jgi.p|Nanoce1779_2|186122, mRNA_8206 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|186122
Unique NamemRNA_8206
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1278
Alignment locationscaffold_23:43130..44407 -

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Properties
Property NameValue
TranscriptId186208
TrackFilteredModels2
ProteinId186122
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:43130..44407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186122gene_8206Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|186122mRNA_8206-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8206CDS_8206Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8206 ID=mRNA_8206|Name=jgi.p|Nanoce1779_2|186122|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
GTGGGAGGCGAACAGGACGATACACAAAGTTAGAGGCTAAGTTTAGGTGG
CATGTTTCCCCCCATGTCACACATTCTTGGCAGGACTGCCGTCACGTGCT
GCTCGTGGCACCTCGTCGTCCTGCATTGCCCACGCTTGGATGGCACGTTT
GCATGTACACATAGCAGGTGCCCGGGAAAGGCCGAACGAGTTGAAATACC
TTTTTGATTGTGAACGCGCTGTAGACACTAATCAGTACGCAATCCTGGTC
ATCGTTCGTTCTTATGCTTGTCGTGCATGTTGTGGTGGTGGTCGTGGCGA
GCCAGAAGGCTCGAGTGTCCAAGCGCGAGATATAGACCTCAAAACAACCT
CCTCTGTCACCCTTCAATCAAGTCAAAAGCCCCATTACCACTGCCTTTCA
ATCCATAAGACGCTGCCTTAATGCCCACTACAAACACACCTACAGCCACA
AGACATATGCCATCACGACGACCACCACCGTACCTCTACTCTGCAGTCCC
CCTCCTTTTTCTAGTCGCCTTCATCCTCCCTAAACTCCATGCCTTCCTCC
CCGTGTCTCCCTACTCCACCTCCACCTCCACCTCCTTCTCCTCCACGGCC
CTCCAGGCAAAGAAACCCTCCACCAAAAAAAGCTCTGGAACCGGTGCCAG
CACCGTCAAAGGCTTCGGGAGTGCGAAACCTTCCGCCTCCTCTTCTTCCT
CCTCCACCGTGCAACACCCCCTCCTCAAAGACAAGGGCCACCTCGCCCTC
ATCGACTGGATTCAGACACAAGGCGGACTAATAAACCACCTGGCTGTCGC
CTCGATCCAACCCTATAATATCCGCGGCATCGTTGCTCTAAAGCCCTTCA
AAAAAGGCGACATTATTATTAGCATCCCCTACTCCCTCGCCTTGGACGTC
ACCCCTCCCTCCCTCCCTTCCTCCTCCTCCACCCTCGCGGACCCCATCCC
TGCTGCTCTGGAACTCCTTCGACAGCTTGACGACGAGGAGATTAAAGCGC
GTTATGCACCTTACCTCGCCATGATTCCGTCGGCCACCACCAAGCAGGGG
GAAGGAGGATATGGCCTGACTACAGGTAAGTACCAAAAAGGGGACGAAGG
GGGAGCAAGCGAGCGACACACTTGGGATGAGGGAGGAGAGGGAGGAAGGA
GAGATATATATATGGAAACTAGAGGCTCATCATGCCCTGATTTACCATAA
ATCGTTTATCCATGCCACCATTTTGGTGATTTATCTCATTCTCCTCCTAT
CCTTCCTCCCTCCCTCCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|186122

>mRNA_8206-protein ID=mRNA_8206-protein|Name=jgi.p|Nanoce1779_2|186122|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPTTNTPTATRHMPSRRPPPYLYSAVPLLFLVAFILPKLHAFLPVSPYST
STSTSFSSTALQAKKPSTKKSSGTGASTVKGFGSAKPSASSSSSSTVQHP
LLKDKGHLALIDWIQTQGGLINHLAVASIQPYNIRGIVALKPFKKGDIII
SIPYSLALDVTPPSLPSSSSTLADPIPAALELLRQLDDEEIKARYAPYLA
MIPSATTKQGEGGYGLTTGKYQKGDEGGASERHTWDEGGEGGRRDIYMET
RGSSCPDLP*
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mRNA from alignment at scaffold_23:43130..44407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8206 ID=mRNA_8206|Name=jgi.p|Nanoce1779_2|186122|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_23:43130..44407- (Nannochloropsis oceanica)
GTGGGAGGCGAACAGGACGATACACAAAGTTAGAGGCTAAGTTTAGGTGG
CATGTTTCCCCCCATGTCACACATTCTTGGCAGGACTGCCGTCACGTGCT
GCTCGTGGCACCTCGTCGTCCTGCATTGCCCACGCTTGGATGGCACGTTT
GCATGTACACATAGCAGGTGCCCGGGAAAGGCCGAACGAGTTGAAATACC
TTTTTGATTGTGAACGCGCTGTAGACACTAATCAGTACGCAATCCTGGTC
ATCGTTCGTTCTTATGCTTGTCGTGCATGTTGTGGTGGTGGTCGTGGCGA
GCCAGAAGGCTCGAGTGTCCAAGCGCGAGATATAGACCTCAAAACAACCT
CCTCTGTCACCCTTCAATCAAGTCAAAAGCCCCATTACCACTGCCTTTCA
ATCCATAAGACGCTGCCTTAATGCCCACTACAAACACACCTACAGCCACA
AGACATATGCCATCACGACGACCACCACCGTACCTCTACTCTGCAGTCCC
CCTCCTTTTTCTAGTCGCCTTCATCCTCCCTAAACTCCATGCCTTCCTCC
CCGTGTCTCCCTACTCCACCTCCACCTCCACCTCCTTCTCCTCCACGGCC
CTCCAGGCAAAGAAACCCTCCACCAAAAAAAGCTCTGGAACCGGTGCCAG
CACCGTCAAAGGCTTCGGGAGTGCGAAACCTTCCGCCTCCTCTTCTTCCT
CCTCCACCGTGCAACACCCCCTCCTCAAAGACAAGGGCCACCTCGCCCTC
ATCGACTGGATTCAGACACAAGGCGGACTAATAAACCACCTGGCTGTCGC
CTCGATCCAACCCTATAATATCCGCGGCATCGTTGCTCTAAAGCCCTTCA
AAAAAGGCGACATTATTATTAGCATCCCCTACTCCCTCGCCTTGGACGTC
ACCCCTCCCTCCCTCCCTTCCTCCTCCTCCACCCTCGCGGACCCCATCCC
TGCTGCTCTGGAACTCCTTCGACAGCTTGACGACGAGGAGATTAAAGCGC
GTTATGCACCTTACCTCGCCATGATTCCGTCGGCCACCACCAAGCAGGGG
GAAGGAGGATATGGCCTGACTACAGGTAAGTACCAAAAAGGGGACGAAGG
GGGAGCAAGCGAGCGACACACTTGGGATGAGGGAGGAGAGGGAGGAAGGA
GAGATATATATATGGAAACTAGAGGCTCATCATGCCCTGATTTACCATAA
ATCGTTTATCCATGCCACCATTTTGGTGATTTATCTCATTCTCCTCCTAT
CCTTCCTCCCTCCCTCCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_23:43130..44407-

>mRNA_8206 ID=mRNA_8206|Name=jgi.p|Nanoce1779_2|186122|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_23:43130..44407- (Nannochloropsis oceanica)
ATGCCCACTACAAACACACCTACAGCCACAAGACATATGCCATCACGACG
ACCACCACCGTACCTCTACTCTGCAGTCCCCCTCCTTTTTCTAGTCGCCT
TCATCCTCCCTAAACTCCATGCCTTCCTCCCCGTGTCTCCCTACTCCACC
TCCACCTCCACCTCCTTCTCCTCCACGGCCCTCCAGGCAAAGAAACCCTC
CACCAAAAAAAGCTCTGGAACCGGTGCCAGCACCGTCAAAGGCTTCGGGA
GTGCGAAACCTTCCGCCTCCTCTTCTTCCTCCTCCACCGTGCAACACCCC
CTCCTCAAAGACAAGGGCCACCTCGCCCTCATCGACTGGATTCAGACACA
AGGCGGACTAATAAACCACCTGGCTGTCGCCTCGATCCAACCCTATAATA
TCCGCGGCATCGTTGCTCTAAAGCCCTTCAAAAAAGGCGACATTATTATT
AGCATCCCCTACTCCCTCGCCTTGGACGTCACCCCTCCCTCCCTCCCTTC
CTCCTCCTCCACCCTCGCGGACCCCATCCCTGCTGCTCTGGAACTCCTTC
GACAGCTTGACGACGAGGAGATTAAAGCGCGTTATGCACCTTACCTCGCC
ATGATTCCGTCGGCCACCACCAAGCAGGGGGAAGGAGGATATGGCCTGAC
TACAGGTAAGTACCAAAAAGGGGACGAAGGGGGAGCAAGCGAGCGACACA
CTTGGGATGAGGGAGGAGAGGGAGGAAGGAGAGATATATATATGGAAACT
AGAGGCTCATCATGCCCTGATTTACCATAA
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Synonyms
Publications