jgi.p|Nanoce1779_2|641887, mRNA_8181 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641887
Unique NamemRNA_8181
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length288
Alignment locationscaffold_25:355565..355993 -

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Properties
Property NameValue
TranscriptId641973
TrackFilteredModels2
ProteinId641887
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:355565..355993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641887gene_8181Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641887mRNA_8181-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8181CDS_8181Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8181 ID=mRNA_8181|Name=jgi.p|Nanoce1779_2|641887|organism=Nannochloropsis oceanica|type=mRNA|length=288bp
ATGAAACGAGCCAATATCTTTACACGCGCCGTCCTTCTTGTCCTCGTGGC
ATTTGCGTCTGTCACTGCTGGCCAGGAGATGGTCACGCCCGAAGAGGGTC
CTGTCGCTGCCGTCACGGCGCCCTTTACGCCCGCTGAGAAGGTAGACACC
AACTTCCTTCGGGTGAGTAAGTTGAGCCGGACCTGTCTGCCTGTGGTGGA
TGTGCAGGGGAGGAGGAGGAAGGCAGGGATAGGATTGGCGCATAGAAAAT
ATAAGAGCGACGGCTTACGATGTGACCCAGCAATTTAA
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protein sequence of jgi.p|Nanoce1779_2|641887

>mRNA_8181-protein ID=mRNA_8181-protein|Name=jgi.p|Nanoce1779_2|641887|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MKRANIFTRAVLLVLVAFASVTAGQEMVTPEEGPVAAVTAPFTPAEKVDT
NFLRVSKLSRTCLPVVDVQGRRRKAGIGLAHRKYKSDGLRCDPAI*
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mRNA from alignment at scaffold_25:355565..355993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8181 ID=mRNA_8181|Name=jgi.p|Nanoce1779_2|641887|organism=Nannochloropsis oceanica|type=mRNA|length=429bp|location=Sequence derived from alignment at scaffold_25:355565..355993- (Nannochloropsis oceanica)
ATGAAACGAGCCAATATCTTTACACGCGCCGTCCTTCTTGTCCTCGTGGC
ATTTGCGTCTGTCACTGCTGGCCAGGTGAGTCTTCGAGACATTGTCTGGG
AGGGAAAGGCTGGCTGAGTGCCTTGGGGAAGGGCATGTGCATTTGTGAAG
GTTCTTCCGGGGGCTGGCGCGGTATTTCCTTAGGATATTTTAGTAAGCCC
TCAACAACATATACAGGAGATGGTCACGCCCGAAGAGGGTCCTGTCGCTG
CCGTCACGGCGCCCTTTACGCCCGCTGAGAAGGTAGACACCAACTTCCTT
CGGGTGAGTAAGTTGAGCCGGACCTGTCTGCCTGTGGTGGATGTGCAGGG
GAGGAGGAGGAAGGCAGGGATAGGATTGGCGCATAGAAAATATAAGAGCG
ACGGCTTACGATGTGACCCAGCAATTTAA
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Coding sequence (CDS) from alignment at scaffold_25:355565..355993-

>mRNA_8181 ID=mRNA_8181|Name=jgi.p|Nanoce1779_2|641887|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_25:355565..355993- (Nannochloropsis oceanica)
GAGATGGTCACGCCCGAAGAGGGTCCTGTCGCTGCCGTCACGGCGCCCTT
TACGCCCGCTGAGAAGGTAGACACCAACTTCCTTCGGGTGAGTAAGTTGA
GCCGGACCTGTCTGCCTGTGGTGGATGTGCAGGGGAGGAGGAGGAAGGCA
GGGATAGGATTGGCGCATAGAAAATATAAGAGCGACGGCTTACGATGTGA
CCCAGCAATTTAAATGAAACGAGCCAATATCTTTACACGCGCCGTCCTTC
TTGTCCTCGTGGCATTTGCGTCTGTCACTGCTGGCCAGGAGATGGTCACG
CCCGAAGAGGGTCCTGTCGCTGCCGTCACGGCGCCCTTTACGCCCGCTGA
GAAGGTAGACACCAACTTCCTTCGGGTGAGTAAGTTGAGCCGGACCTGTC
TGCCTGTGGTGGATGTGCAGGGGAGGAGGAGGAAGGCAGGGATAGGATTG
GCGCATAGAAAATATAAGAGCGACGGCTTACGATGTGACCCAGCAATTTA
AATGAAACGAGCCAATATCTTTACACGCGCCGTCCTTCTTGTCCTCGTGG
CATTTGCGTCTGTCACTGCTGGCCAG
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Synonyms
Publications