jgi.p|Nanoce1779_2|601145, mRNA_8215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601145
Unique NamemRNA_8215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length660
Alignment locationscaffold_23:73949..74725 -

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Properties
Property NameValue
TranscriptId601231
TrackFilteredModels2
ProteinId601145
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:73949..74725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601145gene_8215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601145mRNA_8215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8215CDS_8215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8215 ID=mRNA_8215|Name=jgi.p|Nanoce1779_2|601145|organism=Nannochloropsis oceanica|type=mRNA|length=660bp
TTCCCCCTCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCCAAAAGGATT
CGGTGCACTGTGCAGATAAGGAAAGGAGGACGAAGCCTCCTTCCATGAAT
GTCAAAGACGAAGAAGGGAGGGAGGATGAGGACGGGAAGGAGGAACTTCC
CCTATCCCTACCACCTAAAAAAGCTGTCATTTTCTCTCAATGGACTGGCA
TGCTCGATTTGGTCTCGCGGGCTTTGGCACACAAACAAATAATCTTCGTG
CGGCTAGACGGGCGCACGAGCCAGCAGCAGCGTGGACATGTCCTGAGAGA
ATTTGCCTCAAACGATGAAGTGCGCGTAATGGTTTTGAGCTTGAGGGCAG
GAGGGGTGGGGTTGAACCTTACGAGTGCCAACGTGGTGATGCTGTTGGAT
CCGTGGTGGAATCCTGCCTTAGAAGACCAAGCTATAGACCGAGTCCACCG
CCTTGGTCAACTCCGCGATACCGTGCACATTCTCCGCTTCACTGTCAAAG
ACACGGTGGAACAACAGATGTTAGTTGTCCAGGAAAAGAAGGCAGCCGTG
GCGCGAAGTGCCTTGGCGTGCGGGGCCGGGGGGGGAGACAAGGACGGGAA
GGAGGGGCGGTTGTCACTAGATGATTTGCGGAAGTTTTTTTAAGACAAAA
TTACCTGACG
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protein sequence of jgi.p|Nanoce1779_2|601145

>mRNA_8215-protein ID=mRNA_8215-protein|Name=jgi.p|Nanoce1779_2|601145|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MNVKDEEGREDEDGKEELPLSLPPKKAVIFSQWTGMLDLVSRALAHKQII
FVRLDGRTSQQQRGHVLREFASNDEVRVMVLSLRAGGVGLNLTSANVVML
LDPWWNPALEDQAIDRVHRLGQLRDTVHILRFTVKDTVEQQMLVVQEKKA
AVARSALACGAGGGDKDGKEGRLSLDDLRKFF*
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mRNA from alignment at scaffold_23:73949..74725-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8215 ID=mRNA_8215|Name=jgi.p|Nanoce1779_2|601145|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at scaffold_23:73949..74725- (Nannochloropsis oceanica)
TTCCCCCTCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCCAAAAGGATT
CGGTGCACTGTGCAGATAAGGAAAGGAGGACGAAGCCTCCTTCCATGAAT
GTCAAAGACGAAGAAGGGAGGGAGGATGAGGACGGGAAGGAGGAACTTCC
CCTATCCCTACCACCTAAAAAAGCTGTCATTTTCTCTCAATGGACTGGCA
TGCTCGATTTGGTCTCGCGGGCTTTGGCACACAAACAAATAATCTTCGTG
CGGCTAGACGGGCGCACGAGCCAGCAGCAGCGTGGACATGTCCTGAGAGA
ATTTGCCTCAAACGATGAAGTGCGCGTAATGGTTTTGAGCTTGAGGGCAG
GAGGGGTGGGGTTGAACCTTACGAGTGCCAACGTGGTGATGCTGTTGGAT
CCGTGGTGGTGGGTTTCAAGACAGGGGGGGAGCGAGGGGAGGAAGGGAAG
AAAGGAGGAAAGGAACAACTTCAAGCGTACTGACTCGCCAATGTTTCGAC
CATCCCTCCCATGTTTTCCCCACAGGAATCCTGCCTTAGAAGACCAAGCT
ATAGACCGAGTCCACCGCCTTGGTCAACTCCGCGATACCGTGCACATTCT
CCGCTTCACTGTCAAAGACACGGTGGAACAACAGATGTTAGTTGTCCAGG
AAAAGAAGGCAGCCGTGGCGCGAAGTGCCTTGGCGTGCGGGGCCGGGGGG
GGAGACAAGGACGGGAAGGAGGGGCGGTTGTCACTAGATGATTTGCGGAA
GTTTTTTTAAGACAAAATTACCTGACG
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Coding sequence (CDS) from alignment at scaffold_23:73949..74725-

>mRNA_8215 ID=mRNA_8215|Name=jgi.p|Nanoce1779_2|601145|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_23:73949..74725- (Nannochloropsis oceanica)
GAATCCTGCCTTAGAAGACCAAGCTATAGACCGAGTCCACCGCCTTGGTC
AACTCCGCGATACCGTGCACATTCTCCGCTTCACTGTCAAAGACACGGTG
GAACAACAGATGTTAGTTGTCCAGGAAAAGAAGGCAGCCGTGGCGCGAAG
TGCCTTGGCGTGCGGGGCCGGGGGGGGAGACAAGGACGGGAAGGAGGGGC
GGTTGTCACTAGATGATTTGCGGAAGTTTTTTTAAATGAATGTCAAAGAC
GAAGAAGGGAGGGAGGATGAGGACGGGAAGGAGGAACTTCCCCTATCCCT
ACCACCTAAAAAAGCTGTCATTTTCTCTCAATGGACTGGCATGCTCGATT
TGGTCTCGCGGGCTTTGGCACACAAACAAATAATCTTCGTGCGGCTAGAC
GGGCGCACGAGCCAGCAGCAGCGTGGACATGTCCTGAGAGAATTTGCCTC
AAACGATGAAGTGCGCGTAATGGTTTTGAGCTTGAGGGCAGGAGGGGTGG
GGTTGAACCTTACGAGTGCCAACGTGGTGATGCTGTTGGATCCGTGGTGG
AATCCTGCCTTAGAAGACCAAGCTATAGACCGAGTCCACCGCCTTGGTCA
ACTCCGCGATACCGTGCACATTCTCCGCTTCACTGTCAAAGACACGGTGG
AACAACAGATGTTAGTTGTCCAGGAAAAGAAGGCAGCCGTGGCGCGAAGT
GCCTTGGCGTGCGGGGCCGGGGGGGGAGACAAGGACGGGAAGGAGGGGCG
GTTGTCACTAGATGATTTGCGGAAGTTTTTTTAAATGAATGTCAAAGACG
AAGAAGGGAGGGAGGATGAGGACGGGAAGGAGGAACTTCCCCTATCCCTA
CCACCTAAAAAAGCTGTCATTTTCTCTCAATGGACTGGCATGCTCGATTT
GGTCTCGCGGGCTTTGGCACACAAACAAATAATCTTCGTGCGGCTAGACG
GGCGCACGAGCCAGCAGCAGCGTGGACATGTCCTGAGAGAATTTGCCTCA
AACGATGAAGTGCGCGTAATGGTTTTGAGCTTGAGGGCAGGAGGGGTGGG
GTTGAACCTTACGAGTGCCAACGTGGTGATGCTGTTGGATCCGTGGTG
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Synonyms
Publications