jgi.p|Nanoce1779_2|632686, mRNA_8216 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632686
Unique NamemRNA_8216
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length664
Alignment locationscaffold_23:77681..78624 -

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Properties
Property NameValue
TranscriptId632772
TrackFilteredModels2
ProteinId632686
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:77681..78624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632686gene_8216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632686mRNA_8216-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8216CDS_8216Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8216 ID=mRNA_8216|Name=jgi.p|Nanoce1779_2|632686|organism=Nannochloropsis oceanica|type=mRNA|length=664bp
ATGTTGAAGAGAGAGGGAGGGAAGGAGGGTTGGAAGGAAGGAGGGATGCA
TTTGGAGATGCAAGGAGGAAAAGTGGGCGGGAAGACCGAAGAGGAGGGAG
AGGAGAAGGGAGGGAGAGCGATGTTGCTCGAAACAGCAGCAGTGGCAGCA
AAGGAAGCAGGAAAGGGAGGGAGGGAGGGAGGGAAGGCGAGCGTGTGGTT
GGGGGAGGGTTTGGTCAAGACTTCAGCGGAGATGGTAGGAGAGCAGGCGC
TACATCACCCCTTGTGGGACCGTTATTACATGGCGGAGGTGGAGGGAGGG
AGGAAGGGAGGGAGGGAGGGAGGGGTGAGGCTGGTGAATCCCGTGCCATT
CTATTCTAATCCGTATTCGAAGGTGGTGCAGATGGAGAGACCTGTGCCGC
CTAAGGAGTGCCGGGGGGGGATCTTGGCCGACGACATGGGCATGGGCAAG
ACCATCATGGTCCTCGCCCTCCTCCTCACAGCCAAGCACCATCACCTCCA
CCCCCCTCCTCCTCCCTACTCCGCCGCCTCCCTCCTCCCACTCCCCTCGT
CCCTCCCTCCCACACTGGTCGTCGTTCCCCTCTCCGTCCTTGCCCAGTGG
CACGACGAGATAAAAAAATTCTCAGCCCCCGGCGCCATGTGTGCTCTAAT
CTACTACGGCTCTG
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protein sequence of jgi.p|Nanoce1779_2|632686

>mRNA_8216-protein ID=mRNA_8216-protein|Name=jgi.p|Nanoce1779_2|632686|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLKREGGKEGWKEGGMHLEMQGGKVGGKTEEEGEEKGGRAMLLETAAVAA
KEAGKGGREGGKASVWLGEGLVKTSAEMVGEQALHHPLWDRYYMAEVEGG
RKGGREGGVRLVNPVPFYSNPYSKVVQMERPVPPKECRGGILADDMGMGK
TIMVLALLLTAKHHHLHPPPPPYSAASLLPLPSSLPPTLVVVPLSVLAQW
HDEIKKFSAPGAMCALIYYGS
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mRNA from alignment at scaffold_23:77681..78624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8216 ID=mRNA_8216|Name=jgi.p|Nanoce1779_2|632686|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_23:77681..78624- (Nannochloropsis oceanica)
ATGTTGAAGAGAGAGGGAGGGAAGGAGGGTTGGAAGGAAGGAGGGATGCA
TTTGGAGATGCAAGGAGGAAAAGTGGGCGGGAAGACCGAAGAGGAGGGAG
AGGAGAAGGGAGGGAGAGCGATGTTGCTCGAAACAGCAGCAGTGGCAGCA
AAGGAAGCAGGAAAGGGAGGGAGGGAGGGAGGGAAGGCGAGCGTGTGGTT
GGGGGAGGGTTTGGTCAAGACTTCAGCGGAGATGGTAGGAGAGCAGGCGC
TACATCACCCCTTGTGGGACCGTTATTACATGGCGGAGGTGGAGGGAGGG
AGGAAGGGAGGGAGGGAGGGAGGGGTGAGGCTGGTGAATCCCGTGCCATT
CTATTCTAATCCGTATTCGAAGGTGGTGCAGATGGAGAGACCTGTGCCGC
CTAAGGAGTGCCGGGGGGGGATCTTGGCCGACGACATGGTAAGAGGAAGG
AGGGAGGGAGGGAGGGAGGGAGGGCAAAGTGAGGTTAAGGGGCCTAGGTA
GGTAGGGCGGGAAATAAAGTCGCACTGCAATGACATGTGCAGTGCAGTCG
CCATCGCCGGAGCCGTTACCGAATGCGGTTGGATTGGGCTACCCAAGGGC
TATGTATTTCATGTCTGAATAATATATAATAAAACAACAAAAGTAATAAT
CTTATTTATTTTAAATTTACTTGATTGTTGTATAATAAATATGCACCTCC
TACTTGAATCAAACACAGGGCATGGGCAAGACCATCATGGTCCTCGCCCT
CCTCCTCACAGCCAAGCACCATCACCTCCACCCCCCTCCTCCTCCCTACT
CCGCCGCCTCCCTCCTCCCACTCCCCTCGTCCCTCCCTCCCACACTGGTC
GTCGTTCCCCTCTCCGTCCTTGCCCAGTGGCACGACGAGATAAAAAAATT
CTCAGCCCCCGGCGCCATGTGTGCTCTAATCTACTACGGCTCTG
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Coding sequence (CDS) from alignment at scaffold_23:77681..78624-

>mRNA_8216 ID=mRNA_8216|Name=jgi.p|Nanoce1779_2|632686|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_23:77681..78624- (Nannochloropsis oceanica)
GGCATGGGCAAGACCATCATGGTCCTCGCCCTCCTCCTCACAGCCAAGCA
CCATCACCTCCACCCCCCTCCTCCTCCCTACTCCGCCGCCTCCCTCCTCC
CACTCCCCTCGTCCCTCCCTCCCACACTGGTCGTCGTTCCCCTCTCCGTC
CTTGCCCAGTGGCACGACGAGATAAAAAAATTCTCAGCCCCCGGCGCCAT
GTGTGCTCTAATCTACTACGGCTCTATGTTGAAGAGAGAGGGAGGGAAGG
AGGGTTGGAAGGAAGGAGGGATGCATTTGGAGATGCAAGGAGGAAAAGTG
GGCGGGAAGACCGAAGAGGAGGGAGAGGAGAAGGGAGGGAGAGCGATGTT
GCTCGAAACAGCAGCAGTGGCAGCAAAGGAAGCAGGAAAGGGAGGGAGGG
AGGGAGGGAAGGCGAGCGTGTGGTTGGGGGAGGGTTTGGTCAAGACTTCA
GCGGAGATGGTAGGAGAGCAGGCGCTACATCACCCCTTGTGGGACCGTTA
TTACATGGCGGAGGTGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGG
TGAGGCTGGTGAATCCCGTGCCATTCTATTCTAATCCGTATTCGAAGGTG
GTGCAGATGGAGAGACCTGTGCCGCCTAAGGAGTGCCGGGGGGGGATCTT
GGCCGACGACATGGGCATGGGCAAGACCATCATGGTCCTCGCCCTCCTCC
TCACAGCCAAGCACCATCACCTCCACCCCCCTCCTCCTCCCTACTCCGCC
GCCTCCCTCCTCCCACTCCCCTCGTCCCTCCCTCCCACACTGGTCGTCGT
TCCCCTCTCCGTCCTTGCCCAGTGGCACGACGAGATAAAAAAATTCTCAG
CCCCCGGCGCCATGTGTGCTCTAATCTACTACGGCTCTATGTTGAAGAGA
GAGGGAGGGAAGGAGGGTTGGAAGGAAGGAGGGATGCATTTGGAGATGCA
AGGAGGAAAAGTGGGCGGGAAGACCGAAGAGGAGGGAGAGGAGAAGGGAG
GGAGAGCGATGTTGCTCGAAACAGCAGCAGTGGCAGCAAAGGAAGCAGGA
AAGGGAGGGAGGGAGGGAGGGAAGGCGAGCGTGTGGTTGGGGGAGGGTTT
GGTCAAGACTTCAGCGGAGATGGTAGGAGAGCAGGCGCTACATCACCCCT
TGTGGGACCGTTATTACATGGCGGAGGTGGAGGGAGGGAGGAAGGGAGGG
AGGGAGGGAGGGGTGAGGCTGGTGAATCCCGTGCCATTCTATTCTAATCC
GTATTCGAAGGTGGTGCAGATGGAGAGACCTGTGCCGCCTAAGGAGTGCC
GGGGGGGGATCTTGGCCGACGACATG
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Synonyms
Publications