jgi.p|Nanoce1779_2|574255, mRNA_821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574255
Unique NamemRNA_821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1150
Alignment locationscaffold_2:509228..510377 +

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Properties
Property NameValue
TranscriptId574341
TrackFilteredModels2
ProteinId574255
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:509228..510377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574255gene_821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574255mRNA_821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_821CDS_821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_821 ID=mRNA_821|Name=jgi.p|Nanoce1779_2|574255|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
ACAGGCTAGTTGCCATTCCTACTCGTTGTCGTCTCCTTGACTAGCGTATC
AACCTCCCCTCTCCTTTGTCGAAAGGTCACTGCTGTGTCCCTCATCCCCT
TCGAGCAGGCGCCCCTCGTCAGCAATCTATGTTTAGGACAACCCTATCTC
TCGTCATCATTTTTTTCCTGCAAGCGGCGATCCGCAGCCTCGCCTTTCTT
CCCTCTACAGCCACGCCACCACTCGTAACCCATGTCACACGCCTTGCCCT
TTCCAATTCTCAAGCATTACGACACGCCGCCATCTCCACGTACTCATCAC
CGAGATGGCACCGAGCAGGAACTTGGCTAGCTATGGCAGCAGGATACCCC
TCTTCTTCCTCTTCCTCCTCCCGCGATCGCATCACCATCACCCTCTCCAC
CTCCGCTCCCTCAGTCTACATCCTCCGACAGACCCTTTATTCCGGCAGTT
CTACAGCAGCAACATGGAGTGTCACCAAGACATGGTTGGACATTGACGAA
TGGCAGGCGCAGGCAAACAGGAGGCTAGGCTACGTCTTTCCACCCTTGCC
CTCTCAAGAACTCTCGGCGGATAACATTTTGCTTCTCGAAGCTTACCTGA
ACCAAGTCGTTCAAAATGACGCCCTGTGGAGAGGCAGCAGCGATGCAACT
TCCCTCCTGGCCTTTTTCCAGCTCCCCACCTCTGTAACAGAAGACATGTC
CACCCCTACTTACAGCGTTGATGTCTTCGACGTGGATGGAACCCAAATTA
GAGGGGAGGAAAAAAACGCCAAGGACGTGAAGACGGGGGCATTGCTGGCG
GGTGCTACCGCGGGATTTTTCCTCGGAGGTCCATTTGGTGCTGCGTTGGG
GGCATTGGCTGCGAATAGCGCTTCGTCCAGAGACGACAGTTTGGGGGATT
TGACACGGACGGCGGGGAAGGGTTTTAATGTGGCTGTAAAACAGGTGAAG
AGGTTTAACGATCGGTATGACCTGACGGAGAGGGGCAAGGAGATTTTCAG
GAAGGGAGTGAATACTGTCAAGAATGTCGTGGATAAGATGGAGGAGTAGC
TTTTGGAGAAAGAGAAGACATGGTATGATGGAGGAAGGCGTATGGTGAAG
ATGTAGTGACGGGGAAACCAGAAATTACAGAACATTATTCAGTCTGTGTA
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protein sequence of jgi.p|Nanoce1779_2|574255

>mRNA_821-protein ID=mRNA_821-protein|Name=jgi.p|Nanoce1779_2|574255|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MFRTTLSLVIIFFLQAAIRSLAFLPSTATPPLVTHVTRLALSNSQALRHA
AISTYSSPRWHRAGTWLAMAAGYPSSSSSSSRDRITITLSTSAPSVYILR
QTLYSGSSTAATWSVTKTWLDIDEWQAQANRRLGYVFPPLPSQELSADNI
LLLEAYLNQVVQNDALWRGSSDATSLLAFFQLPTSVTEDMSTPTYSVDVF
DVDGTQIRGEEKNAKDVKTGALLAGATAGFFLGGPFGAALGALAANSASS
RDDSLGDLTRTAGKGFNVAVKQVKRFNDRYDLTERGKEIFRKGVNTVKNV
VDKMEE*
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mRNA from alignment at scaffold_2:509228..510377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_821 ID=mRNA_821|Name=jgi.p|Nanoce1779_2|574255|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_2:509228..510377+ (Nannochloropsis oceanica)
ACAGGCTAGTTGCCATTCCTACTCGTTGTCGTCTCCTTGACTAGCGTATC
AACCTCCCCTCTCCTTTGTCGAAAGGTCACTGCTGTGTCCCTCATCCCCT
TCGAGCAGGCGCCCCTCGTCAGCAATCTATGTTTAGGACAACCCTATCTC
TCGTCATCATTTTTTTCCTGCAAGCGGCGATCCGCAGCCTCGCCTTTCTT
CCCTCTACAGCCACGCCACCACTCGTAACCCATGTCACACGCCTTGCCCT
TTCCAATTCTCAAGCATTACGACACGCCGCCATCTCCACGTACTCATCAC
CGAGATGGCACCGAGCAGGAACTTGGCTAGCTATGGCAGCAGGATACCCC
TCTTCTTCCTCTTCCTCCTCCCGCGATCGCATCACCATCACCCTCTCCAC
CTCCGCTCCCTCAGTCTACATCCTCCGACAGACCCTTTATTCCGGCAGTT
CTACAGCAGCAACATGGAGTGTCACCAAGACATGGTTGGACATTGACGAA
TGGCAGGCGCAGGCAAACAGGAGGCTAGGCTACGTCTTTCCACCCTTGCC
CTCTCAAGAACTCTCGGCGGATAACATTTTGCTTCTCGAAGCTTACCTGA
ACCAAGTCGTTCAAAATGACGCCCTGTGGAGAGGCAGCAGCGATGCAACT
TCCCTCCTGGCCTTTTTCCAGCTCCCCACCTCTGTAACAGAAGACATGTC
CACCCCTACTTACAGCGTTGATGTCTTCGACGTGGATGGAACCCAAATTA
GAGGGGAGGAAAAAAACGCCAAGGACGTGAAGACGGGGGCATTGCTGGCG
GGTGCTACCGCGGGATTTTTCCTCGGAGGTCCATTTGGTGCTGCGTTGGG
GGCATTGGCTGCGAATAGCGCTTCGTCCAGAGACGACAGTTTGGGGGATT
TGACACGGACGGCGGGGAAGGGTTTTAATGTGGCTGTAAAACAGGTGAAG
AGGTTTAACGATCGGTATGACCTGACGGAGAGGGGCAAGGAGATTTTCAG
GAAGGGAGTGAATACTGTCAAGAATGTCGTGGATAAGATGGAGGAGTAGC
TTTTGGAGAAAGAGAAGACATGGTATGATGGAGGAAGGCGTATGGTGAAG
ATGTAGTGACGGGGAAACCAGAAATTACAGAACATTATTCAGTCTGTGTA
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Coding sequence (CDS) from alignment at scaffold_2:509228..510377+

>mRNA_821 ID=mRNA_821|Name=jgi.p|Nanoce1779_2|574255|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_2:509228..510377+ (Nannochloropsis oceanica)
ATGTTTAGGACAACCCTATCTCTCGTCATCATTTTTTTCCTGCAAGCGGC
GATCCGCAGCCTCGCCTTTCTTCCCTCTACAGCCACGCCACCACTCGTAA
CCCATGTCACACGCCTTGCCCTTTCCAATTCTCAAGCATTACGACACGCC
GCCATCTCCACGTACTCATCACCGAGATGGCACCGAGCAGGAACTTGGCT
AGCTATGGCAGCAGGATACCCCTCTTCTTCCTCTTCCTCCTCCCGCGATC
GCATCACCATCACCCTCTCCACCTCCGCTCCCTCAGTCTACATCCTCCGA
CAGACCCTTTATTCCGGCAGTTCTACAGCAGCAACATGGAGTGTCACCAA
GACATGGTTGGACATTGACGAATGGCAGGCGCAGGCAAACAGGAGGCTAG
GCTACGTCTTTCCACCCTTGCCCTCTCAAGAACTCTCGGCGGATAACATT
TTGCTTCTCGAAGCTTACCTGAACCAAGTCGTTCAAAATGACGCCCTGTG
GAGAGGCAGCAGCGATGCAACTTCCCTCCTGGCCTTTTTCCAGCTCCCCA
CCTCTGTAACAGAAGACATGTCCACCCCTACTTACAGCGTTGATGTCTTC
GACGTGGATGGAACCCAAATTAGAGGGGAGGAAAAAAACGCCAAGGACGT
GAAGACGGGGGCATTGCTGGCGGGTGCTACCGCGGGATTTTTCCTCGGAG
GTCCATTTGGTGCTGCGTTGGGGGCATTGGCTGCGAATAGCGCTTCGTCC
AGAGACGACAGTTTGGGGGATTTGACACGGACGGCGGGGAAGGGTTTTAA
TGTGGCTGTAAAACAGGTGAAGAGGTTTAACGATCGGTATGACCTGACGG
AGAGGGGCAAGGAGATTTTCAGGAAGGGAGTGAATACTGTCAAGAATGTC
GTGGATAAGATGGAGGAGTAG
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Synonyms
Publications