jgi.p|Nanoce1779_2|546357, mRNA_8174 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546357
Unique Name	mRNA_8174
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2007
Alignment location	scaffold_25:336831..338837 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546443
Track	FilteredModels2
ProteinId	546357

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:336831..338837 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546357	gene_8174	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546357	mRNA_8174-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8174	CDS_8174	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:336831..338837-
coding sequence from alignment at scaffold_25:336831..338837-

mRNA sequence

>mRNA_8174 ID=mRNA_8174|Name=jgi.p|Nanoce1779_2|546357|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
TCCTCCTCCTCCTCCTCCTCCTCCACTACCACCACCACCACCTCCTCCTT
CTCCCGCTCCTCTTTAACCGTGGATGGCAATACCACGTCATCTCCTCCAC
AGCCCTCTCTCCCTCTCTCCCCCAGCGCTTTGGCCACATTTGACTGGCCG
GACGAAGAGACTCAGCCGGCGTTCGCGCTGGCCGCCAGGGGGTCTTTGCC
CCTCTGGCTGTCCAGACAATGGGGAGGGCAGTACGGTTGGCAAGAAGCCG
CAGCTCTCGCCGCAGAGGCCAACAGGCCAGGACCGGTGACCCTGAGGTGG
AATCAGATGAAAGGGGGGAAGGAGGAAGGGAAAGGGGACATGTGGAAGAA
CACGGAGGCGCAGTTGGAAAACTCGTCGAGCAGCAGCACCAGCAGCATTA
CCGTTCCCACCCTCCCTCCGTCCTTCCCTCTCCTGGCCCGTCTGGCGCAG
GAGGGGGTGCAGGGGGCAGAGCCCTGCCGGTGGTCGCCTGTGGGTGTGCG
GTTGAGTAGAGGGAGGCCTCCCCATGGACTGTGGGGGCTAGCAGCATGGA
GGGAGGGATGGTTCGAAGTGCAGGACGAAGGATCGCAGCTGGTGGCGTTG
GCGACGGGGGTGGGGAGGCAGGGAGGGAAGGGAGGGGAGCATGTGCTGGA
TATCTGTGCGGGGAATGGAGGAAAGAGCCTGGCAATGGGGTCGTTGATGT
GGGGGGGGAGGGATGGAGGGAGGGAGGGAAAGAGGGAAGGAAGATTGTGG
GTGTATGACACGCACCAGTCGAGATTGAAGCACTTGGAGGCAGGAGCGAG
GCGGGCGGGGATGGGGGGCTTGGTGCGGGTGCTAGAGAGTGAGGAGGCGC
TCGATGCGCTATTGTCTCCGGAAACAAAGAAAGGAGCCAGGGAGGAAGGG
AAGGAGGAAGGGCGGTGTGATGTCGTGTTGGTGGACGCGCCGTGTTCATC
CTCGGGTGTGTTGAGACGCCGCCCTTCCCTGCGGTGGACCCTTAAACCCG
AGGATGCTCTCGTCACCCTCCCGGCCATCCAGCGTGCCCTGCTGACGCAA
GCGCAAGCTCATGTGAAGGTGGGAGGGAGGTTGGTCTATGCGACCTGCTC
TCTGCTCAAGGAGGAGAACGAGGAGGTGGTGGCTTGGTTCTTGGAACAGT
ACGGAGAGGGAGGGAAGGAGGGAGGGAAGGAAGGGCGCTTTCGGGCGTTG
CCTTGGCAGGGGGAGGAGGAGGCACCCTTGAGAGCGGCGGCCCAGGCGTG
GAGGGATCGAAACGGAGGAGAGGGAAAAAGGGAAGAGTTGGCGCCGGGGA
CGTTGCAGTTGTTACCCCACGTGCATGGAACGGATGGGTTTTATATGGCG
AGGTTCGAAAGGTATCGTTGAGGACATGGGATGGATATTGCAGAAGTGGC
AGCAGTAGCAGTAGCAGGAGGAGGAGGAGGAAGAGAAATAAGTGCAGAAT
GGAAGAAGGACGTGGATTTTTGATAAACTCGTTGGTGTACGTGTATTGAT
AGATGAAGAAAAAAAGGAGGAGGAAAACATAAGTATCGGGGAGAAAGTAC
TTTTGAAGATGACGATACAGTGAGGGAGAGACATCATGTGTATCTGTATC
TAGTCGGGAACTAGTCTCAGGTAAGGGTCAAAGCACTACCATATAAAGTT
AAGGAATAAATATGCACGATAGACGCTGTGCGACTGAAATCAAGCTGTTT
CATGCTTTTATCCCTCCTTTTCTTTCTGAGTGTCTGTCTTTCGTTGATAT
TACGAGTATCAATTTATTCATTTATTACTCTGCCGCCCACTTTTTCCTGT
CAATGTGGTAGGTCGAGTGGAAAGGGAGGGAAGGAAGATGGGAACTGGCA
ACGGTTGGCGACGTGCTCTGTACAACGGCACCGCTCTGAAGCAAGGCAAA
TTGAGTGTGGCCCAGCCCAGCCCACAAAACGATGGAAAGGGTTAATACTG
TTTCTTAAGTCGGGGGATAGACTGGGCTTGGGGCACGAACCTGAAGAGGT
ATTGGTT

protein sequence of jgi.p|Nanoce1779_2|546357

>mRNA_8174-protein ID=mRNA_8174-protein|Name=jgi.p|Nanoce1779_2|546357|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MKGGKEEGKGDMWKNTEAQLENSSSSSTSSITVPTLPPSFPLLARLAQEG
VQGAEPCRWSPVGVRLSRGRPPHGLWGLAAWREGWFEVQDEGSQLVALAT
GVGRQGGKGGEHVLDICAGNGGKSLAMGSLMWGGRDGGREGKREGRLWVY
DTHQSRLKHLEAGARRAGMGGLVRVLESEEALDALLSPETKKGAREEGKE
EGRCDVVLVDAPCSSSGVLRRRPSLRWTLKPEDALVTLPAIQRALLTQAQ
AHVKVGGRLVYATCSLLKEENEEVVAWFLEQYGEGGKEGGKEGRFRALPW
QGEEEAPLRAAAQAWRDRNGGEGKREELAPGTLQLLPHVHGTDGFYMARF
ERYR*

mRNA from alignment at scaffold_25:336831..338837-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8174 ID=mRNA_8174|Name=jgi.p|Nanoce1779_2|546357|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at scaffold_25:336831..338837- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCACTACCACCACCACCACCTCCTCCTT
CTCCCGCTCCTCTTTAACCGTGGATGGCAATACCACGTCATCTCCTCCAC
AGCCCTCTCTCCCTCTCTCCCCCAGCGCTTTGGCCACATTTGACTGGCCG
GACGAAGAGACTCAGCCGGCGTTCGCGCTGGCCGCCAGGGGGTCTTTGCC
CCTCTGGCTGTCCAGACAATGGGGAGGGCAGTACGGTTGGCAAGAAGCCG
CAGCTCTCGCCGCAGAGGCCAACAGGCCAGGACCGGTGACCCTGAGGTGG
AATCAGATGAAAGGGGGGAAGGAGGAAGGGAAAGGGGACATGTGGAAGAA
CACGGAGGCGCAGTTGGAAAACTCGTCGAGCAGCAGCACCAGCAGCATTA
CCGTTCCCACCCTCCCTCCGTCCTTCCCTCTCCTGGCCCGTCTGGCGCAG
GAGGGGGTGCAGGGGGCAGAGCCCTGCCGGTGGTCGCCTGTGGGTGTGCG
GTTGAGTAGAGGGAGGCCTCCCCATGGACTGTGGGGGCTAGCAGCATGGA
GGGAGGGATGGTTCGAAGTGCAGGACGAAGGATCGCAGCTGGTGGCGTTG
GCGACGGGGGTGGGGAGGCAGGGAGGGAAGGGAGGGGAGCATGTGCTGGA
TATCTGTGCGGGGAATGGAGGAAAGAGCCTGGCAATGGGGTCGTTGATGT
GGGGGGGGAGGGATGGAGGGAGGGAGGGAAAGAGGGAAGGAAGATTGTGG
GTGTATGACACGCACCAGTCGAGATTGAAGCACTTGGAGGCAGGAGCGAG
GCGGGCGGGGATGGGGGGCTTGGTGCGGGTGCTAGAGAGTGAGGAGGCGC
TCGATGCGCTATTGTCTCCGGAAACAAAGAAAGGAGCCAGGGAGGAAGGG
AAGGAGGAAGGGCGGTGTGATGTCGTGTTGGTGGACGCGCCGTGTTCATC
CTCGGGTGTGTTGAGACGCCGCCCTTCCCTGCGGTGGACCCTTAAACCCG
AGGATGCTCTCGTCACCCTCCCGGCCATCCAGCGTGCCCTGCTGACGCAA
GCGCAAGCTCATGTGAAGGTGGGAGGGAGGTTGGTCTATGCGACCTGCTC
TCTGCTCAAGGAGGAGAACGAGGAGGTGGTGGCTTGGTTCTTGGAACAGT
ACGGAGAGGGAGGGAAGGAGGGAGGGAAGGAAGGGCGCTTTCGGGCGTTG
CCTTGGCAGGGGGAGGAGGAGGCACCCTTGAGAGCGGCGGCCCAGGCGTG
GAGGGATCGAAACGGAGGAGAGGGAAAAAGGGAAGAGTTGGCGCCGGGGA
CGTTGCAGTTGTTACCCCACGTGCATGGAACGGATGGGTTTTATATGGCG
AGGTTCGAAAGGTATCGTTGAGGACATGGGATGGATATTGCAGAAGTGGC
AGCAGTAGCAGTAGCAGGAGGAGGAGGAGGAAGAGAAATAAGTGCAGAAT
GGAAGAAGGACGTGGATTTTTGATAAACTCGTTGGTGTACGTGTATTGAT
AGATGAAGAAAAAAAGGAGGAGGAAAACATAAGTATCGGGGAGAAAGTAC
TTTTGAAGATGACGATACAGTGAGGGAGAGACATCATGTGTATCTGTATC
TAGTCGGGAACTAGTCTCAGGTAAGGGTCAAAGCACTACCATATAAAGTT
AAGGAATAAATATGCACGATAGACGCTGTGCGACTGAAATCAAGCTGTTT
CATGCTTTTATCCCTCCTTTTCTTTCTGAGTGTCTGTCTTTCGTTGATAT
TACGAGTATCAATTTATTCATTTATTACTCTGCCGCCCACTTTTTCCTGT
CAATGTGGTAGGTCGAGTGGAAAGGGAGGGAAGGAAGATGGGAACTGGCA
ACGGTTGGCGACGTGCTCTGTACAACGGCACCGCTCTGAAGCAAGGCAAA
TTGAGTGTGGCCCAGCCCAGCCCACAAAACGATGGAAAGGGTTAATACTG
TTTCTTAAGTCGGGGGATAGACTGGGCTTGGGGCACGAACCTGAAGAGGT
ATTGGTT

Coding sequence (CDS) from alignment at scaffold_25:336831..338837-

>mRNA_8174 ID=mRNA_8174|Name=jgi.p|Nanoce1779_2|546357|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_25:336831..338837- (Nannochloropsis oceanica)
ATGAAAGGGGGGAAGGAGGAAGGGAAAGGGGACATGTGGAAGAACACGGA
GGCGCAGTTGGAAAACTCGTCGAGCAGCAGCACCAGCAGCATTACCGTTC
CCACCCTCCCTCCGTCCTTCCCTCTCCTGGCCCGTCTGGCGCAGGAGGGG
GTGCAGGGGGCAGAGCCCTGCCGGTGGTCGCCTGTGGGTGTGCGGTTGAG
TAGAGGGAGGCCTCCCCATGGACTGTGGGGGCTAGCAGCATGGAGGGAGG
GATGGTTCGAAGTGCAGGACGAAGGATCGCAGCTGGTGGCGTTGGCGACG
GGGGTGGGGAGGCAGGGAGGGAAGGGAGGGGAGCATGTGCTGGATATCTG
TGCGGGGAATGGAGGAAAGAGCCTGGCAATGGGGTCGTTGATGTGGGGGG
GGAGGGATGGAGGGAGGGAGGGAAAGAGGGAAGGAAGATTGTGGGTGTAT
GACACGCACCAGTCGAGATTGAAGCACTTGGAGGCAGGAGCGAGGCGGGC
GGGGATGGGGGGCTTGGTGCGGGTGCTAGAGAGTGAGGAGGCGCTCGATG
CGCTATTGTCTCCGGAAACAAAGAAAGGAGCCAGGGAGGAAGGGAAGGAG
GAAGGGCGGTGTGATGTCGTGTTGGTGGACGCGCCGTGTTCATCCTCGGG
TGTGTTGAGACGCCGCCCTTCCCTGCGGTGGACCCTTAAACCCGAGGATG
CTCTCGTCACCCTCCCGGCCATCCAGCGTGCCCTGCTGACGCAAGCGCAA
GCTCATGTGAAGGTGGGAGGGAGGTTGGTCTATGCGACCTGCTCTCTGCT
CAAGGAGGAGAACGAGGAGGTGGTGGCTTGGTTCTTGGAACAGTACGGAG
AGGGAGGGAAGGAGGGAGGGAAGGAAGGGCGCTTTCGGGCGTTGCCTTGG
CAGGGGGAGGAGGAGGCACCCTTGAGAGCGGCGGCCCAGGCGTGGAGGGA
TCGAAACGGAGGAGAGGGAAAAAGGGAAGAGTTGGCGCCGGGGACGTTGC
AGTTGTTACCCCACGTGCATGGAACGGATGGGTTTTATATGGCGAGGTTC
GAAAGGTATCGTTGA

Synonyms

Publications