jgi.p|Nanoce1779_2|601104, mRNA_8204 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601104
Unique NamemRNA_8204
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length580
Alignment locationscaffold_23:41710..42289 -

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Properties
Property NameValue
TranscriptId601190
TrackFilteredModels2
ProteinId601104
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:41710..42289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601104gene_8204Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601104mRNA_8204-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8204CDS_8204Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8204 ID=mRNA_8204|Name=jgi.p|Nanoce1779_2|601104|organism=Nannochloropsis oceanica|type=mRNA|length=580bp
TAGGAAGACAAGAAGCAAATGCTTATCAAAATAAAATTTGTATCAAGCCA
TTCGGTTGTTTCGTTGACTCCTGCCACCACTTTCCCCGCCGTTTTAGTTC
ATCTCTATTATTATCATGAATTTCATCATCAATTATCGATCATCCCATCC
CTTCTTCAAGCAATCGCATTGTTTATAAACCACTTGTGTAATAAAAGGAA
TGCGGGGCAAGGGGGCGTTGTGAGATGCTTGTGTGATACTGAGATGGGAC
CCTCTATTGATTTGTGCATGTGCGCGTGGCCCTTCGAGCACCCGGTACCA
TATATGTATATTTTGCTCAATATTTGTCACAATTATGGCATTGTGGTTGG
GCTGTGCCTGTGGATGCACTTGGTACATTTAATGGAAAGGGACAATGGAT
GACCTCCCCACCCCCGAAGCAACAGACACAGCAACGCGTTGCTTCTTCCT
TCCACTTTTCCCCTCATGTCACTACACACTGTCATGTTTCTCACTCCACT
CCCTTGTCTGCCGCTACCCCTGCTAGGTATAGACACCATGGCGGCCCTGG
ATGAGCTCCAGGAGCTGTCGCTGGTGTCCA
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protein sequence of jgi.p|Nanoce1779_2|601104

>mRNA_8204-protein ID=mRNA_8204-protein|Name=jgi.p|Nanoce1779_2|601104|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MLIKIKFVSSHSVVSLTPATTFPAVLVHLYYYHEFHHQLSIIPSLLQAIA
LFINHLCNKRNAGQGGVVRCLCDTEMGPSIDLCMCAWPFEHPVPYMYILL
NICHNYGIVVGLCLWMHLVHLMERDNG*
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mRNA from alignment at scaffold_23:41710..42289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8204 ID=mRNA_8204|Name=jgi.p|Nanoce1779_2|601104|organism=Nannochloropsis oceanica|type=mRNA|length=580bp|location=Sequence derived from alignment at scaffold_23:41710..42289- (Nannochloropsis oceanica)
TAGGAAGACAAGAAGCAAATGCTTATCAAAATAAAATTTGTATCAAGCCA
TTCGGTTGTTTCGTTGACTCCTGCCACCACTTTCCCCGCCGTTTTAGTTC
ATCTCTATTATTATCATGAATTTCATCATCAATTATCGATCATCCCATCC
CTTCTTCAAGCAATCGCATTGTTTATAAACCACTTGTGTAATAAAAGGAA
TGCGGGGCAAGGGGGCGTTGTGAGATGCTTGTGTGATACTGAGATGGGAC
CCTCTATTGATTTGTGCATGTGCGCGTGGCCCTTCGAGCACCCGGTACCA
TATATGTATATTTTGCTCAATATTTGTCACAATTATGGCATTGTGGTTGG
GCTGTGCCTGTGGATGCACTTGGTACATTTAATGGAAAGGGACAATGGAT
GACCTCCCCACCCCCGAAGCAACAGACACAGCAACGCGTTGCTTCTTCCT
TCCACTTTTCCCCTCATGTCACTACACACTGTCATGTTTCTCACTCCACT
CCCTTGTCTGCCGCTACCCCTGCTAGGTATAGACACCATGGCGGCCCTGG
ATGAGCTCCAGGAGCTGTCGCTGGTGTCCA
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Coding sequence (CDS) from alignment at scaffold_23:41710..42289-

>mRNA_8204 ID=mRNA_8204|Name=jgi.p|Nanoce1779_2|601104|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_23:41710..42289- (Nannochloropsis oceanica)
ATGCTTATCAAAATAAAATTTGTATCAAGCCATTCGGTTGTTTCGTTGAC
TCCTGCCACCACTTTCCCCGCCGTTTTAGTTCATCTCTATTATTATCATG
AATTTCATCATCAATTATCGATCATCCCATCCCTTCTTCAAGCAATCGCA
TTGTTTATAAACCACTTGTGTAATAAAAGGAATGCGGGGCAAGGGGGCGT
TGTGAGATGCTTGTGTGATACTGAGATGGGACCCTCTATTGATTTGTGCA
TGTGCGCGTGGCCCTTCGAGCACCCGGTACCATATATGTATATTTTGCTC
AATATTTGTCACAATTATGGCATTGTGGTTGGGCTGTGCCTGTGGATGCA
CTTGGTACATTTAATGGAAAGGGACAATGGATGA
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Synonyms
Publications