jgi.p|Nanoce1779_2|204548, mRNA_8192 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|204548
Unique Name	mRNA_8192
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	882
Alignment location	scaffold_25:390672..392631 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	204634
Track	FilteredModels2
ProteinId	204548

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:390672..392631 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|204548	gene_8192	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|204548	mRNA_8192-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8192	CDS_8192	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:390672..392631+
coding sequence from alignment at scaffold_25:390672..392631+

mRNA sequence

>mRNA_8192 ID=mRNA_8192|Name=jgi.p|Nanoce1779_2|204548|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
CGCACCTCATTCGCCCTCCCCCTCCCTCCCTACCTCCCTCCCTCCTTCAG
CCTACCGCCGCACGACGCAGCGGGCGACAGCTTTTGTCGAGCTCCTGGGC
AAGGGTCAATTTCCCTCTGACAGAGACTTCCTCATCGAGCAGTCGGTGGA
CCTGATTTATGAGGACGTCAAGTACCAGCTCCTGGCCATGCAGACTGCGC
CCGGTTCCTTCCTCCTCGCCTGTAACGGCTCAACCGTTGACGCGGAGATT
CGTTCTCTCGCCGACGGTGGCTACCTCGTCATCATTGGAGGGAAGAGTCA
CGTGGCGTATATGAAGGACGAAGCGGGAGGTCTCCGGATGATCCTCAACG
GCCAAACATGCATGTTCACCAAGGAATACGACCCTACCCGCCTCACCACT
GACGTAGCCGGGAAGCTGGCCCGTTGCCTAGTCCCTGATGGCGCCCACTT
AAAGAAGGGCGAGCCCTTCGCCGAGGTGGAAGTCATGAAGATGTTCATGA
ATGTGACAGTGTCCGAGGCCGGCACCATTAAGTGGAAGATGAGCGAAGGC
GCCTCCCTGGCTCCTGGCTCGCTGATGGCCGAGCTAGCGCTAGACGACCC
CCAGTGCGTCACCAAGGCCACCGTCTATGCTGGTGCCCTTCCCTCCCCGA
CGTCAAAGGGCCCTGTGCGCTCCAAGCCCAACCACTCCCTCAAGGTAAAA
ATCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCCCTCCTTTC
CGATACTTCCAGCTTATGTCACGAATGGCTCGTTTTTATCCCATATCACG
CATGACACGGTCCCCTCCCTCTCTCCCTCCCTCCAGGCCGCCCTCTCGTG
CCTAGAGCTGGTCATGAACGGCTTCTGCATCT

protein sequence of jgi.p|Nanoce1779_2|204548

>mRNA_8192-protein ID=mRNA_8192-protein|Name=jgi.p|Nanoce1779_2|204548|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MQTAPGSFLLACNGSTVDAEIRSLADGGYLVIIGGKSHVAYMKDEAGGLR
MILNGQTCMFTKEYDPTRLTTDVAGKLARCLVPDGAHLKKGEPFAEVEVM
KMFMNVTVSEAGTIKWKMSEGASLAPGSLMAELALDDPQCVTKATVYAGA
LPSPTSKGPVRSKPNHSLKVKISLPPSLPSSLSPSLLSDTSSLCHEWLVF
IPYHA*

mRNA from alignment at scaffold_25:390672..392631+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8192 ID=mRNA_8192|Name=jgi.p|Nanoce1779_2|204548|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp|location=Sequence derived from alignment at scaffold_25:390672..392631+ (Nannochloropsis oceanica)
CGCACCTCATTCGCCCTCCCCCTCCCTCCCTACCTCCCTCCCTCCTTCAG
CCTACCGCCGCACGACGCAGCGGGCGACAGCTTTTGTCGAGCTCCTGGGC
AAGGGTCAATTTCCCTCTGACAGAGACTTCCTCATCGAGCAGTCGGTGGA
CCTGATTTATGAGGACGTCAAGTACCAGGTAGGCCCTCCCTCCCTCTCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTTCCTTCCTCCT
CTTCCGCTTGTTTTCCGTTTAGTGTCATTCGAACCATCCTCATCTGTACC
CTCCCTCCCTCTCTCCCTCCCTCCAGCTCCTGGCCATGCAGACTGCGCCC
GGTTCCTTCCTCCTCGCCTGTAACGGCTCAACCGTTGACGCGGAGATTCG
TTCTCTCGCCGACGGTGGCTACCTCGTCATCATTGGAGGGAAGAGTCACG
TGGCGTATATGAAGGACGAAGCGGGAGGTGAGGATGGGAGCAGAGTGAGG
GAGGGAGGCATTGGAAAAAGAAGGAGGAGTTCATGAAAATGGTGGAAGTG
ACGCATCTCCTCACTGTCTTTCTTTCCCCTCATGCAGGTCTCCGGATGAT
CCTCAACGGCCAAACATGCATGTTCACCAAGGTATGTCCTCCCTCCCTCC
CTTCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCT
CCCTCCCTCCCTTCTTTCTTTCCGCTCTACCCTGCGTTTCCCCTGCACTT
TCCCCGATCGCTCCCTCCCTCCTTCCCTCCCTCTCTCCCTTCCTTCCTCT
ACAGGAATACGACCCTACCCGCCTCACCACTGACGTAGCCGGGAAGCTGG
CCCGTTGCCTAGTCCCTGATGGCGCCCACTTAAAGAAGGGCGAGCCCTTC
GCCGAGGTGGAAGTCATGAAGATGTGAGTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCCTCCTGGCCTGGCCTCCATCCCTCCTGGCCTGGCCTT
CATCTCTCCTCAACACCCTCCCTCCCCATCACCACGTATGAGATGCCTTC
AAACTCCCTCCCCATCACCACGTATGAGATGCCTTCACACTCCCTCCCCA
TCACCACGTATGAGATGCCTTCACACTCCCTCCCCATCACCATGTTTGAG
ATGCTTTCACCCTTCCTCCCCTTCACACTCCCTCCCCATCACCATGTTTG
AGATGCTTTCACCCTTCCTCCCCATCACCCTCCCTCCCCATCACCACGTA
TGAGATGCCTTCACCTTCCCTCCCCATCACCCTCCCTCCCATCACCACGT
ATGAGATGCCTTCACCCTCCCTCCCCATCACCACACCAGGCCCTGCCCCC
TCGCCTCCGTCACTCCCAAGCACCAACCCCCATTTCACCCCTCCCTCCCT
CCCTTCCTCCCTCCCTCCCCCCCCCCCTAAGGTTCATGAATGTGACAGTG
TCCGAGGCCGGCACCATTAAGTGGAAGATGAGCGAAGGCGCCTCCCTGGC
TCCTGGCTCGCTGATGGCCGAGCTAGCGCTAGACGACCCCCAGTGCGTCA
CCAAGGCCACCGTAAGCAGGGAGGGAGGGAGGGAGAGCGGGAGGGCGGGA
GGGCGGGAGGGCGGGAGGGCGGGTGTGTGGATGCAAGAAATACCTCAGAC
CAATGAGCCCATCTCTCCCTCCCTCCCTCCGCCCCTTCCTCCCTTCCCAG
GTCTATGCTGGTGCCCTTCCCTCCCCGACGTCAAAGGGCCCTGTGCGCTC
CAAGCCCAACCACTCCCTCAAGGTAAAAATCTCCCTCCCTCCCTCCCTCC
CTTCCTCCCTCTCTCCCTCCCTCCTTTCCGATACTTCCAGCTTATGTCAC
GAATGGCTCGTTTTTATCCCATATCACGCATGACACGGTCCCCTCCCTCT
CTCCCTCCCTCCAGGCCGCCCTCTCGTGCCTAGAGCTGGTCATGAACGGC
TTCTGCATCT

Coding sequence (CDS) from alignment at scaffold_25:390672..392631+

>mRNA_8192 ID=mRNA_8192|Name=jgi.p|Nanoce1779_2|204548|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_25:390672..392631+ (Nannochloropsis oceanica)
ATGCAGACTGCGCCCGGTTCCTTCCTCCTCGCCTGTAACGGCTCAACCGT
TGACGCGGAGATTCGTTCTCTCGCCGACGGTGGCTACCTCGTCATCATTG
GAGGGAAGAGTCACGTGGCGTATATGAAGGACGAAGCGGGAGGTCTCCGG
ATGATCCTCAACGGCCAAACATGCATGTTCACCAAGGAATACGACCCTAC
CCGCCTCACCACTGACGTAGCCGGGAAGCTGGCCCGTTGCCTAGTCCCTG
ATGGCGCCCACTTAAAGAAGGGCGAGCCCTTCGCCGAGGTGGAAGTCATG
AAGATGTTCATGAATGTGACAGTGTCCGAGGCCGGCACCATTAAGTGGAA
GATGAGCGAAGGCGCCTCCCTGGCTCCTGGCTCGCTGATGGCCGAGCTAG
CGCTAGACGACCCCCAGTGCGTCACCAAGGCCACCGTCTATGCTGGTGCC
CTTCCCTCCCCGACGTCAAAGGGCCCTGTGCGCTCCAAGCCCAACCACTC
CCTCAAGGTAAAAATCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTC
CCTCCCTCCTTTCCGATACTTCCAGCTTATGTCACGAATGGCTCGTTTTT
ATCCCATATCACGCATGAATGCAGACTGCGCCCGGTTCCTTCCTCCTCGC
CTGTAACGGCTCAACCGTTGACGCGGAGATTCGTTCTCTCGCCGACGGTG
GCTACCTCGTCATCATTGGAGGGAAGAGTCACGTGGCGTATATGAAGGAC
GAAGCGGGAGGTCTCCGGATGATCCTCAACGGCCAAACATGCATGTTCAC
CAAGGAATACGACCCTACCCGCCTCACCACTGACGTAGCCGGGAAGCTGG
CCCGTTGCCTAGTCCCTGATGGCGCCCACTTAAAGAAGGGCGAGCCCTTC
GCCGAGGTGGAAGTCATGAAGATGTTCATGAATGTGACAGTGTCCGAGGC
CGGCACCATTAAGTGGAAGATGAGCGAAGGCGCCTCCCTGGCTCCTGGCT
CGCTGATGGCCGAGCTAGCGCTAGACGACCCCCAGTGCGTCACCAAGGCC
ACCGTCTATGCTGGTGCCCTTCCCTCCCCGACGTCAAAGGGCCCTGTGCG
CTCCAAGCCCAACCACTCCCTCAAGGTAAAAATCTCCCTCCCTCCCTCCC
TCCCTTCCTCCCTCTCTCCCTCCCTCCTTTCCGATACTTCCAGCTTATGT
CACGAATGGCTCGTTTTTATCCCATATCACGCATGAATGCAGACTGCGCC
CGGTTCCTTCCTCCTCGCCTGTAACGGCTCAACCGTTGACGCGGAGATTC
GTTCTCTCGCCGACGGTGGCTACCTCGTCATCATTGGAGGGAAGAGTCAC
GTGGCGTATATGAAGGACGAAGCGGGAGGTCTCCGGATGATCCTCAACGG
CCAAACATGCATGTTCACCAAGGAATACGACCCTACCCGCCTCACCACTG
ACGTAGCCGGGAAGCTGGCCCGTTGCCTAGTCCCTGATGGCGCCCACTTA
AAGAAGGGCGAGCCCTTCGCCGAGGTGGAAGTCATGAAGATGTTCATGAA
TGTGACAGTGTCCGAGGCCGGCACCATTAAGTGGAAGATGAGCGAAGGCG
CCTCCCTGGCTCCTGGCTCGCTGATGGCCGAGCTAGCGCTAGACGACCCC
CAGTGCGTCACCAAGGCCACCGTCTATGCTGGTGCCCTTCCCTCCCCGAC
GTCAAAGGGCCCTGTGCGCTCCAAGCCCAACCACTCCCTCAAGGTAAAAA
TCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCCCTCCTTTCC
GATACTTCCAGCTTATGTCACGAATGGCTCGTTTTTATCCCATATCACGC
ATGAATGCAGACTGCGCCCGGTTCCTTCCTCCTCGCCTGTAACGGCTCAA
CCGTTGACGCGGAGATTCGTTCTCTCGCCGACGGTGGCTACCTCGTCATC
ATTGGAGGGAAGAGTCACGTGGCGTATATGAAGGACGAAGCGGGAGGTCT
CCGGATGATCCTCAACGGCCAAACATGCATGTTCACCAAGGAATACGACC
CTACCCGCCTCACCACTGACGTAGCCGGGAAGCTGGCCCGTTGCCTAGTC
CCTGATGGCGCCCACTTAAAGAAGGGCGAGCCCTTCGCCGAGGTGGAAGT
CATGAAGATGTTCATGAATGTGACAGTGTCCGAGGCCGGCACCATTAAGT
GGAAGATGAGCGAAGGCGCCTCCCTGGCTCCTGGCTCGCTGATGGCCGAG
CTAGCGCTAGACGACCCCCAGTGCGTCACCAAGGCCACCGTCTATGCTGG
TGCCCTTCCCTCCCCGACGTCAAAGGGCCCTGTGCGCTCCAAGCCCAACC
ACTCCCTCAAGGTAAAAATCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTC
TCTCCCTCCCTCCTTTCCGATACTTCCAGCTTATGTCACGAATGGCTCGT
TTTTATCCCATATCACGCATGAATGCAGACTGCGCCCGGTTCCTTCCTCC
TCGCCTGTAACGGCTCAACCGTTGACGCGGAGATTCGTTCTCTCGCCGAC
GGTGGCTACCTCGTCATCATTGGAGGGAAGAGTCACGTGGCGTATATGAA
GGACGAAGCGGGAGGTCTCCGGATGATCCTCAACGGCCAAACATGCATGT
TCACCAAGGAATACGACCCTACCCGCCTCACCACTGACGTAGCCGGGAAG
CTGGCCCGTTGCCTAGTCCCTGATGGCGCCCACTTAAAGAAGGGCGAGCC
CTTCGCCGAGGTGGAAGTCATGAAGATGTTCATGAATGTGACAGTGTCCG
AGGCCGGCACCATTAAGTGGAAGATGAGCGAAGGCGCCTCCCTGGCTCCT
GGCTCGCTGATGGCCGAGCTAGCGCTAGACGACCCCCAGTGCGTCACCAA
GGCCACCGTCTATGCTGGTGCCCTTCCCTCCCCGACGTCAAAGGGCCCTG
TGCGCTCCAAGCCCAACCACTCCCTCAAGGTAAAAATCTCCCTCCCTCCC
TCCCTCCCTTCCTCCCTCTCTCCCTCCCTCCTTTCCGATACTTCCAGCTT
ATGTCACGAATGGCTCGTTTTTATCCCATATCACGCATGA

Synonyms

Publications