jgi.p|Nanoce1779_2|186295, mRNA_8212 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|186295
Unique NamemRNA_8212
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length620
Alignment locationscaffold_23:64754..65786 +

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Properties
Property NameValue
TranscriptId186381
TrackFilteredModels2
ProteinId186295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:64754..65786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186295gene_8212Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186295mRNA_8212-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8212CDS_8212Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8212 ID=mRNA_8212|Name=jgi.p|Nanoce1779_2|186295|organism=Nannochloropsis oceanica|type=mRNA|length=620bp
GACTCACACATACACACACCATACACCTACAAGCACTGCGTCGTACCCTG
TCCAAAGGGTTCCAGGTAGATTTTCCAAGCAGGCGCAATTTAATCTCTAG
AGGCAAAGCAACCTACCACGGATCGCAGCCATATCACCCTCATCGTCGTC
CATATTTGCTGCCCCTTCGCACCGACTCATTCCTGCGTCCCCCTCTACAC
AAGCCTTCAAGCCAGCCGAAGCACAAGCCATGGGAGTACGGCCCCTCTTT
CGCGTCGCCAAGGCCCAGTCCACCCACCTCTTTCGTTTCATCACCCAAGT
CGACGTCAGCCTCAACCCTTGGTCAGATCATCGCCTCTCAAGCACGCGTG
AATTCTGGCGCGCAATTTCCGTACCACGCTTTCGAAAAGCCAATCCCAAG
TGTGTGATCAACGTGGAGACACACAACAGGAAGGCGGCCCCAACAGTAGC
GATCAAGTACCTTGATGGGAGCACTCAGGTCTTCGAACCAGAGCACTTGG
ACGTGGTGGAGATGATGAGCGACATGCACCAACACGCCCACATCATTAAT
GCGAAGTACGAAGACGAAGGAAAGGAGCTCGATGCTTAAAGAAAGAAACA
ATTTTGCTGGGTCCAGCTTA
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protein sequence of jgi.p|Nanoce1779_2|186295

>mRNA_8212-protein ID=mRNA_8212-protein|Name=jgi.p|Nanoce1779_2|186295|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MGVRPLFRVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPR
FRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMH
QHAHIINAKYEDEGKELDA*
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mRNA from alignment at scaffold_23:64754..65786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8212 ID=mRNA_8212|Name=jgi.p|Nanoce1779_2|186295|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_23:64754..65786+ (Nannochloropsis oceanica)
GACTCACACATACACACACCATACACCTACAAGCACTGCGTCGTACCCTG
TCCAAAGGGTTCCAGGTAGATTTTCCAAGCAGGCGCAATTTAATCTCTAG
AGGCAAAGCAACCTACCACGGATCGCAGCCATATCACCCTCATCGTCGTC
CATATTTGCTGCCCCTTCGCACCGACTCATTCCTGCGTCCCCCTCTACAC
AAGCCTTCAAGCCAGCCGAAGCACAAGCCATGGGAGTACGGCCCCTCTTT
CGCGTCGCCAAGGCCCAGTCCACCCACCTCTTTCGTTTCATCACCCAAGT
CGACGTCAGGTGTGAATCAGAACCCTTCCCCATCCGTCTTGTTTTTCCTT
CTTCTCTCCGCTGCAGTGTGTCTCTATGTGTGTCCCTTGCCTCTGGCCCA
TCCTATGGCTCCTTGCGTCGGGCTCTTACTTGCTCCCCGTGTTGTCATGT
TGAGAGAATCCTCCCCACTGTGCTCACCTCTCCCTCCCTCCATCCTTCCC
CGCAGCCTCAACCCTTGGTCAGATCATCGCCTCTCAAGCACGCGTGAATT
CTGGCGCGCAATTTCCGTACCACGCTTTCGAAAAGCCAATCCCAAGTGTG
TGATCAACGTGGAGACACACAACAGGAAGGCGGCCCCAACAGTAGCGATC
AAGTGAGGAAGGAGGGAAAAAGGGAGGGAGGGAAAATGGGAACATGGGAA
AAATCAAATTGGACAGCAGGAAGGGCTTTAGGATTTTAATAATTTGGTGA
CATGCACCGGAAGTGTGATTTTTTAATACTTGGATGCGTGCGTGGAACCA
CCTCTATCTCCAATCCCTTTTAACTCACACCCCTACCTCTCTCCCTCCCT
CCCCACCCTCCCCCCTCAGGTACCTTGATGGGAGCACTCAGGTCTTCGAA
CCAGAGCACTTGGACGTGGTGGAGATGATGAGCGACATGCACCAACACGC
CCACATCATTAATGCGAAGTACGAAGACGAAGGAAAGGAGCTCGATGCTT
AAAGAAAGAAACAATTTTGCTGGGTCCAGCTTA
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Coding sequence (CDS) from alignment at scaffold_23:64754..65786+

>mRNA_8212 ID=mRNA_8212|Name=jgi.p|Nanoce1779_2|186295|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_23:64754..65786+ (Nannochloropsis oceanica)
ATGGGAGTACGGCCCCTCTTTCGCGTCGCCAAGGCCCAGTCCACCCACCT
CTTTCGTTTCATCACCCAAGTCGACGTCAGCCTCAACCCTTGGTCAGATC
ATCGCCTCTCAAGCACGCGTGAATTCTGGCGCGCAATTTCCGTACCACGC
TTTCGAAAAGCCAATCCCAAGTGTGTGATCAACGTGGAGACACACAACAG
GAAGGCGGCCCCAACAGTAGCGATCAAGTACCTTGATGGGAGCACTCAGG
TCTTCGAACCAGAGCACTTGGACGTGGTGGAGATGATGAGCGACATGCAC
CAACACGCCCACATCATTAATGCGAAGTACGAAGACGAAGGAAAGGAGCT
CGATGCTTAAATGGGAGTACGGCCCCTCTTTCGCGTCGCCAAGGCCCAGT
CCACCCACCTCTTTCGTTTCATCACCCAAGTCGACGTCAGCCTCAACCCT
TGGTCAGATCATCGCCTCTCAAGCACGCGTGAATTCTGGCGCGCAATTTC
CGTACCACGCTTTCGAAAAGCCAATCCCAAGTGTGTGATCAACGTGGAGA
CACACAACAGGAAGGCGGCCCCAACAGTAGCGATCAAGTACCTTGATGGG
AGCACTCAGGTCTTCGAACCAGAGCACTTGGACGTGGTGGAGATGATGAG
CGACATGCACCAACACGCCCACATCATTAATGCGAAGTACGAAGACGAAG
GAAAGGAGCTCGATGCTTAAATGGGAGTACGGCCCCTCTTTCGCGTCGCC
AAGGCCCAGTCCACCCACCTCTTTCGTTTCATCACCCAAGTCGACGTCAG
CCTCAACCCTTGGTCAGATCATCGCCTCTCAAGCACGCGTGAATTCTGGC
GCGCAATTTCCGTACCACGCTTTCGAAAAGCCAATCCCAAGTGTGTGATC
AACGTGGAGACACACAACAGGAAGGCGGCCCCAACAGTAGCGATCAAGTA
CCTTGATGGGAGCACTCAGGTCTTCGAACCAGAGCACTTGGACGTGGTGG
AGATGATGAGCGACATGCACCAACACGCCCACATCATTAATGCGAAGTAC
GAAGACGAAGGAAAGGAGCTCGATGCTTAA
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Synonyms
Publications