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Properties
| Property Name | Value |
|---|
| TranscriptId | 574344 |
| Track | FilteredModels2 |
| ProteinId | 574258 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:511368..513902 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_822 ID=mRNA_822|Name=jgi.p|Nanoce1779_2|574258|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp
ACAGGAATTAAGCCACGACCGAGGCCAGGTACCCTGCCGCACGATGGACA
AGCGGAAATTTCTGTTTAAGAAGGCCATAGATGGAGACTCCTGCCGTCGC
CGCCGCGAGGAGCAGCAAGTGCAAATCCGCAAGCAGAAGCGTGAAGAGTC
CTTGTCGCAACGCCGGCGCATGGACACCACGTCTGCTCATACACCAGCCG
CCGCGGGCTCCTTCGGGCCTTACGTCGGCATAGGCGTTGCGGGGGCGGGT
GCTAACGGCGTACCCCCCTCACTGCAGGACTTGCCGATGTACGCCCTCGA
CATGCGCTCGGGGGACGCCGCCCGTGAACTGGAAGCGACACGGGCAGTGC
GCAAACTCTTGTCAGTCCAACGTAACCCGCCCGTGGAGCAAATTCTGGCC
CACGGCTTTGTCCCCATGCTCGTCGGGCAATTAACCCGAGAAAACGCCTC
TTCCATCCTCCTCTTTGAGGCCTCGTGGGCACTTACAAATGTCGGCTCTA
CTAATTATACACGTGCCTTGGTCGACGCCGGAGCCATCCCACCTTTAACG
CGCCTACTCCTCCACCCTTGCCCCGATGTCCGCGAGCAATGCGCATGGGC
TATGGGGAACATCAGTGGCGATTGTCCCGAGCTAAGGGACCACGTCCTTA
CCCACGGAGCCCTTCCTCCCCTTCTGCAGAATCTCCTCTCTCCAGCCTGT
CTCTCCATGTCGCGTAACTGTACCTGGGCGCTGTCGAACTTGTGCCGCGG
GAAGCCTCAACCCCACCTGAAACTCCTCCGTCCCGCCCTGCCTGTCCTAG
CCCGGATCCTCGCCTCGTGCACGGATTCCGAGTGTCTGCAGGACGCCGGG
TGGGCCTTATCCTATCTCTGTGACGGCGACGCGAAGAGGATCGACGCGGT
GATTGAGACGCCGGGGGTATGTGCGGATTTGGTGCGGCACTTGACGCATG
AGAATGCTGGTGTGCTCACGCCCGTAGTTAGGACGCTCGGGAACATCGTC
TCGGGTGACGATAACCATACACAAGCGGTTATCGATGCCGGAGCCCTCCT
CTACATGCCCTCCCTCCTCAAGAACAGCAAAAAGAACATCCGAAAAGAGA
TCATGTGGCTCCTCAGTAATATCGCGGCTGGGAACAGGGAGCAAGTGCAT
GCGCTGGCTATGACAAAAGGCCTTATCTCTATGGTGCTCATGCAGATGGC
CACGGCCGAGTGGGAGGTTGTAAAGGAGGCGATCTGGGTCGTGGCGAACT
TCGCGACGGGGGGGAATGCACAGGTGGTTTAATTTAATTTATATATATAA
ATCTATATACACGCACTCATCACATATATATGTATATATACATATGTCTT
AATTTATCATTTTGATGGTTTGATCAATGTTTTTTATTGTTGTGATGATG
ATGATGATGATGATGATGATGATGATGACGATGATGTGCGATTATGGTCT
GTTCTTCACTTAATTTCGATTTTCAATTTTAACACTGTCCTGCGTTCCTC
CCTCCCTCTCTCCCTCCCTCAGCACGTGCAGCTCCTGGTGGAGCTAGGCG
CCCTGAAGACCCTCTGTGACCTTCTAGAAGCCGGCGACTCCAAGGTGGTG
GACATTACCCTCGACGCCGTGGAGGCAATCTTGAAGCAAGGCTCTACTGC
ATCTGCTGCTGCCAGTGCTGCTGCTGCAGGCGCTGTCGGTGGGGGAGGGT
ACTTGCAGTTGTTTTACGAAGCGGACGGACCAGAGAGGCTGGCGAAGCTG
CAGGAGCATGCGAGTGACAAGATTTATCACAGGGCAGTGCGCATGATTGA
GCAGTATGTAGGGTTGGAAGAGGAGGAGGAGGAGGAGGGGGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|574258 >mRNA_822-protein ID=mRNA_822-protein|Name=jgi.p|Nanoce1779_2|574258|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MDKRKFLFKKAIDGDSCRRRREEQQVQIRKQKREESLSQRRRMDTTSAHT
PAAAGSFGPYVGIGVAGAGANGVPPSLQDLPMYALDMRSGDAARELEATR
AVRKLLSVQRNPPVEQILAHGFVPMLVGQLTRENASSILLFEASWALTNV
GSTNYTRALVDAGAIPPLTRLLLHPCPDVREQCAWAMGNISGDCPELRDH
VLTHGALPPLLQNLLSPACLSMSRNCTWALSNLCRGKPQPHLKLLRPALP
VLARILASCTDSECLQDAGWALSYLCDGDAKRIDAVIETPGVCADLVRHL
THENAGVLTPVVRTLGNIVSGDDNHTQAVIDAGALLYMPSLLKNSKKNIR
KEIMWLLSNIAAGNREQVHALAMTKGLISMVLMQMATAEWEVVKEAIWVV
ANFATGGNAQVV* back to topmRNA from alignment at scaffold_2:511368..513902- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_822 ID=mRNA_822|Name=jgi.p|Nanoce1779_2|574258|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at scaffold_2:511368..513902- (Nannochloropsis oceanica)
ACAGGAATTAAGCCACGACCGAGGCCAGGTACCCTGCCGCACGATGGACA
AGCGGAAATTTCTGTTTAAGAAGGTACGAACATTCTCCCTATCCCTTTTT
CCGGGCTACGAAGGCGGCCATTGAGGTGTGGTCGCACACCATGTCCGCTT
GGCTGCTGTCCAACTCCCCTCAAATCCCTTACATGTCATGCTCTTGAAAA
GCCGCCTGCTCGTAGTGATGCGCTCGCCGATGTGTTTACTCGTGCGCTCG
TCGCACCACCCCACCCTGTAGTTGACTTTACGTCACTCTTCTCGCCAACG
ACTCCACGTCCTTATTCCCTCCACCCTACCAAACTACAGGCCATAGATGG
AGACTCCTGCCGTCGCCGCCGCGAGGAGCAGCAAGTGCAAATCCGCAAGC
AGAAGCGTGAAGAGTCCTTGTCGCAACGCCGGCGCATGGACACCACGTCT
GCTCATACACCAGCCGCCGCGGGCTCCTTCGGGCCTTACGTCGGCATAGG
CGTTGCGGGGGCGGGTGCTAACGGCGTACCCCCCTCACTGCAGGACTTGC
CGATGTACGCCCTCGACATGCGCTCGGGGGACGCCGCCCGTGAACTGGAA
GCGACACGGGCAGTGCGCAAACTCTTGTCAGTCCAACGTAACCCGCCCGT
GGAGCAAATTCTGGCCCACGGCTTTGTCCCCATGCTCGTCGGGCAATTAA
CCCGAGAAAACGCCTCTTCCATCCTCCTCTTTGAGGCCTCGTGGGCACTT
ACAAATGTCGGCTCTACTAATTATACACGTGCCTTGGTCGACGCCGGAGC
CATCCCACCTTTAACGCGCCTACTCCTCCACCCTTGCCCCGATGTCCGCG
AGCAATGCGCATGGGCTATGGGGAACATCAGTGGCGATTGTCCCGAGCTA
AGGGACCACGTCCTTACCCACGGAGCCCTTCCTCCCCTTCTGCAGAATCT
CCTCTCTCCAGCCTGTCTCTCCATGTCGCGTAACTGTACCTGGGCGCTGT
CGAACTTGTGCCGCGGGAAGCCTCAACCCCACCTGAAACTCCTCCGTCCC
GCCCTGCCTGTCCTAGCCCGGATCCTCGCCTCGTGCACGGATTCCGAGTG
TCTGCAGGACGCCGGGTGGGCCTTATCCTATCTCTGTGACGGCGACGCGA
AGAGGATCGACGCGGTGATTGAGACGCCGGGGGTATGTGCGGATTTGGTG
CGGCACTTGACGCATGAGAATGCTGGTGTGCTCACGCCCGTAGTTAGGAC
GCTCGGGAACATCGTCTCGGGTGACGATAACCATACACAAGGTCAGACTT
TCCTCCCTCTCTTCCCGTCCCTTGTTCATTCCCTCCCTCCTTTCCCCCCT
TGTAAGCTATGTGTGTTTATGTTGGTGGGTGTGCGGGTATGGCGAAGCAC
TTGGATTGTTGAATTTGAGAGCATGTGCCCGCATCCGGACGTTGTCTCAG
GGGATGATCATCACACGCAACGGAGGGCGGGCGTGAGGGAGGACGGAACG
TTTACATGCAACTTATTTGCGGCTTGTCTCATCCCTCATTCATTTCTCTC
CCTCCTTCCTGTTCGCAGCGGTTATCGATGCCGGAGCCCTCCTCTACATG
CCCTCCCTCCTCAAGAACAGCAAAAAGAACATCCGAAAAGAGATCATGTG
GCTCCTCAGGTACGGCCATCCCTCCCTTTCTCTCCTCTTCCCTTCCTCTC
TCTCTCCCTCCTCTCCCTCCTATCACTCAAACCACTCACTGCCTTTCCTC
CCTCTTTCTTTCCCTGCCTCCCTCCCTCCCTCCCTCCTCCGTCCGTCCCC
AGTAATATCGCGGCTGGGAACAGGGAGCAAGTGCATGCGCTGGCTATGAC
AAAAGGCCTTATCTCTATGGTGCTCATGCAGATGGCCACGGCCGAGTGGG
AGGTTGTAAAGGAGGCGATCTGGGTCGTGGCGAACTTCGCGACGGGGGGG
AATGCACAGGTGGTTTAATTTAATTTATATATATAAATCTATATACACGC
ACTCATCACATATATATGTATATATACATATGTCTTAATTTATCATTTTG
ATGGTTTGATCAATGTTTTTTATTGTTGTGATGATGATGATGATGATGAT
GATGATGATGATGACGATGATGTGCGATTATGGTCTGTTCTTCACTTAAT
TTCGATTTTCAATTTTAACACTGTCCTGCGTTCCTCCCTCCCTCTCTCCC
TCCCTCAGCACGTGCAGCTCCTGGTGGAGCTAGGCGCCCTGAAGACCCTC
TGTGACCTTCTAGAAGCCGGCGACTCCAAGGTGGTGGACATTACCCTCGA
CGCCGTGGAGGCAATCTTGAAGCAAGGCTCTACTGCATCTGCTGCTGCCA
GTGCTGCTGCTGCAGGCGCTGTCGGTGGGGGAGGGTACTTGCAGTTGTTT
TACGAAGCGGACGGACCAGAGAGGCTGGCGAAGCTGCAGGAGCATGCGAG
TGACAAGATTTATCACAGGGCAGTGCGCATGATTGAGCAGTATGTAGGGT
TGGAAGAGGAGGAGGAGGAGGAGGGGGGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_2:511368..513902- >mRNA_822 ID=mRNA_822|Name=jgi.p|Nanoce1779_2|574258|organism=Nannochloropsis oceanica|type=CDS|length=4956bp|location=Sequence derived from alignment at scaffold_2:511368..513902- (Nannochloropsis oceanica)
TAATATCGCGGCTGGGAACAGGGAGCAAGTGCATGCGCTGGCTATGACAA
AAGGCCTTATCTCTATGGTGCTCATGCAGATGGCCACGGCCGAGTGGGAG
GTTGTAAAGGAGGCGATCTGGGTCGTGGCGAACTTCGCGACGGGGGGGAA
TGCACAGGTGGTTTAACGGTTATCGATGCCGGAGCCCTCCTCTACATGCC
CTCCCTCCTCAAGAACAGCAAAAAGAACATCCGAAAAGAGATCATGTGGC
TCCTCAGGCCATAGATGGAGACTCCTGCCGTCGCCGCCGCGAGGAGCAGC
AAGTGCAAATCCGCAAGCAGAAGCGTGAAGAGTCCTTGTCGCAACGCCGG
CGCATGGACACCACGTCTGCTCATACACCAGCCGCCGCGGGCTCCTTCGG
GCCTTACGTCGGCATAGGCGTTGCGGGGGCGGGTGCTAACGGCGTACCCC
CCTCACTGCAGGACTTGCCGATGTACGCCCTCGACATGCGCTCGGGGGAC
GCCGCCCGTGAACTGGAAGCGACACGGGCAGTGCGCAAACTCTTGTCAGT
CCAACGTAACCCGCCCGTGGAGCAAATTCTGGCCCACGGCTTTGTCCCCA
TGCTCGTCGGGCAATTAACCCGAGAAAACGCCTCTTCCATCCTCCTCTTT
GAGGCCTCGTGGGCACTTACAAATGTCGGCTCTACTAATTATACACGTGC
CTTGGTCGACGCCGGAGCCATCCCACCTTTAACGCGCCTACTCCTCCACC
CTTGCCCCGATGTCCGCGAGCAATGCGCATGGGCTATGGGGAACATCAGT
GGCGATTGTCCCGAGCTAAGGGACCACGTCCTTACCCACGGAGCCCTTCC
TCCCCTTCTGCAGAATCTCCTCTCTCCAGCCTGTCTCTCCATGTCGCGTA
ACTGTACCTGGGCGCTGTCGAACTTGTGCCGCGGGAAGCCTCAACCCCAC
CTGAAACTCCTCCGTCCCGCCCTGCCTGTCCTAGCCCGGATCCTCGCCTC
GTGCACGGATTCCGAGTGTCTGCAGGACGCCGGGTGGGCCTTATCCTATC
TCTGTGACGGCGACGCGAAGAGGATCGACGCGGTGATTGAGACGCCGGGG
GTATGTGCGGATTTGGTGCGGCACTTGACGCATGAGAATGCTGGTGTGCT
CACGCCCGTAGTTAGGACGCTCGGGAACATCGTCTCGGGTGACGATAACC
ATACACAAGATGGACAAGCGGAAATTTCTGTTTAAGAAGTAATATCGCGG
CTGGGAACAGGGAGCAAGTGCATGCGCTGGCTATGACAAAAGGCCTTATC
TCTATGGTGCTCATGCAGATGGCCACGGCCGAGTGGGAGGTTGTAAAGGA
GGCGATCTGGGTCGTGGCGAACTTCGCGACGGGGGGGAATGCACAGGTGG
TTTAACGGTTATCGATGCCGGAGCCCTCCTCTACATGCCCTCCCTCCTCA
AGAACAGCAAAAAGAACATCCGAAAAGAGATCATGTGGCTCCTCAGGCCA
TAGATGGAGACTCCTGCCGTCGCCGCCGCGAGGAGCAGCAAGTGCAAATC
CGCAAGCAGAAGCGTGAAGAGTCCTTGTCGCAACGCCGGCGCATGGACAC
CACGTCTGCTCATACACCAGCCGCCGCGGGCTCCTTCGGGCCTTACGTCG
GCATAGGCGTTGCGGGGGCGGGTGCTAACGGCGTACCCCCCTCACTGCAG
GACTTGCCGATGTACGCCCTCGACATGCGCTCGGGGGACGCCGCCCGTGA
ACTGGAAGCGACACGGGCAGTGCGCAAACTCTTGTCAGTCCAACGTAACC
CGCCCGTGGAGCAAATTCTGGCCCACGGCTTTGTCCCCATGCTCGTCGGG
CAATTAACCCGAGAAAACGCCTCTTCCATCCTCCTCTTTGAGGCCTCGTG
GGCACTTACAAATGTCGGCTCTACTAATTATACACGTGCCTTGGTCGACG
CCGGAGCCATCCCACCTTTAACGCGCCTACTCCTCCACCCTTGCCCCGAT
GTCCGCGAGCAATGCGCATGGGCTATGGGGAACATCAGTGGCGATTGTCC
CGAGCTAAGGGACCACGTCCTTACCCACGGAGCCCTTCCTCCCCTTCTGC
AGAATCTCCTCTCTCCAGCCTGTCTCTCCATGTCGCGTAACTGTACCTGG
GCGCTGTCGAACTTGTGCCGCGGGAAGCCTCAACCCCACCTGAAACTCCT
CCGTCCCGCCCTGCCTGTCCTAGCCCGGATCCTCGCCTCGTGCACGGATT
CCGAGTGTCTGCAGGACGCCGGGTGGGCCTTATCCTATCTCTGTGACGGC
GACGCGAAGAGGATCGACGCGGTGATTGAGACGCCGGGGGTATGTGCGGA
TTTGGTGCGGCACTTGACGCATGAGAATGCTGGTGTGCTCACGCCCGTAG
TTAGGACGCTCGGGAACATCGTCTCGGGTGACGATAACCATACACAAGAT
GGACAAGCGGAAATTTCTGTTTAAGAAGTAATATCGCGGCTGGGAACAGG
GAGCAAGTGCATGCGCTGGCTATGACAAAAGGCCTTATCTCTATGGTGCT
CATGCAGATGGCCACGGCCGAGTGGGAGGTTGTAAAGGAGGCGATCTGGG
TCGTGGCGAACTTCGCGACGGGGGGGAATGCACAGGTGGTTTAACGGTTA
TCGATGCCGGAGCCCTCCTCTACATGCCCTCCCTCCTCAAGAACAGCAAA
AAGAACATCCGAAAAGAGATCATGTGGCTCCTCAGGCCATAGATGGAGAC
TCCTGCCGTCGCCGCCGCGAGGAGCAGCAAGTGCAAATCCGCAAGCAGAA
GCGTGAAGAGTCCTTGTCGCAACGCCGGCGCATGGACACCACGTCTGCTC
ATACACCAGCCGCCGCGGGCTCCTTCGGGCCTTACGTCGGCATAGGCGTT
GCGGGGGCGGGTGCTAACGGCGTACCCCCCTCACTGCAGGACTTGCCGAT
GTACGCCCTCGACATGCGCTCGGGGGACGCCGCCCGTGAACTGGAAGCGA
CACGGGCAGTGCGCAAACTCTTGTCAGTCCAACGTAACCCGCCCGTGGAG
CAAATTCTGGCCCACGGCTTTGTCCCCATGCTCGTCGGGCAATTAACCCG
AGAAAACGCCTCTTCCATCCTCCTCTTTGAGGCCTCGTGGGCACTTACAA
ATGTCGGCTCTACTAATTATACACGTGCCTTGGTCGACGCCGGAGCCATC
CCACCTTTAACGCGCCTACTCCTCCACCCTTGCCCCGATGTCCGCGAGCA
ATGCGCATGGGCTATGGGGAACATCAGTGGCGATTGTCCCGAGCTAAGGG
ACCACGTCCTTACCCACGGAGCCCTTCCTCCCCTTCTGCAGAATCTCCTC
TCTCCAGCCTGTCTCTCCATGTCGCGTAACTGTACCTGGGCGCTGTCGAA
CTTGTGCCGCGGGAAGCCTCAACCCCACCTGAAACTCCTCCGTCCCGCCC
TGCCTGTCCTAGCCCGGATCCTCGCCTCGTGCACGGATTCCGAGTGTCTG
CAGGACGCCGGGTGGGCCTTATCCTATCTCTGTGACGGCGACGCGAAGAG
GATCGACGCGGTGATTGAGACGCCGGGGGTATGTGCGGATTTGGTGCGGC
ACTTGACGCATGAGAATGCTGGTGTGCTCACGCCCGTAGTTAGGACGCTC
GGGAACATCGTCTCGGGTGACGATAACCATACACAAGATGGACAAGCGGA
AATTTCTGTTTAAGAAGTAATATCGCGGCTGGGAACAGGGAGCAAGTGCA
TGCGCTGGCTATGACAAAAGGCCTTATCTCTATGGTGCTCATGCAGATGG
CCACGGCCGAGTGGGAGGTTGTAAAGGAGGCGATCTGGGTCGTGGCGAAC
TTCGCGACGGGGGGGAATGCACAGGTGGTTTAACGGTTATCGATGCCGGA
GCCCTCCTCTACATGCCCTCCCTCCTCAAGAACAGCAAAAAGAACATCCG
AAAAGAGATCATGTGGCTCCTCAGGCCATAGATGGAGACTCCTGCCGTCG
CCGCCGCGAGGAGCAGCAAGTGCAAATCCGCAAGCAGAAGCGTGAAGAGT
CCTTGTCGCAACGCCGGCGCATGGACACCACGTCTGCTCATACACCAGCC
GCCGCGGGCTCCTTCGGGCCTTACGTCGGCATAGGCGTTGCGGGGGCGGG
TGCTAACGGCGTACCCCCCTCACTGCAGGACTTGCCGATGTACGCCCTCG
ACATGCGCTCGGGGGACGCCGCCCGTGAACTGGAAGCGACACGGGCAGTG
CGCAAACTCTTGTCAGTCCAACGTAACCCGCCCGTGGAGCAAATTCTGGC
CCACGGCTTTGTCCCCATGCTCGTCGGGCAATTAACCCGAGAAAACGCCT
CTTCCATCCTCCTCTTTGAGGCCTCGTGGGCACTTACAAATGTCGGCTCT
ACTAATTATACACGTGCCTTGGTCGACGCCGGAGCCATCCCACCTTTAAC
GCGCCTACTCCTCCACCCTTGCCCCGATGTCCGCGAGCAATGCGCATGGG
CTATGGGGAACATCAGTGGCGATTGTCCCGAGCTAAGGGACCACGTCCTT
ACCCACGGAGCCCTTCCTCCCCTTCTGCAGAATCTCCTCTCTCCAGCCTG
TCTCTCCATGTCGCGTAACTGTACCTGGGCGCTGTCGAACTTGTGCCGCG
GGAAGCCTCAACCCCACCTGAAACTCCTCCGTCCCGCCCTGCCTGTCCTA
GCCCGGATCCTCGCCTCGTGCACGGATTCCGAGTGTCTGCAGGACGCCGG
GTGGGCCTTATCCTATCTCTGTGACGGCGACGCGAAGAGGATCGACGCGG
TGATTGAGACGCCGGGGGTATGTGCGGATTTGGTGCGGCACTTGACGCAT
GAGAATGCTGGTGTGCTCACGCCCGTAGTTAGGACGCTCGGGAACATCGT
CTCGGGTGACGATAACCATACACAAGATGGACAAGCGGAAATTTCTGTTT
AAGAAG back to top
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