jgi.p|Nanoce1779_2|632676, mRNA_8195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632676
Unique NamemRNA_8195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length948
Alignment locationscaffold_23:10618..12165 +

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Properties
Property NameValue
TranscriptId632762
TrackFilteredModels2
ProteinId632676
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:10618..12165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632676gene_8195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632676mRNA_8195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8195CDS_8195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8195 ID=mRNA_8195|Name=jgi.p|Nanoce1779_2|632676|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
CCTCCTACCCCTCCCTCCTGGATGAAGGACTCCCAATGCCGTGGCCCTCT
TCACATCGCTGCTGAGCACGGCCAGCCTGCCGTCCTCCTCTTCCTCATTG
AATATCTCTTTCCTTTCCTTCCTCCTTCCCTCCCTCCTTTTGGGCCCGGG
GACGAGGGGAAGGTTGGAGTCGAGGAGCCGGCGGAGGGATATGTACCGCC
AGGAGAACTATCCCCAGCTATCCATGCCCTCCTGGCAAAATCCAAAACGC
CGCCCGCCCTCCCTCCTTTCCTCGTCATCGTCCTCGTCCTCGCCTTCCCC
CCCCCCCCTACCTTTTCCCCTCCCTCTCTCCTAAATCAACCCAGGGGCAG
ACTCCCCTCCATATCAGCGGCTGGCATGGACATGAAGCCTGCTTTCTCCT
CCTCCTTCAGAGCGGGCGCCAATGTAGAAGCAGCGGCAATAGACGGCTTT
ACGGCTTTGCATCACGCTGCCCTCAGGGGGAGGGAGGAAACTGCGACGGC
TTTACTCACGCATGCAGCAGGTTCAACTGAGAAGGATGCCCGCAACACAA
TTGGAGGTACTCCCCTGCATAATGCGTGCTGGGGTCGGAAAAAGGAGGTC
ATTAAATGCTTAGTGGACAAAGGCGCGGATGTTGATGCACTGATGCATGA
CGGACGGACTGCGGCGCACATGCTCGTGGAAGGGAAAAAAACAGGATGGC
ATATGCAAGGCATCGAGAGCAGAGGTCGGGAGTTAGTGGAGGAGTGTCTG
TTAAAGAGGGGCAGGGAGGTAGGACCGTTTTGAACGATGGAGATGGGAAT
GGAGGTAATAAAAGGCGCTGGGGGAAGATAAAATAGACTTTCTGTGCATT
AACTACTCACACAGACTAAAGTAACGACGAAATCGCTCGACAAGCCGATT
GTTTGTGCATAGACACATAAGGAATCAATCGAAAGGACAGAGCAGGAG
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protein sequence of jgi.p|Nanoce1779_2|632676

>mRNA_8195-protein ID=mRNA_8195-protein|Name=jgi.p|Nanoce1779_2|632676|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MKDSQCRGPLHIAAEHGQPAVLLFLIEYLFPFLPPSLPPFGPGDEGKVGV
EEPAEGYVPPGELSPAIHALLAKSKTPPALPPFLVIVLVLAFPPPPTFSP
PSLLNQPRGRLPSISAAGMDMKPAFSSSFRAGANVEAAAIDGFTALHHAA
LRGREETATALLTHAAGSTEKDARNTIGGTPLHNACWGRKKEVIKCLVDK
GADVDALMHDGRTAAHMLVEGKKTGWHMQGIESRGRELVEECLLKRGREV
GPF*
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mRNA from alignment at scaffold_23:10618..12165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8195 ID=mRNA_8195|Name=jgi.p|Nanoce1779_2|632676|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at scaffold_23:10618..12165+ (Nannochloropsis oceanica)
CCTCCTACCCCTCCCTCCTGGATGAAGGACTCCCAATGCCGTGGCCCTCT
TCACATCGCTGCTGAGCACGGCCAGCCTGCCGTCCTCCTCTTCCTCATTG
AATATCTCTTTCCTTTCCTTCCTCCTTCCCTCCCTCCTTTTGGGCCCGGG
GACGAGGGGAAGGTTGGAGTCGAGGAGCCGGCGGAGGGATATGTACCGCC
AGGAGAACTATCCCCAGCTATCCATGCCCTCCTGGCAAAATCCAAAACGC
CGCCCGCCCTCCCTCCTTTCCTCGTCATCGTCCTCGTCCTCGCCTTCCCC
CCCCCCCCTACCTTTTCCCCTCCCTCTCTCCTAAATCAACCCAGGGGCAG
ACTCCCCTCCATATCAGCGGCTGGCATGGACATGAAGCCTGCTTTCTCCT
CCTCCTTCAGGTTAGCGAATCTCGCTCCCTTCCTCCCTCTTTCCCTCCCT
CCCTCTTTCCCTCCCTCCCTCGCTTCCTTTCTATCGCACAATCGCCCAGG
CATTCGCCAACCTCACCTTCCTCCACTCACCCCTCCCATCCTCCCTCTCT
CGGTCCCTCAGGCCGGCGCTGACCCAAATGCCTCCAATATGCAAGCCCGC
ACCCCCCTTCATGCCATCTCCTACAAAGGAAGGACCTCCCTCCTTCTCCC
CCTCCTTAGAGCGGGCGCCAATGTAGAAGCAGCGGCAATAGACGGCTTTA
CGGCTTTGCATCACGCTGCCCTCAGGGGGAGGGAGGAAACTGCGACGGCT
TTACTCACGCATGCAGCAGGTTCAACTGAGAAGGATGTAGGGGGTCGGTT
GACTGCTGGCGTTCCTCCTCCCGCCGCCGCCTCCTCCTCCTCCTCCCCCT
TCTCCTCGCCCTCCTCTCCTTCCTCCTCCTCCTCCTCTCCATCCTCCTCC
CTTCTCGCCTGCTCTGCGCTTCTCTCTTCGCCTCGTCCTCCTCCATTCCC
CTTCCCCGCCACTCCTTCTGCCCTTCCCTCCCTCCCTCCCTCCCTTCTTT
TCCTCCTCCTAACGGCTAGGACTTTTAACGGTAACACTCCTCTCCATCTC
GCCGCCCAAGCCGGTCACCTACCCACCGTCCTCGCCCTCCTCTCCTTCTC
ATCCTTCCCCTTCCTCCCTCCCTCCTTTCTCCTCGAGGCCCGCAACACAA
TTGGAGGTACTCCCCTGCATAATGCGTGCTGGGGTCGGAAAAAGGAGGTC
ATTAAATGCTTAGTGGACAAAGGCGCGGATGTTGATGCACTGATGCATGA
CGGACGGACTGCGGCGCACATGCTCGTGGAAGGGAAAAAAACAGGATGGC
ATATGCAAGGCATCGAGAGCAGAGGTCGGGAGTTAGTGGAGGAGTGTCTG
TTAAAGAGGGGCAGGGAGGTAGGACCGTTTTGAACGATGGAGATGGGAAT
GGAGGTAATAAAAGGCGCTGGGGGAAGATAAAATAGACTTTCTGTGCATT
AACTACTCACACAGACTAAAGTAACGACGAAATCGCTCGACAAGCCGATT
GTTTGTGCATAGACACATAAGGAATCAATCGAAAGGACAGAGCAGGAG
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Coding sequence (CDS) from alignment at scaffold_23:10618..12165+

>mRNA_8195 ID=mRNA_8195|Name=jgi.p|Nanoce1779_2|632676|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_23:10618..12165+ (Nannochloropsis oceanica)
ATGAAGGACTCCCAATGCCGTGGCCCTCTTCACATCGCTGCTGAGCACGG
CCAGCCTGCCGTCCTCCTCTTCCTCATTGAATATCTCTTTCCTTTCCTTC
CTCCTTCCCTCCCTCCTTTTGGGCCCGGGGACGAGGGGAAGGTTGGAGTC
GAGGAGCCGGCGGAGGGATATGTACCGCCAGGAGAACTATCCCCAGCTAT
CCATGCCCTCCTGGCAAAATCCAAAACGCCGCCCGCCCTCCCTCCTTTCC
TCGTCATCGTCCTCGTCCTCGCCTTCCCCCCCCCCCCTACCTTTTCCCCT
CCCTCTCTCCTAAATCAACCCAGGGGCAGACTCCCCTCCATATCAGCGGC
TGGCATGGACATGAAGCCTGCTTTCTCCTCCTCCTTCAGAGCGGGCGCCA
ATGTAGAAGCAGCGGCAATAGACGGCTTTACGGCTTTGCATCACGCTGCC
CTCAGGGGGAGGGAGGAAACTGCGACGGCTTTACTCACGCATGCAGCAGG
TTCAACTGAGAAGGATGCCCGCAACACAATTGGAGGTACTCCCCTGCATA
ATGCGTGCTGGGGTCGGAAAAAGGAGGTCATTAAATGCTTAGTGGACAAA
GGCGCGGATGTTGATGCACTGATGCATGACGGACGGACTGCGGCGCACAT
GCTCGTGGAAGGGAAAAAAACAGGATGGCATATGCAAGGCATCGAGAGCA
GAGGTCGGGAGTTAGTGGAGGAGTGTCTGTTAAAGAGGGGCAGGGAGGTA
GGACCGTTTTGAATGAAGGACTCCCAATGCCGTGGCCCTCTTCACATCGC
TGCTGAGCACGGCCAGCCTGCCGTCCTCCTCTTCCTCATTGAATATCTCT
TTCCTTTCCTTCCTCCTTCCCTCCCTCCTTTTGGGCCCGGGGACGAGGGG
AAGGTTGGAGTCGAGGAGCCGGCGGAGGGATATGTACCGCCAGGAGAACT
ATCCCCAGCTATCCATGCCCTCCTGGCAAAATCCAAAACGCCGCCCGCCC
TCCCTCCTTTCCTCGTCATCGTCCTCGTCCTCGCCTTCCCCCCCCCCCCT
ACCTTTTCCCCTCCCTCTCTCCTAAATCAACCCAGGGGCAGACTCCCCTC
CATATCAGCGGCTGGCATGGACATGAAGCCTGCTTTCTCCTCCTCCTTCA
GAGCGGGCGCCAATGTAGAAGCAGCGGCAATAGACGGCTTTACGGCTTTG
CATCACGCTGCCCTCAGGGGGAGGGAGGAAACTGCGACGGCTTTACTCAC
GCATGCAGCAGGTTCAACTGAGAAGGATGCCCGCAACACAATTGGAGGTA
CTCCCCTGCATAATGCGTGCTGGGGTCGGAAAAAGGAGGTCATTAAATGC
TTAGTGGACAAAGGCGCGGATGTTGATGCACTGATGCATGACGGACGGAC
TGCGGCGCACATGCTCGTGGAAGGGAAAAAAACAGGATGGCATATGCAAG
GCATCGAGAGCAGAGGTCGGGAGTTAGTGGAGGAGTGTCTGTTAAAGAGG
GGCAGGGAGGTAGGACCGTTTTGAATGAAGGACTCCCAATGCCGTGGCCC
TCTTCACATCGCTGCTGAGCACGGCCAGCCTGCCGTCCTCCTCTTCCTCA
TTGAATATCTCTTTCCTTTCCTTCCTCCTTCCCTCCCTCCTTTTGGGCCC
GGGGACGAGGGGAAGGTTGGAGTCGAGGAGCCGGCGGAGGGATATGTACC
GCCAGGAGAACTATCCCCAGCTATCCATGCCCTCCTGGCAAAATCCAAAA
CGCCGCCCGCCCTCCCTCCTTTCCTCGTCATCGTCCTCGTCCTCGCCTTC
CCCCCCCCCCCTACCTTTTCCCCTCCCTCTCTCCTAAATCAACCCAGGGG
CAGACTCCCCTCCATATCAGCGGCTGGCATGGACATGAAGCCTGCTTTCT
CCTCCTCCTTCAGAGCGGGCGCCAATGTAGAAGCAGCGGCAATAGACGGC
TTTACGGCTTTGCATCACGCTGCCCTCAGGGGGAGGGAGGAAACTGCGAC
GGCTTTACTCACGCATGCAGCAGGTTCAACTGAGAAGGATGCCCGCAACA
CAATTGGAGGTACTCCCCTGCATAATGCGTGCTGGGGTCGGAAAAAGGAG
GTCATTAAATGCTTAGTGGACAAAGGCGCGGATGTTGATGCACTGATGCA
TGACGGACGGACTGCGGCGCACATGCTCGTGGAAGGGAAAAAAACAGGAT
GGCATATGCAAGGCATCGAGAGCAGAGGTCGGGAGTTAGTGGAGGAGTGT
CTGTTAAAGAGGGGCAGGGAGGTAGGACCGTTTTGA
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Synonyms
Publications