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Properties
| Property Name | Value |
|---|
| TranscriptId | 204192 |
| Track | FilteredModels2 |
| ProteinId | 204106 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:342665..344874 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8176 ID=mRNA_8176|Name=jgi.p|Nanoce1779_2|204106|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
AGCCATTGGACATTCTTTGATCATTGGTCAAAATCTTTTTATGTCCGTGG
TGCTCACCCCTCTCCCTTCTCTCCTTCAACCTCAACACAGACATCCTGCC
TCTGGGGAGGGGTCTCCCCAACACGCGGCAACCCCCACGACAACAGCAGC
AAGTGTCACCAAGCGTTGACGTGTTGCAATGACCATTGCCGGTCCTCCAC
CACTTCGTCCTCCTCGACCACTTCCTCTTGCCATCTCTCATCTCCAAACC
CATGTAGATCAAATCAAGCAGCTTTCCTCGCCTCGTGCTCCGGCCCCCCC
TTCCCCCCCTCTCTCTTTCCTGTCTCCTCTCTCCATGGGACATCGGTCCC
ATCATTCTACAATGATATCAGCGGCAGCGGCAGCACAGGAAGGAGAAGGA
GGAGGCGGAGGAGGGGGAGATGGCGGAAGAGGAGGAGCAGGAGGAGGGGA
AGGAAGCAGCATAAGCAGCACCAGCAGGAGGGAAGGAGTCCGGGACGCCA
TGCATGAAATTGAGGATATGTACTCGTTTCCTCCGCCTCCTGTCACCCCT
TCCTTTGCGCTCTACAACCAAAGCAACGGCTTCGGCAGCAGCACCGGCAG
CAACACCGGTACCAGCACCAGCAGCACCAGCACCGGCAGCACCAGCAGCA
CCAGCACCAGCACCAGCAGCACCAGCATCAGCTCCAGCAGCAGCACCAGC
AATACCAGCACCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAG
CACCCGTAGCAGCAGCCACAAACGGGCGAGGAGCATCCGGACCTTTAAGG
CCGGCGACTCGGTGGATGCGATGGATCTGGAAGGGGTGTGGCATGAAGGC
ACGGTGAAGGAGGTGGATGGCGTGCAGGGCTACCGTATCCACTTCCTCGG
CTGGAGCGGACGGTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGGATCC
AACCCTCTTACTCCAAGGTCCGGAATTGGCGCGTGTGTCTCCAACCGGGA
GATGCAGTAGAAGTGAGATCCGCCGTCTTCCAAGATCGATGGCTGAGTGG
CACGGTGGTGGATGTGAGGAGGGAGGAGGGTTTGGTTCGGTGCGAGTACA
GCCATGACTCTCGTTGGATCGATCCGACGGGGGAAGAAGTGTGCTTGCCC
AACACACACTTCTCGCGAGAGCTGGATCAGGCTATGCCGCAGGTAAGGGA
GGAGGGAGGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGAGGGAAGGGATG
ACCGGAGGAACTTAGTGTCATGTCTGTTCACCCTCCCTCCTTCCCTCTTT
CTCTTCGTCCCTCCTCCCCTACTCCCCTCTCTCCCTCCCCCTCTTTACAG
AAAATGGAGCAAATATTCCGCGAAGGCCGTATTCACGTGGAGTGCCGGGC
GGGTCATGTGGACCGGGTCCAGGCGCTGGTGAGGGAGGAGGCTTCCCTCC
TCCATGCAAAGGTTCGTTGTAGTACGTTTGCATCGCTTTTTTAACATTAT
AGGTAGATAGATATATAGATGCAAAGGTTCGTCGTAGCCTACTACCTCTG
TAGCACGTTTGCATCGCTTTTTTAATATTATAGATGGATAGATATATATA
TATAGAGAGGAAGAGATGGATGGATAGATAAGTAGATGGTGCATAGATAG
ATTATGTGCATGCGTTCCTCTATATGACGGGTAGGTCCGTCTAAGTTCCC
CCCCACCTCCTCCCATCAGTAGCCCACCCTCCTTCAGGAGCTCGACACTG
CTTCTCACCCTCCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|204106 >mRNA_8176-protein ID=mRNA_8176-protein|Name=jgi.p|Nanoce1779_2|204106|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MTIAGPPPLRPPRPLPLAISHLQTHVDQIKQLSSPRAPAPPSPPLSFLSP
LSMGHRSHHSTMISAAAAAQEGEGGGGGGGDGGRGGAGGGEGSSISSTSR
REGVRDAMHEIEDMYSFPPPPVTPSFALYNQSNGFGSSTGSNTGTSTSST
STGSTSSTSTSTSSTSISSSSSTSNTSTSTSSTSSTSSTSSTRSSSHKRA
RSIRTFKAGDSVDAMDLEGVWHEGTVKEVDGVQGYRIHFLGWSGRWDEWV
EAGSERIQPSYSKVRNWRVCLQPGDAVEVRSAVFQDRWLSGTVVDVRREE
GLVRCEYSHDSRWIDPTGEEVCLPNTHFSRELDQAMPQVREEGGREGGRE
GGREGRDDRRNLVSCLFTLPPSLFLFVPPPLLPSLPPPLYRKWSKYSAKA
VFTWSAGRVMWTGSRRW* back to topmRNA from alignment at scaffold_25:342665..344874- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8176 ID=mRNA_8176|Name=jgi.p|Nanoce1779_2|204106|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at scaffold_25:342665..344874- (Nannochloropsis oceanica)
AGCCATTGGACATTCTTTGATCATTGGTCAAAATCTTTTTATGTCCGTGG
TGCTCACCCCTCTCCCTTCTCTCCTTCAACCTCAACACAGACATCCTGCC
TCTGGGGAGGGGTCTCCCCAACACGCGGCAACCCCCACGACAACAGCAGC
AAGTGTCACCAAGCGTTGACGTGTTGCAATGACCATTGCCGGTCCTCCAC
CACTTCGTCCTCCTCGACCACTTCCTCTTGCCATCTCTCATCTCCAAACC
CATGTAGATCAAATCAAGCAGCTTTCCTCGCCTCGTGCTCCGGCCCCCCC
TTCCCCCCCTCTCTCTTTCCTGTCTCCTCTCTCCATGGGACATCGGTCCC
ATCATTCTACAATGATATCAGCGGCAGCGGCAGCACAGGAAGGAGAAGGA
GGAGGCGGAGGAGGGGGAGATGGCGGAAGAGGAGGAGCAGGAGGAGGGGA
AGGAAGCAGCATAAGCAGCACCAGCAGGAGGGAAGGAGTCCGGGACGCCA
TGCATGAAATTGAGGATATGTACTCGTTTCCTCCGCCTCCTGTCACCCCT
TCCTTTGCGCTCTACAACCAAAGCAACGGCTTCGGCAGCAGCACCGGCAG
CAACACCGGTACCAGCACCAGCAGCACCAGCACCGGCAGCACCAGCAGCA
CCAGCACCAGCACCAGCAGCACCAGCATCAGCTCCAGCAGCAGCACCAGC
AATACCAGCACCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAG
CACCCGTAGCAGCAGCCACAAACGGGCGAGGAGCATCCGGACCTTTAAGG
CCGGCGACTCGGTGGATGCGATGGATCTGGAAGGGGTGTGGCATGAAGGC
ACGGTGAAGGAGGTGGATGGCGTGCAGGTATAAATGTGCCCTCCTTCCCT
CCTTCATTCATCCCTCCCTCAAACGGGCCAAGGTCCTATTACTCATCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCTCCACCCAGGGCTACCGTATCCACTTCC
TCGGCTGGAGCGGACGGTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGG
ATCCAACCCTCTTACTCCAAGGTAGGCTTTCCACAGGCCCCTCCCTCCTT
CCCTTCCTCCCTCCCTCATTCCTTCGAAGAAACGTTGACACCTTCTTCCC
TTTTTCCCTTCTTCCCTCCTTCCGTACCTCAGGTCCGGAATTGGCGCGTG
TGTCTCCAACCGGGAGATGCAGTAGAAGTGAGATCCGCCGTCTTCCAAGA
TCGATGGCTGAGTGGCACGGTGGTGGATGTGAGGAGGGAGGAGGGTTTGG
TTCGGTGCGAGTACAGGTGCGTGCCGAGGGAAGGTGGGAGGAAGGGGAAG
GAGAGTGGGAGACAAGGGAGGTAGAATGGGGAGGGAAGGAGGGAGGGAGG
GAAGGCGTCTCTTAAAGTATCGGTCGTAAACTTGAGAATAATGTCTTCAC
TTATTCTCTCTCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCAGCCATGA
CTCTCGTTGGATCGATCCGACGGGGGAAGAAGTGTGCTTGCCCAACACAC
ACTTCTCGCGAGAGCTGGATCAGGCTATGCCGCAGGTAAGGGAGGAGGGA
GGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGAGGGAAGGGATGACCGGAG
GAACTTAGTGTCATGTCTGTTCACCCTCCCTCCTTCCCTCTTTCTCTTCG
TCCCTCCTCCCCTACTCCCCTCTCTCCCTCCCCCTCTTTACAGAAAATGG
AGCAAATATTCCGCGAAGGCCGTATTCACGTGGAGTGCCGGGCGGGTCAT
GTGGACCGGGTCCAGGCGCTGGTGAGGGAGGAGGCTTCCCTCCTCCATGC
AAAGGTTCGTTGTAGTACGTTTGCATCGCTTTTTTAACATTATAGGTAGA
TAGATATATAGATGCAAAGGTTCGTCGTAGCCTACTACCTCTGTAGCACG
TTTGCATCGCTTTTTTAATATTATAGATGGATAGATATATATATATAGAG
AGGAAGAGATGGATGGATAGATAAGTAGATGGTGCATAGATAGATTATGT
GCATGCGTTCCTCTATATGACGGGTAGGTCCGTCTAAGTTCCCCCCCACC
TCCTCCCATCAGTAGCCCACCCTCCTTCAGGAGCTCGACACTGCTTCTCA
CCCTCCCTCC back to topCoding sequence (CDS) from alignment at scaffold_25:342665..344874- >mRNA_8176 ID=mRNA_8176|Name=jgi.p|Nanoce1779_2|204106|organism=Nannochloropsis oceanica|type=CDS|length=5016bp|location=Sequence derived from alignment at scaffold_25:342665..344874- (Nannochloropsis oceanica)
CCATGACTCTCGTTGGATCGATCCGACGGGGGAAGAAGTGTGCTTGCCCA
ACACACACTTCTCGCGAGAGCTGGATCAGGCTATGCCGCAGGTAAGGGAG
GAGGGAGGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGAGGGAAGGGATGA
CCGGAGGAACTTAGTGTCATGTCTGTTCACCCTCCCTCCTTCCCTCTTTC
TCTTCGTCCCTCCTCCCCTACTCCCCTCTCTCCCTCCCCCTCTTTACAGA
AAATGGAGCAAATATTCCGCGAAGGCCGTATTCACGTGGAGTGCCGGGCG
GGTCATGTGGACCGGGTCCAGGCGCTGGTGAGTCCGGAATTGGCGCGTGT
GTCTCCAACCGGGAGATGCAGTAGAAGTGAGATCCGCCGTCTTCCAAGAT
CGATGGCTGAGTGGCACGGTGGTGGATGTGAGGAGGGAGGAGGGTTTGGT
TCGGTGCGAGTACAGGGCTACCGTATCCACTTCCTCGGCTGGAGCGGACG
GTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGGATCCAACCCTCTTACT
CCAAGATGACCATTGCCGGTCCTCCACCACTTCGTCCTCCTCGACCACTT
CCTCTTGCCATCTCTCATCTCCAAACCCATGTAGATCAAATCAAGCAGCT
TTCCTCGCCTCGTGCTCCGGCCCCCCCTTCCCCCCCTCTCTCTTTCCTGT
CTCCTCTCTCCATGGGACATCGGTCCCATCATTCTACAATGATATCAGCG
GCAGCGGCAGCACAGGAAGGAGAAGGAGGAGGCGGAGGAGGGGGAGATGG
CGGAAGAGGAGGAGCAGGAGGAGGGGAAGGAAGCAGCATAAGCAGCACCA
GCAGGAGGGAAGGAGTCCGGGACGCCATGCATGAAATTGAGGATATGTAC
TCGTTTCCTCCGCCTCCTGTCACCCCTTCCTTTGCGCTCTACAACCAAAG
CAACGGCTTCGGCAGCAGCACCGGCAGCAACACCGGTACCAGCACCAGCA
GCACCAGCACCGGCAGCACCAGCAGCACCAGCACCAGCACCAGCAGCACC
AGCATCAGCTCCAGCAGCAGCACCAGCAATACCAGCACCAGCACCAGCAG
CACCAGCAGCACCAGCAGCACCAGCAGCACCCGTAGCAGCAGCCACAAAC
GGGCGAGGAGCATCCGGACCTTTAAGGCCGGCGACTCGGTGGATGCGATG
GATCTGGAAGGGGTGTGGCATGAAGGCACGGTGAAGGAGGTGGATGGCGT
GCAGCCATGACTCTCGTTGGATCGATCCGACGGGGGAAGAAGTGTGCTTG
CCCAACACACACTTCTCGCGAGAGCTGGATCAGGCTATGCCGCAGGTAAG
GGAGGAGGGAGGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGAGGGAAGGG
ATGACCGGAGGAACTTAGTGTCATGTCTGTTCACCCTCCCTCCTTCCCTC
TTTCTCTTCGTCCCTCCTCCCCTACTCCCCTCTCTCCCTCCCCCTCTTTA
CAGAAAATGGAGCAAATATTCCGCGAAGGCCGTATTCACGTGGAGTGCCG
GGCGGGTCATGTGGACCGGGTCCAGGCGCTGGTGAGTCCGGAATTGGCGC
GTGTGTCTCCAACCGGGAGATGCAGTAGAAGTGAGATCCGCCGTCTTCCA
AGATCGATGGCTGAGTGGCACGGTGGTGGATGTGAGGAGGGAGGAGGGTT
TGGTTCGGTGCGAGTACAGGGCTACCGTATCCACTTCCTCGGCTGGAGCG
GACGGTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGGATCCAACCCTCT
TACTCCAAGATGACCATTGCCGGTCCTCCACCACTTCGTCCTCCTCGACC
ACTTCCTCTTGCCATCTCTCATCTCCAAACCCATGTAGATCAAATCAAGC
AGCTTTCCTCGCCTCGTGCTCCGGCCCCCCCTTCCCCCCCTCTCTCTTTC
CTGTCTCCTCTCTCCATGGGACATCGGTCCCATCATTCTACAATGATATC
AGCGGCAGCGGCAGCACAGGAAGGAGAAGGAGGAGGCGGAGGAGGGGGAG
ATGGCGGAAGAGGAGGAGCAGGAGGAGGGGAAGGAAGCAGCATAAGCAGC
ACCAGCAGGAGGGAAGGAGTCCGGGACGCCATGCATGAAATTGAGGATAT
GTACTCGTTTCCTCCGCCTCCTGTCACCCCTTCCTTTGCGCTCTACAACC
AAAGCAACGGCTTCGGCAGCAGCACCGGCAGCAACACCGGTACCAGCACC
AGCAGCACCAGCACCGGCAGCACCAGCAGCACCAGCACCAGCACCAGCAG
CACCAGCATCAGCTCCAGCAGCAGCACCAGCAATACCAGCACCAGCACCA
GCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCCGTAGCAGCAGCCAC
AAACGGGCGAGGAGCATCCGGACCTTTAAGGCCGGCGACTCGGTGGATGC
GATGGATCTGGAAGGGGTGTGGCATGAAGGCACGGTGAAGGAGGTGGATG
GCGTGCAGCCATGACTCTCGTTGGATCGATCCGACGGGGGAAGAAGTGTG
CTTGCCCAACACACACTTCTCGCGAGAGCTGGATCAGGCTATGCCGCAGG
TAAGGGAGGAGGGAGGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGAGGGA
AGGGATGACCGGAGGAACTTAGTGTCATGTCTGTTCACCCTCCCTCCTTC
CCTCTTTCTCTTCGTCCCTCCTCCCCTACTCCCCTCTCTCCCTCCCCCTC
TTTACAGAAAATGGAGCAAATATTCCGCGAAGGCCGTATTCACGTGGAGT
GCCGGGCGGGTCATGTGGACCGGGTCCAGGCGCTGGTGAGTCCGGAATTG
GCGCGTGTGTCTCCAACCGGGAGATGCAGTAGAAGTGAGATCCGCCGTCT
TCCAAGATCGATGGCTGAGTGGCACGGTGGTGGATGTGAGGAGGGAGGAG
GGTTTGGTTCGGTGCGAGTACAGGGCTACCGTATCCACTTCCTCGGCTGG
AGCGGACGGTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGGATCCAACC
CTCTTACTCCAAGATGACCATTGCCGGTCCTCCACCACTTCGTCCTCCTC
GACCACTTCCTCTTGCCATCTCTCATCTCCAAACCCATGTAGATCAAATC
AAGCAGCTTTCCTCGCCTCGTGCTCCGGCCCCCCCTTCCCCCCCTCTCTC
TTTCCTGTCTCCTCTCTCCATGGGACATCGGTCCCATCATTCTACAATGA
TATCAGCGGCAGCGGCAGCACAGGAAGGAGAAGGAGGAGGCGGAGGAGGG
GGAGATGGCGGAAGAGGAGGAGCAGGAGGAGGGGAAGGAAGCAGCATAAG
CAGCACCAGCAGGAGGGAAGGAGTCCGGGACGCCATGCATGAAATTGAGG
ATATGTACTCGTTTCCTCCGCCTCCTGTCACCCCTTCCTTTGCGCTCTAC
AACCAAAGCAACGGCTTCGGCAGCAGCACCGGCAGCAACACCGGTACCAG
CACCAGCAGCACCAGCACCGGCAGCACCAGCAGCACCAGCACCAGCACCA
GCAGCACCAGCATCAGCTCCAGCAGCAGCACCAGCAATACCAGCACCAGC
ACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCCGTAGCAGCAG
CCACAAACGGGCGAGGAGCATCCGGACCTTTAAGGCCGGCGACTCGGTGG
ATGCGATGGATCTGGAAGGGGTGTGGCATGAAGGCACGGTGAAGGAGGTG
GATGGCGTGCAGCCATGACTCTCGTTGGATCGATCCGACGGGGGAAGAAG
TGTGCTTGCCCAACACACACTTCTCGCGAGAGCTGGATCAGGCTATGCCG
CAGGTAAGGGAGGAGGGAGGAAGGGAGGGAGGAAGAGAGGGGGGGAGAGA
GGGAAGGGATGACCGGAGGAACTTAGTGTCATGTCTGTTCACCCTCCCTC
CTTCCCTCTTTCTCTTCGTCCCTCCTCCCCTACTCCCCTCTCTCCCTCCC
CCTCTTTACAGAAAATGGAGCAAATATTCCGCGAAGGCCGTATTCACGTG
GAGTGCCGGGCGGGTCATGTGGACCGGGTCCAGGCGCTGGTGAGTCCGGA
ATTGGCGCGTGTGTCTCCAACCGGGAGATGCAGTAGAAGTGAGATCCGCC
GTCTTCCAAGATCGATGGCTGAGTGGCACGGTGGTGGATGTGAGGAGGGA
GGAGGGTTTGGTTCGGTGCGAGTACAGGGCTACCGTATCCACTTCCTCGG
CTGGAGCGGACGGTGGGACGAGTGGGTGGAGGCAGGCTCGGAGAGGATCC
AACCCTCTTACTCCAAGATGACCATTGCCGGTCCTCCACCACTTCGTCCT
CCTCGACCACTTCCTCTTGCCATCTCTCATCTCCAAACCCATGTAGATCA
AATCAAGCAGCTTTCCTCGCCTCGTGCTCCGGCCCCCCCTTCCCCCCCTC
TCTCTTTCCTGTCTCCTCTCTCCATGGGACATCGGTCCCATCATTCTACA
ATGATATCAGCGGCAGCGGCAGCACAGGAAGGAGAAGGAGGAGGCGGAGG
AGGGGGAGATGGCGGAAGAGGAGGAGCAGGAGGAGGGGAAGGAAGCAGCA
TAAGCAGCACCAGCAGGAGGGAAGGAGTCCGGGACGCCATGCATGAAATT
GAGGATATGTACTCGTTTCCTCCGCCTCCTGTCACCCCTTCCTTTGCGCT
CTACAACCAAAGCAACGGCTTCGGCAGCAGCACCGGCAGCAACACCGGTA
CCAGCACCAGCAGCACCAGCACCGGCAGCACCAGCAGCACCAGCACCAGC
ACCAGCAGCACCAGCATCAGCTCCAGCAGCAGCACCAGCAATACCAGCAC
CAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCCGTAGCA
GCAGCCACAAACGGGCGAGGAGCATCCGGACCTTTAAGGCCGGCGACTCG
GTGGATGCGATGGATCTGGAAGGGGTGTGGCATGAAGGCACGGTGAAGGA
GGTGGATGGCGTGCAG back to top
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