jgi.p|Nanoce1779_2|601155, mRNA_8217 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601155
Unique NamemRNA_8217
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length623
Alignment locationscaffold_23:81131..81753 -

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Properties
Property NameValue
TranscriptId601241
TrackFilteredModels2
ProteinId601155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:81131..81753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601155gene_8217Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601155mRNA_8217-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8217CDS_8217Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Nanoce1779_2|601155|organism=Nannochloropsis oceanica|type=mRNA|length=623bp
CCCTCTTCATCTTCCTCGTCCGCCTCCTTCCAGACCTTGTGGCGCCACTT
TCCCATCGTCCTATTTCGTCTCTTTATTTTCATGCTTTTTCCCAGTGCGT
GTCCATTGTCTTCCACCGCCGCCTCTCGCCCGTCAACCTCCTCCATGCGA
CTGCCGCTATCCATCCCTCTTCCTTCTTCCTCCTGCTCAACTAGCTGTCT
CATCCCCCCTTCTTCTCTTCCAGCCTCGTCAATAGAAGGAAGGGAGTGTA
TCCGAGCCACAAACTGGCCGGGCCCAAAGCCCTTTCCTCCCAACGGCGAA
TCCACAAACAGCATACTTGTGAAGAAGAAGACTACCGTCGCGGTGACCAA
GGCCGTCAAAACCAAGTGCACCGTTGTAAAGCGCCGCCCTCCTCCAATCG
GTGCTGCTGCACTCCCTCTCCTTCCAAGCACTCCTAATCCTGTGAGTGGC
TGCTTTCTGTATTCTCTTCGCTTGCTTCTCCTACCGTCATCGCCACTCTC
GCCACCGCTGGCCGCAGCGCCGGTTGAATGCACGTCAGGCTGCTGTTGCC
GGTGCATGCCCTGACAGAAGTATAACGAAGGTCGCTTCAGTCAACGTGTC
CTACGGTTACGCTATTTGACTGT
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protein sequence of jgi.p|Nanoce1779_2|601155

>mRNA_8217-protein ID=mRNA_8217-protein|Name=jgi.p|Nanoce1779_2|601155|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MLFPSACPLSSTAASRPSTSSMRLPLSIPLPSSSCSTSCLIPPSSLPASS
IEGRECIRATNWPGPKPFPPNGESTNSILVKKKTTVAVTKAVKTKCTVVK
RRPPPIGAAALPLLPSTPNPVSGCFLYSLRLLLLPSSPLSPPLAAAPVEC
TSGCCCRCMP*
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mRNA from alignment at scaffold_23:81131..81753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Nanoce1779_2|601155|organism=Nannochloropsis oceanica|type=mRNA|length=623bp|location=Sequence derived from alignment at scaffold_23:81131..81753- (Nannochloropsis oceanica)
CCCTCTTCATCTTCCTCGTCCGCCTCCTTCCAGACCTTGTGGCGCCACTT
TCCCATCGTCCTATTTCGTCTCTTTATTTTCATGCTTTTTCCCAGTGCGT
GTCCATTGTCTTCCACCGCCGCCTCTCGCCCGTCAACCTCCTCCATGCGA
CTGCCGCTATCCATCCCTCTTCCTTCTTCCTCCTGCTCAACTAGCTGTCT
CATCCCCCCTTCTTCTCTTCCAGCCTCGTCAATAGAAGGAAGGGAGTGTA
TCCGAGCCACAAACTGGCCGGGCCCAAAGCCCTTTCCTCCCAACGGCGAA
TCCACAAACAGCATACTTGTGAAGAAGAAGACTACCGTCGCGGTGACCAA
GGCCGTCAAAACCAAGTGCACCGTTGTAAAGCGCCGCCCTCCTCCAATCG
GTGCTGCTGCACTCCCTCTCCTTCCAAGCACTCCTAATCCTGTGAGTGGC
TGCTTTCTGTATTCTCTTCGCTTGCTTCTCCTACCGTCATCGCCACTCTC
GCCACCGCTGGCCGCAGCGCCGGTTGAATGCACGTCAGGCTGCTGTTGCC
GGTGCATGCCCTGACAGAAGTATAACGAAGGTCGCTTCAGTCAACGTGTC
CTACGGTTACGCTATTTGACTGT
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Coding sequence (CDS) from alignment at scaffold_23:81131..81753-

>mRNA_8217 ID=mRNA_8217|Name=jgi.p|Nanoce1779_2|601155|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_23:81131..81753- (Nannochloropsis oceanica)
ATGCTTTTTCCCAGTGCGTGTCCATTGTCTTCCACCGCCGCCTCTCGCCC
GTCAACCTCCTCCATGCGACTGCCGCTATCCATCCCTCTTCCTTCTTCCT
CCTGCTCAACTAGCTGTCTCATCCCCCCTTCTTCTCTTCCAGCCTCGTCA
ATAGAAGGAAGGGAGTGTATCCGAGCCACAAACTGGCCGGGCCCAAAGCC
CTTTCCTCCCAACGGCGAATCCACAAACAGCATACTTGTGAAGAAGAAGA
CTACCGTCGCGGTGACCAAGGCCGTCAAAACCAAGTGCACCGTTGTAAAG
CGCCGCCCTCCTCCAATCGGTGCTGCTGCACTCCCTCTCCTTCCAAGCAC
TCCTAATCCTGTGAGTGGCTGCTTTCTGTATTCTCTTCGCTTGCTTCTCC
TACCGTCATCGCCACTCTCGCCACCGCTGGCCGCAGCGCCGGTTGAATGC
ACGTCAGGCTGCTGTTGCCGGTGCATGCCCTGA
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Synonyms
Publications