jgi.p|Nanoce1779_2|632940, mRNA_8173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632940
Unique NamemRNA_8173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1599
Alignment locationscaffold_25:334938..336649 -

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Properties
Property NameValue
TranscriptId633026
TrackFilteredModels2
ProteinId632940
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:334938..336649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632940gene_8173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632940mRNA_8173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8173CDS_8173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8173 ID=mRNA_8173|Name=jgi.p|Nanoce1779_2|632940|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp
CAGGGGCGGCACAGCCAGCAAGTATGCCAGCAGTTTCATCGTTGTCATGC
TGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCCACCGCT
ACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATATACGGAT
GATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTACAAGTA
ACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGTATCGCC
GGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCCTCGCAT
TACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACACGAGACG
TCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCTGCGCTC
TCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGGGTTGGT
TATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTGGTCACT
ATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCCCAAGGG
TTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAAAGAGAC
AAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCACCACCA
CCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGCAAC
AACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGACGG
CAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCGAGC
AAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCTTTG
ATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGATCA
ACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGGAGA
AGGGAGAGGACGAAGGTATCCTCTACAGCGCCCGCCGGGACGATCTGAAA
ACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGGAGGGAGGGGGGGAGCG
GTGGGTGATGCACGCGACTCCAGCGTTCTCTGCTAGTCATATCCAGACGG
AGCCTTTCCCGAAAGAGAAAGTCATATTGAATGTGTTGGATGCGTTTTTC
AAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAGAGGGAGGGAAGAAAGA
CATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTATTTGTCAGTACAACGGT
GGCTCTACGCACAGACGTTTAATCCCTCCGAGGAACCGTTTGGATGGGAG
GAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTTGGCAAGGAAGGAGGGA
GGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATCGAGAGGGCATGGCTGA
GTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTCGTTGGGTCTAAGGAAG
GAGGAAAAGTGAAATCTGAAACAAAAATATGTGTCCCGACCGAGGAGGAT
TGCGAAGGGAAGGAAGAGGGAGGAGCCGTTTTTTTTTAAAATCAAAAAAT
AGGCAAAATGACCTCAAGCTTTGAAAAGGCAAGGAAGAAGCAAGCAAGC
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protein sequence of jgi.p|Nanoce1779_2|632940

>mRNA_8173-protein ID=mRNA_8173-protein|Name=jgi.p|Nanoce1779_2|632940|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MLMQTTLSFLHRFATATATATPLFLTPRAPTHIRMMSLSSSSASSTTTAT
SNTTPPPLNIAIIGAGIAGLSCARVLLQAHPTPRITLFEKSTTHGRCATR
DVPGIGSFDHGAPHFSALSPEFQAQVQQWQEEGLVMPASSSSSSPSLWPG
HYVVHPSMRSLPTHLAQGLSIQRPFLITKLEMKETKNQQQEQDRCAATTT
TTTTTTTTSDSTTTYNSNNNDNNKRGQWILHHDDGKITQKFDAVVVAVPA
EQSIPLLEPVSPALAAPLIDVKSASCLSVMAAWDQPVGAPFTEWKKAKAE
EKGEDEGILYSARRDDLKTPGRPGGEGGKEGGGERWVMHATPAFSASHIQ
TEPFPKEKVILNVLDAFFKEVERGKEGEREGGKKDMGEERAPRPVYLSVQ
RWLYAQTFNPSEEPFGWEEREKVGACGDGWQGRREGGEEEEGKGGIERAW
LSGRRLGEAMLVSLGLRKEEK*
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mRNA from alignment at scaffold_25:334938..336649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8173 ID=mRNA_8173|Name=jgi.p|Nanoce1779_2|632940|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_25:334938..336649- (Nannochloropsis oceanica)
CAGGGGCGGCACAGCCAGCAAGTATGCCAGCAGTTTCATCGTTGTCATGC
TGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCCACCGCT
ACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATATACGGAT
GATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTACAAGTA
ACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGTATCGCC
GGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCCTCGCAT
TACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACACGAGACG
TCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCTGCGCTC
TCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGGGTTGGT
TATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTGGTCACT
ATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCCCAAGGG
TTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAAAGAGAC
AAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCACCACCA
CCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGCAAC
AACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGACGG
CAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCGAGC
AAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCTTTG
ATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGATCA
ACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGGAGA
AGGGAGAGGACGAAGGGTACGTGCGTTGTCCCCTTCCCCTACCCCCACTT
TATTTCCTCCTTAAGATTTTCACCAACAGTTTTCCTCTGTAATCCCCCCC
AAAATTCCAACCCTCCCTCCCTCCCACAGTATCCTCTACAGCGCCCGCCG
GGACGATCTGAAAACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGGAGG
GAGGGGGGGAGCGGTGGGTGATGCACGCGACTCCAGCGTTCTCTGCTAGT
CATATCCAGACGGAGCCTTTCCCGAAAGAGAAAGTCATATTGAATGTGTT
GGATGCGTTTTTCAAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAGAGG
GAGGGAAGAAAGACATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTATTTG
TCAGTACAACGGTGGCTCTACGCACAGACGTTTAATCCCTCCGAGGAACC
GTTTGGATGGGAGGAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTTGGC
AAGGAAGGAGGGAGGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATCGAG
AGGGCATGGCTGAGTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTCGTT
GGGTCTAAGGAAGGAGGAAAAGTGAAATCTGAAACAAAAATATGTGTCCC
GACCGAGGAGGATTGCGAAGGGAAGGAAGAGGGAGGAGCCGTTTTTTTTT
AAAATCAAAAAATAGGCAAAATGACCTCAAGCTTTGAAAAGGCAAGGAAG
AAGCAAGCAAGC
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Coding sequence (CDS) from alignment at scaffold_25:334938..336649-

>mRNA_8173 ID=mRNA_8173|Name=jgi.p|Nanoce1779_2|632940|organism=Nannochloropsis oceanica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_25:334938..336649- (Nannochloropsis oceanica)
TATCCTCTACAGCGCCCGCCGGGACGATCTGAAAACCCCAGGCCGCCCTG
GGGGGGAGGGGGGAAAGGAGGGAGGGGGGGAGCGGTGGGTGATGCACGCG
ACTCCAGCGTTCTCTGCTAGTCATATCCAGACGGAGCCTTTCCCGAAAGA
GAAAGTCATATTGAATGTGTTGGATGCGTTTTTCAAAGAGGTGGAGAGAG
GGAAGGAGGGAGAGAGAGAGGGAGGGAAGAAAGACATGGGGGAGGAAAGG
GCGCCCAGGCCTGTTTATTTGTCAGTACAACGGTGGCTCTACGCACAGAC
GTTTAATCCCTCCGAGGAACCGTTTGGATGGGAGGAGAGAGAGAAGGTGG
GGGCTTGTGGGGATGGTTGGCAAGGAAGGAGGGAGGGAGGGGAGGAGGAG
GAGGGGAAAGGGGGAATCGAGAGGGCATGGCTGAGTGGGAGGAGGTTAGG
AGAAGCGATGCTGGTGTCGTTGGGTCTAAGGAAGGAGGAAAAGTGAATGC
TGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCCACCGCT
ACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATATACGGAT
GATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTACAAGTA
ACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGTATCGCC
GGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCCTCGCAT
TACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACACGAGACG
TCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCTGCGCTC
TCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGGGTTGGT
TATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTGGTCACT
ATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCCCAAGGG
TTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAAAGAGAC
AAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCACCACCA
CCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGCAAC
AACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGACGG
CAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCGAGC
AAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCTTTG
ATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGATCA
ACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGGAGA
AGGGAGAGGACGAAGGTATCCTCTACAGCGCCCGCCGGGACGATCTGAAA
ACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGGAGGGAGGGGGGGAGCG
GTGGGTGATGCACGCGACTCCAGCGTTCTCTGCTAGTCATATCCAGACGG
AGCCTTTCCCGAAAGAGAAAGTCATATTGAATGTGTTGGATGCGTTTTTC
AAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAGAGGGAGGGAAGAAAGA
CATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTATTTGTCAGTACAACGGT
GGCTCTACGCACAGACGTTTAATCCCTCCGAGGAACCGTTTGGATGGGAG
GAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTTGGCAAGGAAGGAGGGA
GGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATCGAGAGGGCATGGCTGA
GTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTCGTTGGGTCTAAGGAAG
GAGGAAAAGTGAATGCTGATGCAGACCACTCTTTCCTTCCTACACCGCTT
CGCCACTGCCACCGCTACCGCCACGCCCCTCTTCTTAACCCCCCGAGCAC
CCACACATATACGGATGATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACC
ACCACCGCTACAAGTAACACTACCCCCCCTCCCCTTAACATTGCCATAAT
TGGTGCGGGTATCGCCGGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCC
ATCCCACCCCTCGCATTACCCTCTTTGAGAAAAGCACCACCCACGGTCGT
TGCGCCACACGAGACGTCCCGGGCATTGGTTCCTTCGACCACGGCGCTCC
TCATTTCTCTGCGCTCTCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGC
AGGAGGAGGGGTTGGTTATGCCTGCATCGTCTTCGTCGTCGTCACCGTCG
TTGTGGCCTGGTCACTATGTGGTCCATCCAAGCATGCGTTCTCTTCCCAC
GCATCTCGCCCAAGGGTTGTCCATTCAACGGCCTTTTCTCATCACCAAAC
TGGAGATGAAAGAGACAAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCA
GCCACCACCACCACCACCACCACCACCACCACCACCAGCGACAGCACCAC
CACCTACAACAGCAACAACAATGACAACAACAAAAGAGGGCAATGGATCC
TCCACCACGATGACGGCAAAATCACGCAAAAATTTGACGCTGTGGTCGTT
GCCGTTCCAGCCGAGCAAAGCATCCCCTTGCTTGAACCGGTATCTCCTGC
ACTGGCAGCACCTTTGATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGA
TGGCTGCATGGGATCAACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAA
GCAAAGGCGGAGGAGAAGGGAGAGGACGAAGG
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Synonyms
Publications