jgi.p|Nanoce1779_2|632942, mRNA_8175 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632942
Unique NamemRNA_8175
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1224
Alignment locationscaffold_25:338814..340037 +

Link to JBrowse

Properties
Property NameValue
TranscriptId633028
TrackFilteredModels2
ProteinId632942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:338814..340037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632942gene_8175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632942mRNA_8175-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8175CDS_8175Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8175 ID=mRNA_8175|Name=jgi.p|Nanoce1779_2|632942|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGCATTGAAGAGAGGG
TGGTGGCGGTGGCGAAGGAGGGGGCAGGAGGAGGGAGGGAGAGGAGGAGG
GAGAAGAGGGCGGGGTTGCCGCCCATGAGGCCGCGTTTCAAATCGTCGGC
TCGACTGGGGGCATGCTCGTAGTGGAGGATGTATAGACAGAGGAGGAGCC
GAGCTTGTCCCCGGAGGGAGAGGGGCAGGGGGGGCAGGGCTGGTGGGAGA
GGAGGGAGGGTTTCCCTGCTACCACTAGTGGTGACGCTGCTTAAATCGCT
GTTAATTTTGCCAGTGCCTACCACCACCGCTTTCCTTGCCGCCACTGCCT
CTTCCTGCCTCTTGTGCGCCGTGACCAGGGCGGTGTTCACCATGTACTCC
AACCGGCCCTTCAAACTCGTCACCCCCAGGCATCGTCTCGCCACCATCAT
CCTCCCCTTGTTCCCCAGCTCCCTCCCATCCCTCTGCAAGGCCTTGCGGA
CCAGCCATTCGGCTGTCCTAGCATCGGGCGCCAGAACAGCTTCGAGCACC
TCCAAGCATACTTCGTCCAGCAAGGCGAGCTGGCCCAAGGACAGGGAGCT
CATGGCGTCTTCCTCTTCCCCAAGCTCCCCCTCCACCTCCTTCTCTCCGT
CGCCTCTCAGAGGAGCGAAGGAGGAGGAGATGGAGGAGGACGGATCCCAC
TCTTGTTGGGGTGTGGAGGCGAGTGCACGCAGCGTTTGGGCTACGGCAGG
GATCGTGGCCGAATGTTGGGCACCGGTACCAGCTGTGGTGCCGCTGCTGC
TGCGGCTGCTGCTGCCCTGGTGGCGCTGTAAGAGACGAGCGAGGCGGGTA
GAGGATTTGGAGGAGCTGCTGCTGCTGGAGGAGGACAATGAAAGTCTCCT
GGGCGTGATGGGGGAGGCTGAGGCTGAGGCGGAGGAGGAGGCGGCGGCGG
CGGCGACGGCGGAGTGGGGTGTGTAGGCCTGATAGAGGACGGGCTGGAGG
AGGAGGAGGAGGAGAGGGGGGAGAAAGGAGCATAGTGTGCAATGCCAAGC
GGCCTGTACTGTAGGTCGTCGTGGTCGTGGTAACGGTGGTGGCCGCGGCA
TCTATTCGGGTCCTGTGTGTAATGATTGTGGAGTGAGCGTTGAGGTCACG
TCAAGTGCGAGTATTGCTGTAGCGTAGTGATGAGCGATGAGATTCGAAAG
ACGATGAGAGAGGAGATTTGGTGC
back to top

protein sequence of jgi.p|Nanoce1779_2|632942

>mRNA_8175-protein ID=mRNA_8175-protein|Name=jgi.p|Nanoce1779_2|632942|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MYRQRRSRACPRRERGRGGRAGGRGGRVSLLPLVVTLLKSLLILPVPTTT
AFLAATASSCLLCAVTRAVFTMYSNRPFKLVTPRHRLATIILPLFPSSLP
SLCKALRTSHSAVLASGARTASSTSKHTSSSKASWPKDRELMASSSSPSS
PSTSFSPSPLRGAKEEEMEEDGSHSCWGVEASARSVWATAGIVAECWAPV
PAVVPLLLRLLLPWWRCKRRARRVEDLEELLLLEEDNESLLGVMGEAEAE
AEEEAAAAATAEWGV*
back to top

mRNA from alignment at scaffold_25:338814..340037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8175 ID=mRNA_8175|Name=jgi.p|Nanoce1779_2|632942|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_25:338814..340037+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGCATTGAAGAGAGGG
TGGTGGCGGTGGCGAAGGAGGGGGCAGGAGGAGGGAGGGAGAGGAGGAGG
GAGAAGAGGGCGGGGTTGCCGCCCATGAGGCCGCGTTTCAAATCGTCGGC
TCGACTGGGGGCATGCTCGTAGTGGAGGATGTATAGACAGAGGAGGAGCC
GAGCTTGTCCCCGGAGGGAGAGGGGCAGGGGGGGCAGGGCTGGTGGGAGA
GGAGGGAGGGTTTCCCTGCTACCACTAGTGGTGACGCTGCTTAAATCGCT
GTTAATTTTGCCAGTGCCTACCACCACCGCTTTCCTTGCCGCCACTGCCT
CTTCCTGCCTCTTGTGCGCCGTGACCAGGGCGGTGTTCACCATGTACTCC
AACCGGCCCTTCAAACTCGTCACCCCCAGGCATCGTCTCGCCACCATCAT
CCTCCCCTTGTTCCCCAGCTCCCTCCCATCCCTCTGCAAGGCCTTGCGGA
CCAGCCATTCGGCTGTCCTAGCATCGGGCGCCAGAACAGCTTCGAGCACC
TCCAAGCATACTTCGTCCAGCAAGGCGAGCTGGCCCAAGGACAGGGAGCT
CATGGCGTCTTCCTCTTCCCCAAGCTCCCCCTCCACCTCCTTCTCTCCGT
CGCCTCTCAGAGGAGCGAAGGAGGAGGAGATGGAGGAGGACGGATCCCAC
TCTTGTTGGGGTGTGGAGGCGAGTGCACGCAGCGTTTGGGCTACGGCAGG
GATCGTGGCCGAATGTTGGGCACCGGTACCAGCTGTGGTGCCGCTGCTGC
TGCGGCTGCTGCTGCCCTGGTGGCGCTGTAAGAGACGAGCGAGGCGGGTA
GAGGATTTGGAGGAGCTGCTGCTGCTGGAGGAGGACAATGAAAGTCTCCT
GGGCGTGATGGGGGAGGCTGAGGCTGAGGCGGAGGAGGAGGCGGCGGCGG
CGGCGACGGCGGAGTGGGGTGTGTAGGCCTGATAGAGGACGGGCTGGAGG
AGGAGGAGGAGGAGAGGGGGGAGAAAGGAGCATAGTGTGCAATGCCAAGC
GGCCTGTACTGTAGGTCGTCGTGGTCGTGGTAACGGTGGTGGCCGCGGCA
TCTATTCGGGTCCTGTGTGTAATGATTGTGGAGTGAGCGTTGAGGTCACG
TCAAGTGCGAGTATTGCTGTAGCGTAGTGATGAGCGATGAGATTCGAAAG
ACGATGAGAGAGGAGATTTGGTGC
back to top

Coding sequence (CDS) from alignment at scaffold_25:338814..340037+

>mRNA_8175 ID=mRNA_8175|Name=jgi.p|Nanoce1779_2|632942|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_25:338814..340037+ (Nannochloropsis oceanica)
ATGTATAGACAGAGGAGGAGCCGAGCTTGTCCCCGGAGGGAGAGGGGCAG
GGGGGGCAGGGCTGGTGGGAGAGGAGGGAGGGTTTCCCTGCTACCACTAG
TGGTGACGCTGCTTAAATCGCTGTTAATTTTGCCAGTGCCTACCACCACC
GCTTTCCTTGCCGCCACTGCCTCTTCCTGCCTCTTGTGCGCCGTGACCAG
GGCGGTGTTCACCATGTACTCCAACCGGCCCTTCAAACTCGTCACCCCCA
GGCATCGTCTCGCCACCATCATCCTCCCCTTGTTCCCCAGCTCCCTCCCA
TCCCTCTGCAAGGCCTTGCGGACCAGCCATTCGGCTGTCCTAGCATCGGG
CGCCAGAACAGCTTCGAGCACCTCCAAGCATACTTCGTCCAGCAAGGCGA
GCTGGCCCAAGGACAGGGAGCTCATGGCGTCTTCCTCTTCCCCAAGCTCC
CCCTCCACCTCCTTCTCTCCGTCGCCTCTCAGAGGAGCGAAGGAGGAGGA
GATGGAGGAGGACGGATCCCACTCTTGTTGGGGTGTGGAGGCGAGTGCAC
GCAGCGTTTGGGCTACGGCAGGGATCGTGGCCGAATGTTGGGCACCGGTA
CCAGCTGTGGTGCCGCTGCTGCTGCGGCTGCTGCTGCCCTGGTGGCGCTG
TAAGAGACGAGCGAGGCGGGTAGAGGATTTGGAGGAGCTGCTGCTGCTGG
AGGAGGACAATGAAAGTCTCCTGGGCGTGATGGGGGAGGCTGAGGCTGAG
GCGGAGGAGGAGGCGGCGGCGGCGGCGACGGCGGAGTGGGGTGTGTAG
back to top
Synonyms
Publications