jgi.p|Nanoce1779_2|632679, mRNA_8205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632679
Unique NamemRNA_8205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length848
Alignment locationscaffold_23:42283..43130 -

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Properties
Property NameValue
TranscriptId632765
TrackFilteredModels2
ProteinId632679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:42283..43130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632679gene_8205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632679mRNA_8205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8205CDS_8205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8205 ID=mRNA_8205|Name=jgi.p|Nanoce1779_2|632679|organism=Nannochloropsis oceanica|type=mRNA|length=848bp
CCCTCCCTCCCTCCCTCCCTCCCTCTCCTACACGTAGATTTCTTCACGAA
AAGCGAGCTCGAAAGCTTGCAATGGCCCCCCACTCTCGTCGAGACCAACA
ACCGCATCCAACGCACACAGGAGGCAGCGAAGGAGGGCGGGAGGGAGGAA
GGCCTCGTCCGATGGGCAGTGTGGATGGTGGTCAGTCGGTCGCTGGGAAT
TGCACCTGCCTTGCTGGGGGAGGGGGAGGGAGGGAGAGGCGGAGGGAGGA
GTGGCCAGAGACAGGTTTTGATCCCCTTCCTCGACTTGTGTAACCACGAC
GAGGGGAGCCCCCATGTGCTGACTGGGCGGGAGGGAGGGATGCTTAAGGT
GGTCGCCGGGAGGGAGGTAGGAGTGGGGGAGGAGGTAGCATTTGCCTATG
GAGGGGGGCAGTTGACCAGCGACCGGTTCGTGCAGGATTACGGATTTTTG
GAGGAGAAGGGGGGGGAGGGAGGGGGGAATGGAGGGAGGGATTGGGACAG
GAGGATGGTGCGGGGAATGATAAAGGCGGGGAGGAGGGAGGAGGTGGAGA
GATTTGTGGCGGGCTTTAGAGAAGAGGAGGAGGAGGAGAAGGAAGAGAAG
GAGGGATGGAAAGAGGACGTGGGGGAGAGGGCTAAGATGGCACGGAGGTT
TGCCAGAAGGATGCGAGCAGCATGTGTGGCGGAGTTGGCGAAGTGAAAGG
GAACGGAGGGATGAAGGGGTTGAGGAGGACGGGAAGAACGGAGGGAGGGA
GCGGAAAAAATGTCCAAAGAAAAATACAATGATTAGTAGATGTGTATCGA
GCCCACCTGTCGGACCTTTCCTTTGAGACAGCTGTAGTGAATAGGAAG
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protein sequence of jgi.p|Nanoce1779_2|632679

>mRNA_8205-protein ID=mRNA_8205-protein|Name=jgi.p|Nanoce1779_2|632679|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MVVSRSLGIAPALLGEGEGGRGGGRSGQRQVLIPFLDLCNHDEGSPHVLT
GREGGMLKVVAGREVGVGEEVAFAYGGGQLTSDRFVQDYGFLEEKGGEGG
GNGGRDWDRRMVRGMIKAGRREEVERFVAGFREEEEEEKEEKEGWKEDVG
ERAKMARRFARRMRAACVAELAK*
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mRNA from alignment at scaffold_23:42283..43130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8205 ID=mRNA_8205|Name=jgi.p|Nanoce1779_2|632679|organism=Nannochloropsis oceanica|type=mRNA|length=848bp|location=Sequence derived from alignment at scaffold_23:42283..43130- (Nannochloropsis oceanica)
CCCTCCCTCCCTCCCTCCCTCCCTCTCCTACACGTAGATTTCTTCACGAA
AAGCGAGCTCGAAAGCTTGCAATGGCCCCCCACTCTCGTCGAGACCAACA
ACCGCATCCAACGCACACAGGAGGCAGCGAAGGAGGGCGGGAGGGAGGAA
GGCCTCGTCCGATGGGCAGTGTGGATGGTGGTCAGTCGGTCGCTGGGAAT
TGCACCTGCCTTGCTGGGGGAGGGGGAGGGAGGGAGAGGCGGAGGGAGGA
GTGGCCAGAGACAGGTTTTGATCCCCTTCCTCGACTTGTGTAACCACGAC
GAGGGGAGCCCCCATGTGCTGACTGGGCGGGAGGGAGGGATGCTTAAGGT
GGTCGCCGGGAGGGAGGTAGGAGTGGGGGAGGAGGTAGCATTTGCCTATG
GAGGGGGGCAGTTGACCAGCGACCGGTTCGTGCAGGATTACGGATTTTTG
GAGGAGAAGGGGGGGGAGGGAGGGGGGAATGGAGGGAGGGATTGGGACAG
GAGGATGGTGCGGGGAATGATAAAGGCGGGGAGGAGGGAGGAGGTGGAGA
GATTTGTGGCGGGCTTTAGAGAAGAGGAGGAGGAGGAGAAGGAAGAGAAG
GAGGGATGGAAAGAGGACGTGGGGGAGAGGGCTAAGATGGCACGGAGGTT
TGCCAGAAGGATGCGAGCAGCATGTGTGGCGGAGTTGGCGAAGTGAAAGG
GAACGGAGGGATGAAGGGGTTGAGGAGGACGGGAAGAACGGAGGGAGGGA
GCGGAAAAAATGTCCAAAGAAAAATACAATGATTAGTAGATGTGTATCGA
GCCCACCTGTCGGACCTTTCCTTTGAGACAGCTGTAGTGAATAGGAAG
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Coding sequence (CDS) from alignment at scaffold_23:42283..43130-

>mRNA_8205 ID=mRNA_8205|Name=jgi.p|Nanoce1779_2|632679|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_23:42283..43130- (Nannochloropsis oceanica)
ATGGTGGTCAGTCGGTCGCTGGGAATTGCACCTGCCTTGCTGGGGGAGGG
GGAGGGAGGGAGAGGCGGAGGGAGGAGTGGCCAGAGACAGGTTTTGATCC
CCTTCCTCGACTTGTGTAACCACGACGAGGGGAGCCCCCATGTGCTGACT
GGGCGGGAGGGAGGGATGCTTAAGGTGGTCGCCGGGAGGGAGGTAGGAGT
GGGGGAGGAGGTAGCATTTGCCTATGGAGGGGGGCAGTTGACCAGCGACC
GGTTCGTGCAGGATTACGGATTTTTGGAGGAGAAGGGGGGGGAGGGAGGG
GGGAATGGAGGGAGGGATTGGGACAGGAGGATGGTGCGGGGAATGATAAA
GGCGGGGAGGAGGGAGGAGGTGGAGAGATTTGTGGCGGGCTTTAGAGAAG
AGGAGGAGGAGGAGAAGGAAGAGAAGGAGGGATGGAAAGAGGACGTGGGG
GAGAGGGCTAAGATGGCACGGAGGTTTGCCAGAAGGATGCGAGCAGCATG
TGTGGCGGAGTTGGCGAAGTGA
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Synonyms
Publications