jgi.p|Nanoce1779_2|632949, mRNA_8189 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632949
Unique NamemRNA_8189
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length995
Alignment locationscaffold_25:380492..382113 +

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Properties
Property NameValue
TranscriptId633035
TrackFilteredModels2
ProteinId632949
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:380492..382113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632949gene_8189Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632949mRNA_8189-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8189CDS_8189Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8189 ID=mRNA_8189|Name=jgi.p|Nanoce1779_2|632949|organism=Nannochloropsis oceanica|type=mRNA|length=995bp
CTGCTGTATTTGCGGGTTTGTCGGTTGGGGTTAGTGTGGAAAGCGGAGTG
ATTGATCGGTGTGTGGTGGTGGGGGGGAGGTCAAGTGATAAGGGGGAAAA
ACCATGAGACTGAAACGCAGGATCAATGCGACGAGCAACACTTCGCTACC
GCATATGACAATTCTATTGTCAAAATGGAAAGCCTACATGTTCTGATGCT
TTATGTGAGTGGTTTCGGGATTAGGCCTCGAGAGCAGTAATGATGGCCTT
GGGATGAAGAAAGCTTGACGACACTACCGCTTTGTCGGAGACACAGTTCC
ATGGACCCAACACTTTCCACTCGCACCTACAAACATCATACACATTGCAC
ACAGGCAGCCGCTGCACACAGCACTAGGCAATCACCATGTCCTTCACCGC
GAAGGAATGGACGGAGGAGTACAAACGCTCAAGGGCATTTGTCATAAACC
TTAGAAGCTCATCCTCCGCCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAG
CAACTGGCGAATCTCGAGCAGAGCATCGACAAGCTCGACTACCGCTTGGG
ATTGATGGAGCAAAATCCTGGGCAATTTGGCGTAACCGAGTCCGAGGTCG
TGCGTCGCCGGGAGCTGGTCAAGGGCCTGCGTACACAAGCCTCTGTCATC
AACAGTAGCAATCGAGGGGTGGGAGGAGGAGGAGGGATGGGACCTCGGAC
GCTGGCGCAGCAACGAAGGGAGATTATTAGTGAGCAGGATGAGTTGTTAG
AGGATCTGGGGAAGGGTGTGGATAGGTTGAAGATGAAGGGGCTGACAATA
AGGGACGAGACGACGATGCATCAGAAGCTGTTGGATGATATCGATGGCGA
TGTGGAGGCGGCAGCGTCGTCCTTGAGGTTGGAAGCGCGGCATGCACAAC
GCCTTCGGGAGCAGAGCACTGTGTGTCGGTTGTATTTGTGCATCGTCGTG
TTGCTGATTGTTTTAGTGGTGTTGCTCGTAATTGGCTTTACGTGA
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protein sequence of jgi.p|Nanoce1779_2|632949

>mRNA_8189-protein ID=mRNA_8189-protein|Name=jgi.p|Nanoce1779_2|632949|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSFTAKEWTEEYKRSRAFVINLRSSSSAPASSSSSSRQQLANLEQSIDKL
DYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINSSNRGVGGGGG
MGPRTLAQQRREIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLD
DIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVVLLIVLVVLLVIG
FT*
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mRNA from alignment at scaffold_25:380492..382113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8189 ID=mRNA_8189|Name=jgi.p|Nanoce1779_2|632949|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_25:380492..382113+ (Nannochloropsis oceanica)
CTGCTGTATTTGCGGGTTTGTCGGTTGGGGTTAGTGTGGAAAGCGGAGTG
ATTGATCGGTGTGTGGTGGTGGGGGGGAGGTCAAGTGATAAGGGGGAAAA
ACCATGAGACTGAAACGCAGGATCAATGCGACGAGCAACACTTCGCTACC
GCATATGACAATTCTATTGTCAAAATGGAAAGCCTACATGTTCTGATGCT
TTATGTGAGTGGTTTCGGGATTAGGCCTCGAGAGCAGTAATGATGGCCTT
GGGATGAAGAAAGCTTGACGACACTACCGCTTTGTCGGAGACACAGTTCC
ATGGACCCAACACTTTCCACTCGCACCTACAAACATCATACACATTGCAC
ACAGGCAGCCGCTGCACACAGCACTAGGCAATCACCATGTCCTTCACCGC
GAAGGAATGGACGGAGGAGTACAAACGCTCAAGGGCATTTGTCATAAACC
TTAGAAGCTCATCCTCCGCCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAG
CAACTGGCGAATCTCGAGCAGAGCATCGACAAGCTCGACTACCGCTTGGG
ATTGATGGAGCAAAATCCTGGGCAATTTGGCGTGTACGTTCTGGAAGAAG
GGAGGGAGGGAAGGAGGGAAAGAGGGACCTTGTGTAGGGCGGGCTTTTCA
AAGTCTGTTCACCGCTGAGGGGAAAGCAGCGGGAGAAGGGGGGAAGTTTG
TTTGGGGGCCTAAGCGGACGAAAGACGACGGCAGTGCGCTATCCCACAAC
CTAGGTGTAAATATGTATGTGACGTGTTTGTTCCGCACGAGAGGGAATTG
GGAATGATTTGATCACTCCCGTCTGCCACCGTCGTCATGGGTGCCAGGGT
TGTTGGCACATATTACATCCCCAAGACTCATGAGAAAGAGAAATAGGGTA
GTGGTAGTGTAGATGGCGAAGACGTAGGGCTTGTCGCTGTTTTAAGTCTT
CACCAATTCCTGAACAGTCTCTCCCCTCTCCCCGATCCCGCGCCTGCACC
TTCACTGCCTCCTTCCCAAACACAGCCTTACCCTTACTTGGTGGTTTCGA
ATAGCCTTGATTTTCTCATCGCTCGGTTTATGTCTCTTCCTCAGTCACTT
ACACCACTCCGTCCTTCCTTCCCTTCCTCCCTCCCTGCCTGCCTCCTTCC
CATAGAACCGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCCT
GCGTACACAAGCCTCTGTCATCAACAGTAGCAATCGTAAGTACCAGTGCT
GGTGGAGGAGTTGGCGCTGCTTCCTCTTCGTTTTCTGGAGGAGGGGTGGG
AGGAGGAGGAGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGA
TTATTAGTGAGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGAT
AGGTTGAAGATGAAGGGGCTGACAATAAGGGACGAGACGACGATGCATCA
GAAGCTGTTGGATGATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCT
TGAGGTTGGAAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTG
TGTCGGTTGTATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTT
GCTCGTAATTGGCTTTACGTGA
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Coding sequence (CDS) from alignment at scaffold_25:380492..382113+

>mRNA_8189 ID=mRNA_8189|Name=jgi.p|Nanoce1779_2|632949|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at scaffold_25:380492..382113+ (Nannochloropsis oceanica)
ATGTCCTTCACCGCGAAGGAATGGACGGAGGAGTACAAACGCTCAAGGGC
ATTTGTCATAAACCTTAGAAGCTCATCCTCCGCCCCTGCCTCCTCTTCCT
CCTCGTCGCGGCAGCAACTGGCGAATCTCGAGCAGAGCATCGACAAGCTC
GACTACCGCTTGGGATTGATGGAGCAAAATCCTGGGCAATTTGGCGTAAC
CGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCCTGCGTACAC
AAGCCTCTGTCATCAACAGTAGCAATCGAGGGGTGGGAGGAGGAGGAGGG
ATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGATTATTAGTGAGCA
GGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGATAGGTTGAAGATGA
AGGGGCTGACAATAAGGGACGAGACGACGATGCATCAGAAGCTGTTGGAT
GATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCTTGAGGTTGGAAGC
GCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTGTGTCGGTTGTATT
TGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTTGCTCGTAATTGGC
TTTACGTGAATGTCCTTCACCGCGAAGGAATGGACGGAGGAGTACAAACG
CTCAAGGGCATTTGTCATAAACCTTAGAAGCTCATCCTCCGCCCCTGCCT
CCTCTTCCTCCTCGTCGCGGCAGCAACTGGCGAATCTCGAGCAGAGCATC
GACAAGCTCGACTACCGCTTGGGATTGATGGAGCAAAATCCTGGGCAATT
TGGCGTAACCGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCC
TGCGTACACAAGCCTCTGTCATCAACAGTAGCAATCGAGGGGTGGGAGGA
GGAGGAGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGATTAT
TAGTGAGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGATAGGT
TGAAGATGAAGGGGCTGACAATAAGGGACGAGACGACGATGCATCAGAAG
CTGTTGGATGATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCTTGAG
GTTGGAAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTGTGTC
GGTTGTATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTTGCTC
GTAATTGGCTTTACGTGAATGTCCTTCACCGCGAAGGAATGGACGGAGGA
GTACAAACGCTCAAGGGCATTTGTCATAAACCTTAGAAGCTCATCCTCCG
CCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAGCAACTGGCGAATCTCGAG
CAGAGCATCGACAAGCTCGACTACCGCTTGGGATTGATGGAGCAAAATCC
TGGGCAATTTGGCGTAACCGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGG
TCAAGGGCCTGCGTACACAAGCCTCTGTCATCAACAGTAGCAATCGAGGG
GTGGGAGGAGGAGGAGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAG
GGAGATTATTAGTGAGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTG
TGGATAGGTTGAAGATGAAGGGGCTGACAATAAGGGACGAGACGACGATG
CATCAGAAGCTGTTGGATGATATCGATGGCGATGTGGAGGCGGCAGCGTC
GTCCTTGAGGTTGGAAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCA
CTGTGTGTCGGTTGTATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTG
GTGTTGCTCGTAATTGGCTTTACGTGA
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Synonyms
Publications