jgi.p|Nanoce1779_2|204369, mRNA_8184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|204369
Unique NamemRNA_8184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1077
Alignment locationscaffold_25:365951..367027 -

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Properties
Property NameValue
TranscriptId204455
TrackFilteredModels2
ProteinId204369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:365951..367027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|204369gene_8184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|204369mRNA_8184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8184CDS_8184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8184 ID=mRNA_8184|Name=jgi.p|Nanoce1779_2|204369|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ACGTTGCCTATTCACCCCTTATTCCTTGTCCGAGTTTTTCTAGCGACTTT
GGCAGATTTTTCGATCAGGCAAAGTCCCCGGACGGCCCACACAGGGCCAG
GAGGAGAAGGGGAAGGAGGATGAAAGAGGAGGTCAGAGGGAAGGCTGCAC
ATAGAGTGTCCGCATATCTTGCCGCGGTTGACCAAACCGAAGATCATGGG
GACGAGCTTCCCCACGGACCATACTCCTGTACACCCGCAGGATGTTACGT
GTCCCATTGCCGTCCCGAGATACGAAGTGTTCACAGTTGTCACACCAATA
CAGTTCTCGGATGGCCCGCCCATGACCTCCTCCTCCTCTGCCTCGTCCTC
CTCCTCCTCCTCTTCCGCCTCCTTCACCGCCTCCTCCTTCCCCCCCTCCT
CCTCCTTTGCTTCCACCGCCTCCGCCCCCTCCTCCTCTTTCCCTTCCTCC
TCCTCCCCCTTCTCCTCCTCCTCCTCCTGCTTTTCCTCCTGCTTCTCCTC
CTGCTGCTTCTCCTCCCCCTCTGCTTCCACCGCCTCCTCCTCCTCCTCCC
CGTCCCCTTCCATCCCCTCCTCGTCTCCCTCCTCCTCCTCCCCCTTCTTC
TTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTATTCCTCCT
CTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTATTCCTCCTCTTCC
TCTTCCTCTCCTCCTTCTTCTTCTCCCTCTTCTTCCTCCTCCTCCTCTTC
CTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCT
CCTGCCCTCTTTCCCCTCGTCCTTCCCCTCCTTTCCCTCCCCCTCTTCCT
CCTCGTCGGAGCGCCCTCACTATCTTTCTCTTTCCCTTCTCCCTTCCTCT
TGCAAGTGCTGCACGAATTCTAGCAATGGTTGCTAGTGCTCGTGTTGCCT
TTTGCTTCAATCGCATAAAAGGACCCTAGTCACCGAACTACGCCTCTGCT
TGTATTAGCCCAGACCACTCAGTACGTCTAGTCCAACCTCCCTAAATAAA
ATAACCAATCCAATTCATCATATCCCA
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protein sequence of jgi.p|Nanoce1779_2|204369

>mRNA_8184-protein ID=mRNA_8184-protein|Name=jgi.p|Nanoce1779_2|204369|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MKEEVRGKAAHRVSAYLAAVDQTEDHGDELPHGPYSCTPAGCYVSHCRPE
IRSVHSCHTNTVLGWPAHDLLLLCLVLLLLLFRLLHRLLLPPLLLLCFHR
LRPLLLFPFLLLPLLLLLLLLFLLLLLLLLLLPLCFHRLLLLLPVPFHPL
LVSLLLLPLLLLPLLLLLLLLLPLIPPLLLLLLPLLLPLIPPLPLPLLLL
LLPLLPPPPLPPPPLPPPPPLPPPPPPPALFPLVLPLLSLPLFLLVGAPS
LSFSFPSPFLLQVLHEF*
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mRNA from alignment at scaffold_25:365951..367027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8184 ID=mRNA_8184|Name=jgi.p|Nanoce1779_2|204369|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at scaffold_25:365951..367027- (Nannochloropsis oceanica)
ACGTTGCCTATTCACCCCTTATTCCTTGTCCGAGTTTTTCTAGCGACTTT
GGCAGATTTTTCGATCAGGCAAAGTCCCCGGACGGCCCACACAGGGCCAG
GAGGAGAAGGGGAAGGAGGATGAAAGAGGAGGTCAGAGGGAAGGCTGCAC
ATAGAGTGTCCGCATATCTTGCCGCGGTTGACCAAACCGAAGATCATGGG
GACGAGCTTCCCCACGGACCATACTCCTGTACACCCGCAGGATGTTACGT
GTCCCATTGCCGTCCCGAGATACGAAGTGTTCACAGTTGTCACACCAATA
CAGTTCTCGGATGGCCCGCCCATGACCTCCTCCTCCTCTGCCTCGTCCTC
CTCCTCCTCCTCTTCCGCCTCCTTCACCGCCTCCTCCTTCCCCCCCTCCT
CCTCCTTTGCTTCCACCGCCTCCGCCCCCTCCTCCTCTTTCCCTTCCTCC
TCCTCCCCCTTCTCCTCCTCCTCCTCCTGCTTTTCCTCCTGCTTCTCCTC
CTGCTGCTTCTCCTCCCCCTCTGCTTCCACCGCCTCCTCCTCCTCCTCCC
CGTCCCCTTCCATCCCCTCCTCGTCTCCCTCCTCCTCCTCCCCCTTCTTC
TTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTATTCCTCCT
CTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTATTCCTCCTCTTCC
TCTTCCTCTCCTCCTTCTTCTTCTCCCTCTTCTTCCTCCTCCTCCTCTTC
CTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCT
CCTGCCCTCTTTCCCCTCGTCCTTCCCCTCCTTTCCCTCCCCCTCTTCCT
CCTCGTCGGAGCGCCCTCACTATCTTTCTCTTTCCCTTCTCCCTTCCTCT
TGCAAGTGCTGCACGAATTCTAGCAATGGTTGCTAGTGCTCGTGTTGCCT
TTTGCTTCAATCGCATAAAAGGACCCTAGTCACCGAACTACGCCTCTGCT
TGTATTAGCCCAGACCACTCAGTACGTCTAGTCCAACCTCCCTAAATAAA
ATAACCAATCCAATTCATCATATCCCA
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Coding sequence (CDS) from alignment at scaffold_25:365951..367027-

>mRNA_8184 ID=mRNA_8184|Name=jgi.p|Nanoce1779_2|204369|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_25:365951..367027- (Nannochloropsis oceanica)
ATGAAAGAGGAGGTCAGAGGGAAGGCTGCACATAGAGTGTCCGCATATCT
TGCCGCGGTTGACCAAACCGAAGATCATGGGGACGAGCTTCCCCACGGAC
CATACTCCTGTACACCCGCAGGATGTTACGTGTCCCATTGCCGTCCCGAG
ATACGAAGTGTTCACAGTTGTCACACCAATACAGTTCTCGGATGGCCCGC
CCATGACCTCCTCCTCCTCTGCCTCGTCCTCCTCCTCCTCCTCTTCCGCC
TCCTTCACCGCCTCCTCCTTCCCCCCCTCCTCCTCCTTTGCTTCCACCGC
CTCCGCCCCCTCCTCCTCTTTCCCTTCCTCCTCCTCCCCCTTCTCCTCCT
CCTCCTCCTGCTTTTCCTCCTGCTTCTCCTCCTGCTGCTTCTCCTCCCCC
TCTGCTTCCACCGCCTCCTCCTCCTCCTCCCCGTCCCCTTCCATCCCCTC
CTCGTCTCCCTCCTCCTCCTCCCCCTTCTTCTTCTTCCTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCCTCTTATTCCTCCTCTTCTTCTTCTTCTTCTTC
CTCTTCTTCTTCCTCTTATTCCTCCTCTTCCTCTTCCTCTCCTCCTTCTT
CTTCTCCCTCTTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCC
TCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTGCCCTCTTTCCCCTCG
TCCTTCCCCTCCTTTCCCTCCCCCTCTTCCTCCTCGTCGGAGCGCCCTCA
CTATCTTTCTCTTTCCCTTCTCCCTTCCTCTTGCAAGTGCTGCACGAATT
CTAG
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Synonyms
Publications