jgi.p|Nanoce1779_2|655195, mRNA_8210 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655195
Unique Name	mRNA_8210
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2045
Alignment location	scaffold_23:55722..57766 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	655281
Track	FilteredModels2
ProteinId	655195

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:55722..57766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655195	gene_8210	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655195	mRNA_8210-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8210	CDS_8210	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:55722..57766+
coding sequence from alignment at scaffold_23:55722..57766+

mRNA sequence

>mRNA_8210 ID=mRNA_8210|Name=jgi.p|Nanoce1779_2|655195|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
ATGGCCCCGATTGAATGTGGAAATCCCCGCCGTGTCCCGATTTGCATCCT
CGGCGCCGGCCCACAGGCCTTGGCCCTCGCTGCGGCCTTGCTCGACTCCC
AGCCCTTCTCTCTCGACGATGATGCTGCTCTGACCGCCAACACACGCGTC
CGACACCTGGCCAACCAACAAGGGCCTGTGTGCAAACCTGCAGATATTAT
GATCGTCGATCAAGCCGGGAAGTGGCTAAATGGATGGAGTCAAGCCTTTG
CTTTCTTCGAGATCCCCACCTTGCGTTCGCCCATGCTGGCCCATCCCGAT
CCTCGCACCGAGCTGGCATTGTTCGAAGCCGCTTGTGCCGACTACAAAGA
ATGCAAGCGGACAATTTGTCGCAGCGGCGAGCCTTCTACAGATGTGGACC
TGACCGAATGGAACGCTCAAATCTTGCGGAAGGGGAAGAAGACTACTGCC
AGCAGCAGCAGCAACGGCAATAAAAAACGCAGCAGCAAAATTAAGAGCAT
ATGTACCAACCATATTAAGCCTTTTCTCGAAGATCGGGAGTTTCTCTACG
CCCGTCCGTCAACCACAGCCTTTGCGCGGCTCTGCCATGGGTTGGTGAAT
CGATACAACCTTGGAGACAAGGTGGTCGCAGCTTCAGCAATATCCCTGAC
TCGTGCGCAAGACGAGAGCAATGACGTGATCATAAAGCTGTCAGACGGGC
AAATCATGCGAGCAGGACGTGTAATCTGTTGCATGGGCCCAAATGGTCGG
CCCCGGATTCCGGAGTGGGCATTGCCTTATCATGGATTGAAGCGCATCGC
TGTGATCGAGCGGACAGAGAAGGAGGGGCAAGAGCCGATGGAGGAGACGA
AAGAGGTCCAAGAGAATGTGGAGTCGAGGAATGATATAGTGCAGAGCATG
GCTAAAGGAAACGATGGAACAACCATGCCATCTGTGCGGAAAACCCCGTC
GTCCGTTGTCATCCCGACTATTCTGCACTCCAACGAGCTCCTCGGCCTAG
GCCTGAAATCGCCGGTATCCCTCTATCGGGGCCAACATGTGCTCGTTGTC
GGAGGCGGTTTGACGTCTGCCCACCTGGTGCTCTCTGCACACCGGCACGG
CGCGGCCTCTGTTACCCTGCTGACACGTCGTCAAGTCCGCGTCCAGGAAT
TTTGTGTGGACCTGGCCTGGGTCGGTCGGGCGCGGCATTTGCTGTTATCT
GACTACCGGGGGCAACCTGTGGAAGAACGCGTCCGTACCCTTCGGACTGC
GCGTCCGGGAGGGTCCATTAGTCCGGTCATTATGAAGGAGCTGAGGACAT
TGATGGAGCGAGCAGGAGGCAAGGTTGTCATGTACGAGGAGGCGGAGGTC
ACCGGCATTTTGCCGTTGGCGTTTTCATCCTCTTCGACTTGTTTGCCTTC
GTCCTTTTGCGTCACCCTCAGCACGGGCGTCGTCCTTCCCAGGGTAGACC
GTCTGTTGCTTGCCACCGGCAGTGCCGTCGATGTAACGAAAGATCCCTTG
CTCTCCCCCTTGCTGATCCCTCAAGTGAACGACCAGATAGCAGAAAAAAT
GGCAATCCCAACCCCGACTCCGACCACCTGCCAAGGCTTTCCCGTTGTCG
GACCGTCCTTGCGCTTGAATTTGCAAGGGGCAGACAAAGAGATGAAGGTC
CACGTGATGGGGCCCTATGCTGCGTTACAGGTGGGACCTGATGCGGCGAA
CTTGACAGGAGCAATGACGGCGTCTCGGCTCTTGGCAGACGTGATACGAG
CAGAGAGAAGGGAGGAGGAGGAAACGGAAGACGGGCAGGTGGGGAAGAAG
AAGGAAGCAACGAGAAACATCCACGCGTTTAATAATCCATTTGATGTCCT
GTGCGAGGACGAGGACAAGGACGAGGACAAGGAGGAGGAGAATTAAGGAG
ACAGAGTTATAAATGAGGACGACGAGGTACAGAGGGCACGATGAAAGCAG
CTTTGGGGCGCTAACGCGAGAGATTGGAAGAGACTGATGGTAGAAGAGGA
CGATATATCGAAAGTAGCTACACATGAGACACGGCACGAGAATAT

protein sequence of jgi.p|Nanoce1779_2|655195

>mRNA_8210-protein ID=mRNA_8210-protein|Name=jgi.p|Nanoce1779_2|655195|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MAPIECGNPRRVPICILGAGPQALALAAALLDSQPFSLDDDAALTANTRV
RHLANQQGPVCKPADIMIVDQAGKWLNGWSQAFAFFEIPTLRSPMLAHPD
PRTELALFEAACADYKECKRTICRSGEPSTDVDLTEWNAQILRKGKKTTA
SSSSNGNKKRSSKIKSICTNHIKPFLEDREFLYARPSTTAFARLCHGLVN
RYNLGDKVVAASAISLTRAQDESNDVIIKLSDGQIMRAGRVICCMGPNGR
PRIPEWALPYHGLKRIAVIERTEKEGQEPMEETKEVQENVESRNDIVQSM
AKGNDGTTMPSVRKTPSSVVIPTILHSNELLGLGLKSPVSLYRGQHVLVV
GGGLTSAHLVLSAHRHGAASVTLLTRRQVRVQEFCVDLAWVGRARHLLLS
DYRGQPVEERVRTLRTARPGGSISPVIMKELRTLMERAGGKVVMYEEAEV
TGILPLAFSSSSTCLPSSFCVTLSTGVVLPRVDRLLLATGSAVDVTKDPL
LSPLLIPQVNDQIAEKMAIPTPTPTTCQGFPVVGPSLRLNLQGADKEMKV
HVMGPYAALQVGPDAANLTGAMTASRLLADVIRAERREEEETEDGQVGKK
KEATRNIHAFNNPFDVLCEDEDKDEDKEEEN*

mRNA from alignment at scaffold_23:55722..57766+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8210 ID=mRNA_8210|Name=jgi.p|Nanoce1779_2|655195|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp|location=Sequence derived from alignment at scaffold_23:55722..57766+ (Nannochloropsis oceanica)
ATGGCCCCGATTGAATGTGGAAATCCCCGCCGTGTCCCGATTTGCATCCT
CGGCGCCGGCCCACAGGCCTTGGCCCTCGCTGCGGCCTTGCTCGACTCCC
AGCCCTTCTCTCTCGACGATGATGCTGCTCTGACCGCCAACACACGCGTC
CGACACCTGGCCAACCAACAAGGGCCTGTGTGCAAACCTGCAGATATTAT
GATCGTCGATCAAGCCGGGAAGTGGCTAAATGGATGGAGTCAAGCCTTTG
CTTTCTTCGAGATCCCCACCTTGCGTTCGCCCATGCTGGCCCATCCCGAT
CCTCGCACCGAGCTGGCATTGTTCGAAGCCGCTTGTGCCGACTACAAAGA
ATGCAAGCGGACAATTTGTCGCAGCGGCGAGCCTTCTACAGATGTGGACC
TGACCGAATGGAACGCTCAAATCTTGCGGAAGGGGAAGAAGACTACTGCC
AGCAGCAGCAGCAACGGCAATAAAAAACGCAGCAGCAAAATTAAGAGCAT
ATGTACCAACCATATTAAGCCTTTTCTCGAAGATCGGGAGTTTCTCTACG
CCCGTCCGTCAACCACAGCCTTTGCGCGGCTCTGCCATGGGTTGGTGAAT
CGATACAACCTTGGAGACAAGGTGGTCGCAGCTTCAGCAATATCCCTGAC
TCGTGCGCAAGACGAGAGCAATGACGTGATCATAAAGCTGTCAGACGGGC
AAATCATGCGAGCAGGACGTGTAATCTGTTGCATGGGCCCAAATGGTCGG
CCCCGGATTCCGGAGTGGGCATTGCCTTATCATGGATTGAAGCGCATCGC
TGTGATCGAGCGGACAGAGAAGGAGGGGCAAGAGCCGATGGAGGAGACGA
AAGAGGTCCAAGAGAATGTGGAGTCGAGGAATGATATAGTGCAGAGCATG
GCTAAAGGAAACGATGGAACAACCATGCCATCTGTGCGGAAAACCCCGTC
GTCCGTTGTCATCCCGACTATTCTGCACTCCAACGAGCTCCTCGGCCTAG
GCCTGAAATCGCCGGTATCCCTCTATCGGGGCCAACATGTGCTCGTTGTC
GGAGGCGGTTTGACGTCTGCCCACCTGGTGCTCTCTGCACACCGGCACGG
CGCGGCCTCTGTTACCCTGCTGACACGTCGTCAAGTCCGCGTCCAGGAAT
TTTGTGTGGACCTGGCCTGGGTCGGTCGGGCGCGGCATTTGCTGTTATCT
GACTACCGGGGGCAACCTGTGGAAGAACGCGTCCGTACCCTTCGGACTGC
GCGTCCGGGAGGGTCCATTAGTCCGGTCATTATGAAGGAGCTGAGGACAT
TGATGGAGCGAGCAGGAGGCAAGGTTGTCATGTACGAGGAGGCGGAGGTC
ACCGGCATTTTGCCGTTGGCGTTTTCATCCTCTTCGACTTGTTTGCCTTC
GTCCTTTTGCGTCACCCTCAGCACGGGCGTCGTCCTTCCCAGGGTAGACC
GTCTGTTGCTTGCCACCGGCAGTGCCGTCGATGTAACGAAAGATCCCTTG
CTCTCCCCCTTGCTGATCCCTCAAGTGAACGACCAGATAGCAGAAAAAAT
GGCAATCCCAACCCCGACTCCGACCACCTGCCAAGGCTTTCCCGTTGTCG
GACCGTCCTTGCGCTTGAATTTGCAAGGGGCAGACAAAGAGATGAAGGTC
CACGTGATGGGGCCCTATGCTGCGTTACAGGTGGGACCTGATGCGGCGAA
CTTGACAGGAGCAATGACGGCGTCTCGGCTCTTGGCAGACGTGATACGAG
CAGAGAGAAGGGAGGAGGAGGAAACGGAAGACGGGCAGGTGGGGAAGAAG
AAGGAAGCAACGAGAAACATCCACGCGTTTAATAATCCATTTGATGTCCT
GTGCGAGGACGAGGACAAGGACGAGGACAAGGAGGAGGAGAATTAAGGAG
ACAGAGTTATAAATGAGGACGACGAGGTACAGAGGGCACGATGAAAGCAG
CTTTGGGGCGCTAACGCGAGAGATTGGAAGAGACTGATGGTAGAAGAGGA
CGATATATCGAAAGTAGCTACACATGAGACACGGCACGAGAATAT

Coding sequence (CDS) from alignment at scaffold_23:55722..57766+

>mRNA_8210 ID=mRNA_8210|Name=jgi.p|Nanoce1779_2|655195|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_23:55722..57766+ (Nannochloropsis oceanica)
ATGGCCCCGATTGAATGTGGAAATCCCCGCCGTGTCCCGATTTGCATCCT
CGGCGCCGGCCCACAGGCCTTGGCCCTCGCTGCGGCCTTGCTCGACTCCC
AGCCCTTCTCTCTCGACGATGATGCTGCTCTGACCGCCAACACACGCGTC
CGACACCTGGCCAACCAACAAGGGCCTGTGTGCAAACCTGCAGATATTAT
GATCGTCGATCAAGCCGGGAAGTGGCTAAATGGATGGAGTCAAGCCTTTG
CTTTCTTCGAGATCCCCACCTTGCGTTCGCCCATGCTGGCCCATCCCGAT
CCTCGCACCGAGCTGGCATTGTTCGAAGCCGCTTGTGCCGACTACAAAGA
ATGCAAGCGGACAATTTGTCGCAGCGGCGAGCCTTCTACAGATGTGGACC
TGACCGAATGGAACGCTCAAATCTTGCGGAAGGGGAAGAAGACTACTGCC
AGCAGCAGCAGCAACGGCAATAAAAAACGCAGCAGCAAAATTAAGAGCAT
ATGTACCAACCATATTAAGCCTTTTCTCGAAGATCGGGAGTTTCTCTACG
CCCGTCCGTCAACCACAGCCTTTGCGCGGCTCTGCCATGGGTTGGTGAAT
CGATACAACCTTGGAGACAAGGTGGTCGCAGCTTCAGCAATATCCCTGAC
TCGTGCGCAAGACGAGAGCAATGACGTGATCATAAAGCTGTCAGACGGGC
AAATCATGCGAGCAGGACGTGTAATCTGTTGCATGGGCCCAAATGGTCGG
CCCCGGATTCCGGAGTGGGCATTGCCTTATCATGGATTGAAGCGCATCGC
TGTGATCGAGCGGACAGAGAAGGAGGGGCAAGAGCCGATGGAGGAGACGA
AAGAGGTCCAAGAGAATGTGGAGTCGAGGAATGATATAGTGCAGAGCATG
GCTAAAGGAAACGATGGAACAACCATGCCATCTGTGCGGAAAACCCCGTC
GTCCGTTGTCATCCCGACTATTCTGCACTCCAACGAGCTCCTCGGCCTAG
GCCTGAAATCGCCGGTATCCCTCTATCGGGGCCAACATGTGCTCGTTGTC
GGAGGCGGTTTGACGTCTGCCCACCTGGTGCTCTCTGCACACCGGCACGG
CGCGGCCTCTGTTACCCTGCTGACACGTCGTCAAGTCCGCGTCCAGGAAT
TTTGTGTGGACCTGGCCTGGGTCGGTCGGGCGCGGCATTTGCTGTTATCT
GACTACCGGGGGCAACCTGTGGAAGAACGCGTCCGTACCCTTCGGACTGC
GCGTCCGGGAGGGTCCATTAGTCCGGTCATTATGAAGGAGCTGAGGACAT
TGATGGAGCGAGCAGGAGGCAAGGTTGTCATGTACGAGGAGGCGGAGGTC
ACCGGCATTTTGCCGTTGGCGTTTTCATCCTCTTCGACTTGTTTGCCTTC
GTCCTTTTGCGTCACCCTCAGCACGGGCGTCGTCCTTCCCAGGGTAGACC
GTCTGTTGCTTGCCACCGGCAGTGCCGTCGATGTAACGAAAGATCCCTTG
CTCTCCCCCTTGCTGATCCCTCAAGTGAACGACCAGATAGCAGAAAAAAT
GGCAATCCCAACCCCGACTCCGACCACCTGCCAAGGCTTTCCCGTTGTCG
GACCGTCCTTGCGCTTGAATTTGCAAGGGGCAGACAAAGAGATGAAGGTC
CACGTGATGGGGCCCTATGCTGCGTTACAGGTGGGACCTGATGCGGCGAA
CTTGACAGGAGCAATGACGGCGTCTCGGCTCTTGGCAGACGTGATACGAG
CAGAGAGAAGGGAGGAGGAGGAAACGGAAGACGGGCAGGTGGGGAAGAAG
AAGGAAGCAACGAGAAACATCCACGCGTTTAATAATCCATTTGATGTCCT
GTGCGAGGACGAGGACAAGGACGAGGACAAGGAGGAGGAGAATTAA

Synonyms

Publications