jgi.p|Nanoce1779_2|602750, mRNA_8180 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602750
Unique NamemRNA_8180
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length568
Alignment locationscaffold_25:353696..354858 +

Link to JBrowse

Properties
Property NameValue
TranscriptId602836
TrackFilteredModels2
ProteinId602750
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:353696..354858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602750gene_8180Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602750mRNA_8180-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8180CDS_8180Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8180 ID=mRNA_8180|Name=jgi.p|Nanoce1779_2|602750|organism=Nannochloropsis oceanica|type=mRNA|length=568bp
CAGCAGCAGCAGCAGCAGCTATCGGCAGCGATGGGTGAGAGCAACATCCT
CAAGGGCCGGCACTACATGCAGCTCTTTATCCTGGCCCTCCTATTCATGT
TCGCCATTTTCACCCGCAAGAGCATATGGATCTACTATACGGTACTGATC
ATCTTCGCAGCCGTGCTTTTTATCGTGGACATCCTCTTCCAAGATTTTCA
GTTCGTCTTCGACCCCGATCCAAATAACTGGCGCCGCAAGACGGATCCTC
AATACTAGACCAGGGAGAAACGAGCAGGCAGAAAGGGAGAGAGGGGGAAG
AGGATAGAAGGCGAGGATAGGACTAAAACGAGGAGGTGGGTGCTGCTGTC
GCTGACAAGGGTAAAAAGGAGGAAGAAATAGGGGGGGTGTATGTATGTAT
GTGGGGAGGGAGGGATGGAAGGAGTGAGTGAGTGAGTCCTGGATTTCATG
GGTGGGACTCGGAGTTGGAGGAATCAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCGGCAACAGAAGGGTGGAGATGGATTCACTGACAGGGCGGGA
ATTGCCAAAAAGGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|602750

>mRNA_8180-protein ID=mRNA_8180-protein|Name=jgi.p|Nanoce1779_2|602750|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MGESNILKGRHYMQLFILALLFMFAIFTRKSIWIYYTVLIIFAAVLFIVD
ILFQDFQFVFDPDPNNWRRKTDPQY*
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mRNA from alignment at scaffold_25:353696..354858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8180 ID=mRNA_8180|Name=jgi.p|Nanoce1779_2|602750|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at scaffold_25:353696..354858+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCTATCGGCAGCGATGGGTGAGAGCAACATCCT
CAAGGGCCGGCACTACATGCAGCTCTTTATCCTGGCCCTCCTATTCATGT
TCGCCATTTTCACCCGCAAGAGCATATGGATCTACTATGTGCGTTGTCGC
CGCCCCATCCCCCGCCCTTTCCCTCTCATTTCTTGTCCACCGGTCCCTCT
CTTGTCCATGTCTTCATTCTATTGCCACTCTTCTTCCTGCTGAGGCAGAG
GACGGACGGGGTGGTGGATTTTTTTTGTGTGGTCTTGTGTGAGGGGTCAG
ACGAAGAAGGGGGTGTGCGTGAATCCTCCGTCTCGTGCACCCTTATGTCC
CCGCGCCCTGCCCTCTAAGTCCTATCGTGCTTCCCGCCCGCTCTCCCTCC
CGCCCATTCTTCCAACATTCACAGACGGCTGTGGTCGTGGTCATAACCAC
CGTGGACCCTGTGCCTTCTCTCATTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCTTCCCTCCTCCCTCCCTCCCTCTCTCCCCCTCACCAAT
CACAGACGGTACTGATCATCTTCGCAGCCGTGCTTTTTATCGTGGACATC
CTCTTCCAAGATTTTCAGTTCGTCTTCGACCCCGATCCAAATGTGAGGAC
ACTCCCTCCCGCCCTCCCTCTCTCCTTCCTTCCTTCCCTCCCTCCCTCCC
ACTGGTCTGTGTGTCCCATCTGGCTCGCTATCCTTGATATTTTCCCCACT
CTAGATGTACTCATCCCTCCCTTCAATCGCCCTCCCTCCATCCTCCCTCC
CTTTCTCCCCCCAAACCCAGAACTGGCGCCGCAAGACGGATCCTCAATAC
TAGACCAGGGAGAAACGAGCAGGCAGAAAGGGAGAGAGGGGGAAGAGGAT
AGAAGGCGAGGATAGGACTAAAACGAGGAGGTGGGTGCTGCTGTCGCTGA
CAAGGGTAAAAAGGAGGAAGAAATAGGGGGGGTGTATGTATGTATGTGGG
GAGGGAGGGATGGAAGGAGTGAGTGAGTGAGTCCTGGATTTCATGGGTGG
GACTCGGAGTTGGAGGAATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCGGCAACAGAAGGGTGGAGATGGATTCACTGACAGGGCGGGAATTGC
CAAAAAGGGAAAA
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Coding sequence (CDS) from alignment at scaffold_25:353696..354858+

>mRNA_8180 ID=mRNA_8180|Name=jgi.p|Nanoce1779_2|602750|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_25:353696..354858+ (Nannochloropsis oceanica)
ATGGGTGAGAGCAACATCCTCAAGGGCCGGCACTACATGCAGCTCTTTAT
CCTGGCCCTCCTATTCATGTTCGCCATTTTCACCCGCAAGAGCATATGGA
TCTACTATACGGTACTGATCATCTTCGCAGCCGTGCTTTTTATCGTGGAC
ATCCTCTTCCAAGATTTTCAGTTCGTCTTCGACCCCGATCCAAATAACTG
GCGCCGCAAGACGGATCCTCAATACTAGATGGGTGAGAGCAACATCCTCA
AGGGCCGGCACTACATGCAGCTCTTTATCCTGGCCCTCCTATTCATGTTC
GCCATTTTCACCCGCAAGAGCATATGGATCTACTATACGGTACTGATCAT
CTTCGCAGCCGTGCTTTTTATCGTGGACATCCTCTTCCAAGATTTTCAGT
TCGTCTTCGACCCCGATCCAAATAACTGGCGCCGCAAGACGGATCCTCAA
TACTAGATGGGTGAGAGCAACATCCTCAAGGGCCGGCACTACATGCAGCT
CTTTATCCTGGCCCTCCTATTCATGTTCGCCATTTTCACCCGCAAGAGCA
TATGGATCTACTATACGGTACTGATCATCTTCGCAGCCGTGCTTTTTATC
GTGGACATCCTCTTCCAAGATTTTCAGTTCGTCTTCGACCCCGATCCAAA
TAACTGGCGCCGCAAGACGGATCCTCAATACTAG
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Synonyms
Publications