jgi.p|Nanoce1779_2|602745, mRNA_8179 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602745
Unique Name	mRNA_8179
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	978
Alignment location	scaffold_25:350653..352430 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602831
Track	FilteredModels2
ProteinId	602745

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:350653..352430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602745	gene_8179	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602745	mRNA_8179-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8179	CDS_8179	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:350653..352430+
coding sequence from alignment at scaffold_25:350653..352430+

mRNA sequence

>mRNA_8179 ID=mRNA_8179|Name=jgi.p|Nanoce1779_2|602745|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
ACAGGCACGCAACCATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCT
CTGGCCCCCAAGAAGCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTC
TGTGGAAATGATGCATCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGG
CACGGTTTCATTTGCTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCG
GCATTTTTTTATCCCGAGATCTGCCAAACGCACTGGGCATCCCCCTTATG
CGACCTCTCCCTTGCTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTT
CCTCGGTAGCCGCCACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATC
ACGGCCTTGACTTCGTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAG
GGAGGAGGAAGGGGAAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGA
CCAAATCGGTTCGGGGGCTTTTTGAGGCATTCATGAAGGCCACGTTTGAC
CTGGGGAGGAAATTGGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTT
CCAAGCCTACCTCGAAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGA
TGGTGAGGACGGAAAGGAGGAAGGGAAGGAGGAAGGTGGTGGGAGATGCC
TGGGCTGTAGTGATGATGATTCAACCGGACTCTCCCTCCCTGCCTCCCTC
CCTCCTTCCCTCCCTCCCTCCAGCGCGCGTGCCTCTTCGACTTCATCCGT
CACACCGAAGAGCTGAGCATGCATTACGACGTCTGGAACGGCGGCTTCGT
CGAGTGGCCTTCTGTGCCTTGGCGTCGAAGTGCCATTGATTTTGTCTCTG
ATTTCTACGTCGCCAAGTCCGTCCTTTCCCCCTCCCGCTCCCTCCCGCCC
TCCCTCCCTCCCTCTACCACCTCTTCTTCTACGCGCGACAAACAACAACA
ACAACAACAACAACAACAACAACAACAA

protein sequence of jgi.p|Nanoce1779_2|602745

>mRNA_8179-protein ID=mRNA_8179-protein|Name=jgi.p|Nanoce1779_2|602745|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MVVVDSASAVHSLAPKKLPLGPTGWNHLSVEMMHQIARFCQLQDVARFHL
LCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSWRMLFLSSVAA
TAPISELLDQGITALTSLKEREEGVEEGREEEGEEVEGEVKVLSQTKSVR
GLFEAFMKATFDLGRKLELGKVSPHSRAFQAYLEATGRILRTSALMVRTE
RRKGRRKVVGDAWAVVMMIQPDSPSLPPSLLPSLPPARVPLRLHPSHRRA
EHALRRLERRLRRVAFCALASKCH*

mRNA from alignment at scaffold_25:350653..352430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8179 ID=mRNA_8179|Name=jgi.p|Nanoce1779_2|602745|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_25:350653..352430+ (Nannochloropsis oceanica)
ACAGGCACGCAACCATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCT
CTGGCCCCCAAGAAGCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTC
TGTGGAAATGATGCATCAGGTGAGAGCAGAGGGGGGAACTGCGGACGGAG
GGGAATTCTAGGAGGGTGAGACAAGCTGAAAGGAAAATGACGGAGGGCGG
TAGAAAGTGCTGTTGGTTTTGGGGACTGTGAGAAGTAGTTGCTGCAACGC
AGTAGGGATGAAGAGGAGGAGGAGGAGGGGGGGGGGTTGGGAAAGGAGGA
GAAGGAAATGGAGGAGGAGGAGGAGGAGGAGAAGGAGGTGTAGGACGACG
ATGGAGCAACAAGAGGAGGATGATGCTCACATCAACCTCTCCCACTCACC
TTCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTG
CTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCC
CGAGGTAAGGAAAGCAAGGGAATGAAAGAGGATGAATGGGCATTGGAAGG
CTTTATGGTTCAAGGAGAGTATTATTTAAACATTTTGGTGGTAAACTGCA
CTCTTACACACCCAAAGGGAGGCAGTACAGAAGTATGAAACTTTATCAAT
CGTAATCAGTCAAGTATCTCTATCCTCCTTATCTCAAACCAGATCGTAAT
CGGTGAAGTTTCTCCACTCTCTAACCTTTATTTCTCCTAAAATCTCTATA
CCCCCCATATCTCCAAAAACCAGATCTGCCAAACGCACTGGGCATCCCCC
TTATGCGACCTCTCCCTTGCTGCTTACAGAGGCTCCTGGCGGATGCTCTT
CCTTTCCTCGGTAGCCGCCACTGCGCCCATCTCCGAATTGCTGGATCAGG
GCATCACGGCCTTGACTTCGTTGAAAGAGAGGGAGGAGGGAGTGGAGGAG
GGCAGGGAGGAGGAAGGGGAAGAGGTGGAGGGCGAGGTCAAGGTGCTCTC
GCAGACCAAATCGGTTCGGGGGCTTTTTGAGGTAGGGAGGGAGGGAGGGA
GGGAGGGACGAATGGAGGAAGGGAGGGAGGTATAGATAGACAGGAAAGTG
CGTTGCGAATGTAGGTGTATTCACTACCCTCCCTCCTTCCTCCCTCCCTC
CCTTCATCGGGACAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAA
ATTGGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACC
TCGAAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGGTGAGGACG
GAAAGGAGGAAGGGAAGGAGGAAGGTGGTGGGAGATGCCTGGGCTGTAGT
GATGATGATTCAACCGGACTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCT
CCCTCCCTCCAGCGCGCGTGCCTCTTCGACTTCATCCGTCACACCGAAGA
GCTGAGCATGCATTACGACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTT
CTGTGCCTTGGTACGGACGTGTCCTCCCCCCCTCCCCCTCCCTCCTCCAT
CTTCCTGCCCCCTCTTATCGTCGTCTTACTCCCCCTTCTTCCCTCCCCCC
CTCCTTCCCTCCCTCCCGAAGGCGTCGAAGTGCCATTGATTTTGTCTCTG
ATTTCTACGTCGCCAAGTCCGTCCTTTCCCCCTCCCGCTCCCTCCCGCCC
TCCCTCCCTCCCTCTACCACCTCTTCTTCTACGCGCGACAAACAACAACA
ACAACAACAACAACAACAACAACAACAA

Coding sequence (CDS) from alignment at scaffold_25:350653..352430+

>mRNA_8179 ID=mRNA_8179|Name=jgi.p|Nanoce1779_2|602745|organism=Nannochloropsis oceanica|type=CDS|length=4125bp|location=Sequence derived from alignment at scaffold_25:350653..352430+ (Nannochloropsis oceanica)
ATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAA
GCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGC
ATCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTG
CTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCC
CGAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCTTG
CTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCGCC
ACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACTTC
GTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGGGG
AAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTCGG
GGGCTTTTTGAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATT
GGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCG
AAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGGTGAGGACGGAA
AGGAGGAAGGGAAGGAGGAAGGTGGTGGGAGATGCCTGGGCTGTAGTGAT
GATGATTCAACCGGACTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCTCCC
TCCCTCCAGCGCGCGTGCCTCTTCGACTTCATCCGTCACACCGAAGAGCT
GAGCATGCATTACGACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTTCTG
TGCCTTGGCGTCGAAGTGCCATTGAATGGTAGTCGTGGATTCTGCATCTG
CGGTGCATTCTCTGGCCCCCAAGAAGCTGCCGCTGGGGCCGACAGGCTGG
AATCACTTGTCTGTGGAAATGATGCATCAGATCGCTCGTTTTTGCCAGTT
ACAAGACGTGGCACGGTTTCATTTGCTGTGCCGGGCCTGGTGCGAGGGCT
TGGAGCAATCGGCATTTTTTTATCCCGAGATCTGCCAAACGCACTGGGCA
TCCCCCTTATGCGACCTCTCCCTTGCTGCTTACAGAGGCTCCTGGCGGAT
GCTCTTCCTTTCCTCGGTAGCCGCCACTGCGCCCATCTCCGAATTGCTGG
ATCAGGGCATCACGGCCTTGACTTCGTTGAAAGAGAGGGAGGAGGGAGTG
GAGGAGGGCAGGGAGGAGGAAGGGGAAGAGGTGGAGGGCGAGGTCAAGGT
GCTCTCGCAGACCAAATCGGTTCGGGGGCTTTTTGAGGCATTCATGAAGG
CCACGTTTGACCTGGGGAGGAAATTGGAGCTCGGGAAAGTCTCCCCGCAC
AGCCGAGCCTTCCAAGCCTACCTCGAAGCCACGGGGAGGATTCTACGGAC
GTCGGCCTTGATGGTGAGGACGGAAAGGAGGAAGGGAAGGAGGAAGGTGG
TGGGAGATGCCTGGGCTGTAGTGATGATGATTCAACCGGACTCTCCCTCC
CTGCCTCCCTCCCTCCTTCCCTCCCTCCCTCCAGCGCGCGTGCCTCTTCG
ACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACGACGTCTGGAAC
GGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGGCGTCGAAGTGCCATTGA
ATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAA
GCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGC
ATCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTG
CTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCC
CGAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCTTG
CTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCGCC
ACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACTTC
GTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGGGG
AAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTCGG
GGGCTTTTTGAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATT
GGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCG
AAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGGTGAGGACGGAA
AGGAGGAAGGGAAGGAGGAAGGTGGTGGGAGATGCCTGGGCTGTAGTGAT
GATGATTCAACCGGACTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCTCCC
TCCCTCCAGCGCGCGTGCCTCTTCGACTTCATCCGTCACACCGAAGAGCT
GAGCATGCATTACGACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTTCTG
TGCCTTGGCGTCGAAGTGCCATTGAATGGTAGTCGTGGATTCTGCATCTG
CGGTGCATTCTCTGGCCCCCAAGAAGCTGCCGCTGGGGCCGACAGGCTGG
AATCACTTGTCTGTGGAAATGATGCATCAGATCGCTCGTTTTTGCCAGTT
ACAAGACGTGGCACGGTTTCATTTGCTGTGCCGGGCCTGGTGCGAGGGCT
TGGAGCAATCGGCATTTTTTTATCCCGAGATCTGCCAAACGCACTGGGCA
TCCCCCTTATGCGACCTCTCCCTTGCTGCTTACAGAGGCTCCTGGCGGAT
GCTCTTCCTTTCCTCGGTAGCCGCCACTGCGCCCATCTCCGAATTGCTGG
ATCAGGGCATCACGGCCTTGACTTCGTTGAAAGAGAGGGAGGAGGGAGTG
GAGGAGGGCAGGGAGGAGGAAGGGGAAGAGGTGGAGGGCGAGGTCAAGGT
GCTCTCGCAGACCAAATCGGTTCGGGGGCTTTTTGAGGCATTCATGAAGG
CCACGTTTGACCTGGGGAGGAAATTGGAGCTCGGGAAAGTCTCCCCGCAC
AGCCGAGCCTTCCAAGCCTACCTCGAAGCCACGGGGAGGATTCTACGGAC
GTCGGCCTTGATGGTGAGGACGGAAAGGAGGAAGGGAAGGAGGAAGGTGG
TGGGAGATGCCTGGGCTGTAGTGATGATGATTCAACCGGACTCTCCCTCC
CTGCCTCCCTCCCTCCTTCCCTCCCTCCCTCCAGCGCGCGTGCCTCTTCG
ACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACGACGTCTGGAAC
GGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGGCGTCGAAGTGCCATTGA
ATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAA
GCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGC
ATCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTG
CTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCC
CGAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCTTG
CTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCGCC
ACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACTTC
GTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGGGG
AAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTCGG
GGGCTTTTTGAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATT
GGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCG
AAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGGTGAGGACGGAA
AGGAGGAAGGGAAGGAGGAAGGTGGTGGGAGATGCCTGGGCTGTAGTGAT
GATGATTCAACCGGACTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCTCCC
TCCCTCCAGCGCGCGTGCCTCTTCGACTTCATCCGTCACACCGAAGAGCT
GAGCATGCATTACGACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTTCTG
TGCCTTGGCGTCGAAGTGCCATTGA

Synonyms

Publications