jgi.p|Nanoce1779_2|673463, mRNA_8182 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673463
Unique NamemRNA_8182
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1021
Alignment locationscaffold_25:357031..358565 -

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Properties
Property NameValue
TranscriptId673549
TrackFilteredModels2
ProteinId673463
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:357031..358565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673463gene_8182Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673463mRNA_8182-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8182CDS_8182Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8182 ID=mRNA_8182|Name=jgi.p|Nanoce1779_2|673463|organism=Nannochloropsis oceanica|type=mRNA|length=1021bp
ACAGGACTCTCGGTACCCAAACCAGCCCTCTCTCCAACACAAGATGCGCA
TGTCCATGCTCCGCCTAGGTGGGCTCTTCCTCGCCGTGGCCCTCTTTGGT
GCCTGTACGCTCCCCAATGTCGAGGCCAACAAGACGCCCAAGGTCGCAAG
GGTCCGCTATTCCAAGGCCAAGGCCTTCACCGCATGCTTCAGCAACATTA
ACTTCGAGGAGGACGAGGGAAGCGACGACGACATTGATTTTTTCCAATGG
GAAGCTCAGGTTTTCGACTGCTCGGACAACCCAGCAATCGACACTCCAGT
GGGGTCGTCCACCTTTGCTTGCAGCTATGTCGAAGAGCAGGATGATAATT
TCCGTATTGGTGTTTGCAATGGGAACATTGTGATCGCTGGCAATGCGCTT
TACGTGTCCTTCACCATGGACCGCGATGACGTGTCGGAAGACCAATTGTT
CCCTAGCCGAGCCCAGTACCCGGCCATAGTCGGGAGTACCGGGCTCTTCC
CCAGGAATCCTGTCAAGTACGATGATATCGAGTTCGTGAATGGCACGTCG
ACGGATTTCCCCGTGAGTGTCACCCTCACATATAAGGGGAGGCAGTACAA
CCCCATGGTGCCCGTCACCCTGAAGTAGAGTATGCGGGAGACCGTGCTTT
AGCCTACAGTTAATGCCGTGTGTTTGCTTGATGGAAAGAGGGGGCTTTTG
AGAATCTGTCTATGTCGGTTATGTGTGACTTTGATGCCTGTCTTTTCATG
TTTCATTTAGTCATGTCGTATGTGTTTGTGCCAACTAAGTAATCGCTGAT
CTATGTGCTACGCATATTAATATCCATGGAGCGGGCTTAGTCAATGTTCG
TGTCGTGTTTGTATGTGAGATGACCGTGACGCGTAGTGGTGCGAGTCCTT
TTTCGTCAAAAAGAGCTACAAGGCACTACACTGATCCGGCTTCGTCCATC
TCCTTTCCTTATCTTATCTGGCTGTGCAATTTCTGTTATTGAAATCAATG
AAAAAAAAATGGAAAGACGAG
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protein sequence of jgi.p|Nanoce1779_2|673463

>mRNA_8182-protein ID=mRNA_8182-protein|Name=jgi.p|Nanoce1779_2|673463|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRMSMLRLGGLFLAVALFGACTLPNVEANKTPKVARVRYSKAKAFTACFS
NINFEEDEGSDDDIDFFQWEAQVFDCSDNPAIDTPVGSSTFACSYVEEQD
DNFRIGVCNGNIVIAGNALYVSFTMDRDDVSEDQLFPSRAQYPAIVGSTG
LFPRNPVKYDDIEFVNGTSTDFPVSVTLTYKGRQYNPMVPVTLK*
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mRNA from alignment at scaffold_25:357031..358565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8182 ID=mRNA_8182|Name=jgi.p|Nanoce1779_2|673463|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp|location=Sequence derived from alignment at scaffold_25:357031..358565- (Nannochloropsis oceanica)
ACAGGACTCTCGGTACCCAAACCAGCCCTCTCTCCAACACAAGATGCGCA
TGTCCATGCTCCGCCTAGGTGGGCTCTTCCTCGCCGTGGCCCTCTTTGGT
GCCTGTACGCTCCCCAATGTCGAGGCCAACAAGACGCGTAAGTCTTGGGG
GAAGGTGCTTTGCCCTCTGCAGAGGTGGTTCCTGTCCACATAAGTTGAAC
AGAGCTTGAAAAGGCAGCAGTAATGCAGCACCCATCCGTCTCATCTCCAC
ACACCCTCACCCTTGAAACACAGCCAAGGTCGCAAGGGTCCGCTATTCCA
AGGCCAAGGCCTTCACCGCATGCTTCAGCAACATTAACTTCGAGGAGGAC
GAGGGAAGCGACGACGACATTGATTTTTTCCAATGGGAAGCTCAGGTTTT
CGACTGCTCGGACAACGTACGTACTTTTCATGTGCTCCTCGTCCTTGACC
TTAAGCCCATCTGTGTCCATGTTTGAAGCCCACTATTGACCCTTTTTCAC
ACACGACGTTTCATATAGCCAGCAATCGACACTCCAGTGGGGTCGTCCAC
CTTTGCTTGCAGCTATGTCGAAGAGCAGGATGATAATTTCCGTATTGGTG
TTTGCAATGGGAACATTGTGATCGCTGGCAATGCGCTTTACGTGTCCTTC
ACCATGGACCGCGAGTAAGTGCTATTGTGTGCATTATTGTTGTTGTAATG
ATATCATGATTATTATTTTATCTTTATCAAAAGCTCAGCTCTAGGCAGTG
GCGTGCCTAGTTACTTTTGGGGTGCGAGAGAGATCTAGAGAAAAGTGATC
TTTATGCTCGTTTCGCTCCTCTGACTCTTCATGCCTTGCCCAAACCTCAC
CTTAACCAGTGACGTGTCGGAAGACCAATTGTTCCCTAGCCGAGCCCAGT
ACCCGGCCATAGTCGGGAGTACCGGGCTCTTCCCCAGGAATCCTGTCAAG
TACGATGATATCGAGTTCGTGAATGTACGTACACTACATTTAGGTCTCTT
CTCTTTCCGAAACACACACATTTAACCCATCTTCAACTCATACACTACAC
AACAGGGCACGTCGACGGATTTCCCCGTGAGTGTCACCCTCACATATAAG
GGGAGGCAGTACAACCCCATGGTGCCCGTCACCCTGAAGTAGAGTATGCG
GGAGACCGTGCTTTAGCCTACAGTTAATGCCGTGTGTTTGCTTGATGGAA
AGAGGGGGCTTTTGAGAATCTGTCTATGTCGGTTATGTGTGACTTTGATG
CCTGTCTTTTCATGTTTCATTTAGTCATGTCGTATGTGTTTGTGCCAACT
AAGTAATCGCTGATCTATGTGCTACGCATATTAATATCCATGGAGCGGGC
TTAGTCAATGTTCGTGTCGTGTTTGTATGTGAGATGACCGTGACGCGTAG
TGGTGCGAGTCCTTTTTCGTCAAAAAGAGCTACAAGGCACTACACTGATC
CGGCTTCGTCCATCTCCTTTCCTTATCTTATCTGGCTGTGCAATTTCTGT
TATTGAAATCAATGAAAAAAAAATGGAAAGACGAG
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Coding sequence (CDS) from alignment at scaffold_25:357031..358565-

>mRNA_8182 ID=mRNA_8182|Name=jgi.p|Nanoce1779_2|673463|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_25:357031..358565- (Nannochloropsis oceanica)
GGCACGTCGACGGATTTCCCCGTGAGTGTCACCCTCACATATAAGGGGAG
GCAGTACAACCCCATGGTGCCCGTCACCCTGAAGTAGTGACGTGTCGGAA
GACCAATTGTTCCCTAGCCGAGCCCAGTACCCGGCCATAGTCGGGAGTAC
CGGGCTCTTCCCCAGGAATCCTGTCAAGTACGATGATATCGAGTTCGTGA
ATCCAGCAATCGACACTCCAGTGGGGTCGTCCACCTTTGCTTGCAGCTAT
GTCGAAGAGCAGGATGATAATTTCCGTATTGGTGTTTGCAATGGGAACAT
TGTGATCGCTGGCAATGCGCTTTACGTGTCCTTCACCATGGACCGCGACC
AAGGTCGCAAGGGTCCGCTATTCCAAGGCCAAGGCCTTCACCGCATGCTT
CAGCAACATTAACTTCGAGGAGGACGAGGGAAGCGACGACGACATTGATT
TTTTCCAATGGGAAGCTCAGGTTTTCGACTGCTCGGACAACATGCGCATG
TCCATGCTCCGCCTAGGTGGGCTCTTCCTCGCCGTGGCCCTCTTTGGTGC
CTGTACGCTCCCCAATGTCGAGGCCAACAAGACGCGGCACGTCGACGGAT
TTCCCCGTGAGTGTCACCCTCACATATAAGGGGAGGCAGTACAACCCCAT
GGTGCCCGTCACCCTGAAGTAGTGACGTGTCGGAAGACCAATTGTTCCCT
AGCCGAGCCCAGTACCCGGCCATAGTCGGGAGTACCGGGCTCTTCCCCAG
GAATCCTGTCAAGTACGATGATATCGAGTTCGTGAATCCAGCAATCGACA
CTCCAGTGGGGTCGTCCACCTTTGCTTGCAGCTATGTCGAAGAGCAGGAT
GATAATTTCCGTATTGGTGTTTGCAATGGGAACATTGTGATCGCTGGCAA
TGCGCTTTACGTGTCCTTCACCATGGACCGCGACCAAGGTCGCAAGGGTC
CGCTATTCCAAGGCCAAGGCCTTCACCGCATGCTTCAGCAACATTAACTT
CGAGGAGGACGAGGGAAGCGACGACGACATTGATTTTTTCCAATGGGAAG
CTCAGGTTTTCGACTGCTCGGACAACATGCGCATGTCCATGCTCCGCCTA
GGTGGGCTCTTCCTCGCCGTGGCCCTCTTTGGTGCCTGTACGCTCCCCAA
TGTCGAGGCCAACAAGACGCGGCACGTCGACGGATTTCCCCGTGAGTGTC
ACCCTCACATATAAGGGGAGGCAGTACAACCCCATGGTGCCCGTCACCCT
GAAGTAGTGACGTGTCGGAAGACCAATTGTTCCCTAGCCGAGCCCAGTAC
CCGGCCATAGTCGGGAGTACCGGGCTCTTCCCCAGGAATCCTGTCAAGTA
CGATGATATCGAGTTCGTGAATCCAGCAATCGACACTCCAGTGGGGTCGT
CCACCTTTGCTTGCAGCTATGTCGAAGAGCAGGATGATAATTTCCGTATT
GGTGTTTGCAATGGGAACATTGTGATCGCTGGCAATGCGCTTTACGTGTC
CTTCACCATGGACCGCGACCAAGGTCGCAAGGGTCCGCTATTCCAAGGCC
AAGGCCTTCACCGCATGCTTCAGCAACATTAACTTCGAGGAGGACGAGGG
AAGCGACGACGACATTGATTTTTTCCAATGGGAAGCTCAGGTTTTCGACT
GCTCGGACAACATGCGCATGTCCATGCTCCGCCTAGGTGGGCTCTTCCTC
GCCGTGGCCCTCTTTGGTGCCTGTACGCTCCCCAATGTCGAGGCCAACAA
GACGCGGCACGTCGACGGATTTCCCCGTGAGTGTCACCCTCACATATAAG
GGGAGGCAGTACAACCCCATGGTGCCCGTCACCCTGAAGTAGTGACGTGT
CGGAAGACCAATTGTTCCCTAGCCGAGCCCAGTACCCGGCCATAGTCGGG
AGTACCGGGCTCTTCCCCAGGAATCCTGTCAAGTACGATGATATCGAGTT
CGTGAATCCAGCAATCGACACTCCAGTGGGGTCGTCCACCTTTGCTTGCA
GCTATGTCGAAGAGCAGGATGATAATTTCCGTATTGGTGTTTGCAATGGG
AACATTGTGATCGCTGGCAATGCGCTTTACGTGTCCTTCACCATGGACCG
CGACCAAGGTCGCAAGGGTCCGCTATTCCAAGGCCAAGGCCTTCACCGCA
TGCTTCAGCAACATTAACTTCGAGGAGGACGAGGGAAGCGACGACGACAT
TGATTTTTTCCAATGGGAAGCTCAGGTTTTCGACTGCTCGGACAACATGC
GCATGTCCATGCTCCGCCTAGGTGGGCTCTTCCTCGCCGTGGCCCTCTTT
GGTGCCTGTACGCTCCCCAATGTCGAGGCCAACAAGACGCGGCACGTCGA
CGGATTTCCCCGTGAGTGTCACCCTCACATATAAGGGGAGGCAGTACAAC
CCCATGGTGCCCGTCACCCTGAAGTAGTGACGTGTCGGAAGACCAATTGT
TCCCTAGCCGAGCCCAGTACCCGGCCATAGTCGGGAGTACCGGGCTCTTC
CCCAGGAATCCTGTCAAGTACGATGATATCGAGTTCGTGAATCCAGCAAT
CGACACTCCAGTGGGGTCGTCCACCTTTGCTTGCAGCTATGTCGAAGAGC
AGGATGATAATTTCCGTATTGGTGTTTGCAATGGGAACATTGTGATCGCT
GGCAATGCGCTTTACGTGTCCTTCACCATGGACCGCGACCAAGGTCGCAA
GGGTCCGCTATTCCAAGGCCAAGGCCTTCACCGCATGCTTCAGCAACATT
AACTTCGAGGAGGACGAGGGAAGCGACGACGACATTGATTTTTTCCAATG
GGAAGCTCAGGTTTTCGACTGCTCGGACAACATGCGCATGTCCATGCTCC
GCCTAGGTGGGCTCTTCCTCGCCGTGGCCCTCTTTGGTGCCTGTACGCTC
CCCAATGTCGAGGCCAACAAGACGC
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Synonyms
Publications