCGACA
ACACCCTCCTCCACCAAGGCCTCCGTGCCGTCGCCCGTGAAATCGTCCCC
GGCTGGGCCACCCTCCTTC

protein sequence of jgi.p|Nanoce1779_2|601161

>mRNA_8220-protein ID=mRNA_8220-protein|Name=jgi.p|Nanoce1779_2|601161|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MLATLSGSVMPLLLEGGMSASLMPSSMCDEHSRPPLQAQRSCRPDPDAAC
CWLADLLDGLSACTLSYLGSL*

mRNA from alignment at scaffold_23:86877..87895+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8220 ID=mRNA_8220|Name=jgi.p|Nanoce1779_2|601161|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at scaffold_23:86877..87895+ (Nannochloropsis oceanica)
GAAGGTGGGGGGGGAAGGTAGGTTGAGGTGGCTAATGGGTTTGTGGGAGG
GTCCGCATTGGGCATGTGTGTATGTGTACATGAGGAAGAAAGAAGTAGAA
TTAGAAGCGAGAAAAAGAGATGGTATGCTGACACAAGAAAGAAAGTGTTT
AAAATTTATGCCTCGAAGTAATGTCTCCATAAGAAGCCGTTGAGTGAAGC
ATGTTGTTGGGGATAAGTCGGGGCGTGATAAATGGAGCTCCCCCCGAACC
ATTTAAAGCATACTAGCGCGGATTCGTTCGAATTTCTTGAGGATGCTGGC
TACTCTCTCGGGCTCTGTGATGCCACTCCTGTTGGAGGGTGGGATGTCTG
CTTCGCTCATGCCCAGCTCCATGTGTGACGAACATTCCCGTCCCCCGCTT
CAAGCTCAACGGTCGTGTCGACCGGACCCAGATGCTGCCTGCTGTTGGTT
GGCTGACTTGTTGGATGGTTTGTCAGCATGCACCTTGTCGTACTTGGGGT
CACTGTAATGGCTCGCCCACCTTCTTTCCACTACCTGCGCTCTTGGCAGG
GGGCATACAAACTCGACAGTCATAAAGCAACGCCCCCCATACATGCAACG
AGCAGCTTCGATTAAGAGCTCCCTTTATCCCATCATACTCCATTTAGACA
CCGCATACTAGCCCAACGTACAAAGCACAGAGGATTCCACAACTGCTCTA
CCTCTCCTCCTCGGGCTCATCTGTGGTTTTCGCGTCACAAATCCTGCCTC
GCGTTGTCGCCCGACAATCATGCCGTCATCACCTTCACCTTCATCAACTT
TGCCTACTCCTACCGCCGCCTCAACCATCACCACCGACCCGCCCGAAGCC
TCCACTTCTCTGTCTCCTTTACCAACGTCTCCCTGCGCTGCTTCTCCGTA
CCTTAATAATGCCGGGGTCGTCTTCCCCTACACGATCACTTCCACCGACA
ACACCCTCCTCCACCAAGGCCTCCGTGCCGTCGCCCGTGAAATCGTCCCC
GGCTGGGCCACCCTCCTTC

Coding sequence (CDS) from alignment at scaffold_23:86877..87895+

>mRNA_8220 ID=mRNA_8220|Name=jgi.p|Nanoce1779_2|601161|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_23:86877..87895+ (Nannochloropsis oceanica)
ATGCTGGCTACTCTCTCGGGCTCTGTGATGCCACTCCTGTTGGAGGGTGG
GATGTCTGCTTCGCTCATGCCCAGCTCCATGTGTGACGAACATTCCCGTC
CCCCGCTTCAAGCTCAACGGTCGTGTCGACCGGACCCAGATGCTGCCTGC
TGTTGGTTGGCTGACTTGTTGGATGGTTTGTCAGCATGCACCTTGTCGTA
CTTGGGGTCACTGTAA

Synonyms

Publications