jgi.p|Nanoce1779_2|559243, mRNA_8199 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559243
Unique NamemRNA_8199
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1200
Alignment locationscaffold_23:28488..29837 +

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Properties
Property NameValue
TranscriptId559329
TrackFilteredModels2
ProteinId559243
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:28488..29837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559243gene_8199Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559243mRNA_8199-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8199CDS_8199Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8199 ID=mRNA_8199|Name=jgi.p|Nanoce1779_2|559243|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
TTTTGTCCCTCCTCCTTCTCGCTGCATGCTCTTGTTGAAGCTCCCGTGGC
CCTGCCATTAACGACTAAATTGCAGCAGCCCCGAGGATTATCATTCAGAA
CATGAACGCACCCACCAAGACACGAGCACAGACACAAGCATGTCATCGAT
ACCGTCCCTTCCTTTAGTCTCCTCGCTCCCAAACGTAAATGTTGGTTCCG
GGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATGGAGAAGGGGAC
GGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCCTTGGGCAATTT
ATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGCTGTGGGAGAAG
AAGGGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCAGTGGTGGCTGT
CTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGAAACAGCAGCAG
CAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCATGATTTCGCGATGA
AAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAACGTCGTTGGGGGAA
TGGGTCCGCCTTGATAGAGACTCCGACGACGAGGACGAGGACGAGAAGCA
GGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGACGAAGAAGGGCATG
GAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGGATAGCGGGGAGGAA
GGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCAGGCACAGGCCTTCC
TCCTCCTCCTCATCCTCATGCCATCGTTCCACGTCGCCCCCGTACCAACC
GCCATCGTAATCGTAACCGTTATAAACCCTGTCAACGTTCGCTGCACGTT
GCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGGGGCTATCAAGGCAC
TGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCTCCGACGGCGGTGGA
GTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTCCCAGTCCTCGGGAC
AGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTATATCTTCGGGGGCTT
TGATGGCTCCCAGCGGGTGAATGACTTCATGGGCTTCAGCCTTGACACCC
GGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGGCGCCCACGCCACGG
CACTCGCACACGGGTGTAGTTTACAAGGACAAGTTCTACGTGCTTACCGG
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protein sequence of jgi.p|Nanoce1779_2|559243

>mRNA_8199-protein ID=mRNA_8199-protein|Name=jgi.p|Nanoce1779_2|559243|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSIPSLPLVSSLPNVNVGSGLNAGAAGGSGGDGEGDGGGDALEEMVAPS
LGNLSLSSPDASANVAAVGEEGTNRARAASSGCSGGCLNSSSSSSKSSGR
NSSSSSSSGKKTRRKHDFAMKTPALVSPTLDATSLGEWVRLDRDSDDEDE
DEKQEEQGEGVLEEEDEEGHGEEAEEEEEEEEDSGEEGEAGVNNHPSGAG
TGLPPPPHPHAIVPRRPRTNRHRNRNRYKPCQRSLHVAAVLEDKLIVFGG
YQGTERVADCYLYDFLRRRWSVVVPAPGGHPPPSPRDRHVGVVYKRTFYI
FGGFDGSQRVNDFMGFSLDTREWRSVVCLMGSAPTPRHSHTGVVYKDKFY
VLT
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mRNA from alignment at scaffold_23:28488..29837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8199 ID=mRNA_8199|Name=jgi.p|Nanoce1779_2|559243|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_23:28488..29837+ (Nannochloropsis oceanica)
TTTTGTCCCTCCTCCTTCTCGCTGCATGCTCTTGTTGAAGCTCCCGTGGC
CCTGCCATTAACGACTAAATTGCAGCAGCCCCGAGGATTATCATTCAGAA
CATGAACGTAAGCTCGAAACCATGCCAATTCCATGCCATCCTTGGGCTCT
TTTGGCCGGCCAGAATGCGTTGCCCACTCCCTATCCTATCCTTAAAAGCT
AATCCAATCGGTCCGCTTCCTACCCCCCACCTACTCACAAAACTTTCCCA
CACACAGGCACCCACCAAGACACGAGCACAGACACAAGCATGTCATCGAT
ACCGTCCCTTCCTTTAGTCTCCTCGCTCCCAAACGTAAATGTTGGTTCCG
GGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATGGAGAAGGGGAC
GGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCCTTGGGCAATTT
ATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGCTGTGGGAGAAG
AAGGGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCAGTGGTGGCTGT
CTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGAAACAGCAGCAG
CAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCATGATTTCGCGATGA
AAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAACGTCGTTGGGGGAA
TGGGTCCGCCTTGATAGAGACTCCGACGACGAGGACGAGGACGAGAAGCA
GGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGACGAAGAAGGGCATG
GAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGGATAGCGGGGAGGAA
GGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCAGGCACAGGCCTTCC
TCCTCCTCCTCATCCTCATGCCATCGTTCCACGTCGCCCCCGTACCAACC
GCCATCGTAATCGTAACCGTTATAAACCCTGTCAACGTTCGCTGCACGTT
GCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGGGGCTATCAAGGCAC
TGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCTCCGACGGCGGTGGA
GTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTCCCAGTCCTCGGGAC
AGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTATATCTTCGGGGGCTT
TGATGGCTCCCAGCGGGTGAATGACTTCATGGGCTTCAGCCTTGACACCC
GGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGGCGCCCACGCCACGG
CACTCGCACACGGGTGTAGTTTACAAGGACAAGTTCTACGTGCTTACCGG
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Coding sequence (CDS) from alignment at scaffold_23:28488..29837+

>mRNA_8199 ID=mRNA_8199|Name=jgi.p|Nanoce1779_2|559243|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_23:28488..29837+ (Nannochloropsis oceanica)
ATGTCATCGATACCGTCCCTTCCTTTAGTCTCCTCGCTCCCAAACGTAAA
TGTTGGTTCCGGGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATG
GAGAAGGGGACGGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCC
TTGGGCAATTTATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGC
TGTGGGAGAAGAAGGGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCA
GTGGTGGCTGTCTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGA
AACAGCAGCAGCAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCATGA
TTTCGCGATGAAAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAACGT
CGTTGGGGGAATGGGTCCGCCTTGATAGAGACTCCGACGACGAGGACGAG
GACGAGAAGCAGGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGACGA
AGAAGGGCATGGAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGGATA
GCGGGGAGGAAGGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCAGGC
ACAGGCCTTCCTCCTCCTCCTCATCCTCATGCCATCGTTCCACGTCGCCC
CCGTACCAACCGCCATCGTAATCGTAACCGTTATAAACCCTGTCAACGTT
CGCTGCACGTTGCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGGGGC
TATCAAGGCACTGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCTCCG
ACGGCGGTGGAGTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTCCCA
GTCCTCGGGACAGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTATATC
TTCGGGGGCTTTGATGGCTCCCAGCGGGTGAATGACTTCATGGGCTTCAG
CCTTGACACCCGGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGGCGC
CCACGCCACGGCACTCGCACACGGGTGTAGTTTACAAGGACAAGTTCTAC
GTGCTTACC
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Synonyms
Publications