jgi.p|Nanoce1779_2|532574, mRNA_8170 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532574
Unique NamemRNA_8170
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length561
Alignment locationscaffold_25:324683..326523 -

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Properties
Property NameValue
TranscriptId532660
TrackFilteredModels2
ProteinId532574
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:324683..326523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532574gene_8170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532574mRNA_8170-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8170CDS_8170Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8170 ID=mRNA_8170|Name=jgi.p|Nanoce1779_2|532574|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
TTCGGCAACCCGACCCCTGAAGAAAAAGAGGCATTTACTCTTGTCCTCCG
TGGCCACATTGCCCTGGCCCGCGCCCGTTTCCCCGAAGGAATCTTGGGGG
CCAAGCTAGATATTTTGGCACGGCTCCCTCTCTGGAGCGTCGGTCTTGAC
TATAGACACGGCACTGGCCACGGCGTGGGCGCCTTCCTCAACGTTCATGA
GGGACCCCAATCCATCTCCTACAAGAAACGGGCGTACGAAGAAGGGCTAA
CTCCGGGCATGGTCACGTCGAACGAACCCGGGTACTATTCCGATGGTCGT
TTCGGGATCCGGATTGAGAGTCTGTTGGTATGTAATGAGGCCCCGACCAA
GCACCGCTTTGGCATGATCAGATACTGCTCCTTCGAAACCATCACTATGG
TTCCTATCCAGCTCAAGATGATCGAGCCCTCCTTAATGACGGCCGATGAT
ACGGTCTGGTTGAATGAATACCATGCACAGGTTCGAGCATCGCTCTTGCC
GTTGCTGAAGGAGGATAAGGTAGCGACAGCCTACTTGCTGCGGGAGACCG
AGCCCATGTAG
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protein sequence of jgi.p|Nanoce1779_2|532574

>mRNA_8170-protein ID=mRNA_8170-protein|Name=jgi.p|Nanoce1779_2|532574|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
FGNPTPEEKEAFTLVLRGHIALARARFPEGILGAKLDILARLPLWSVGLD
YRHGTGHGVGAFLNVHEGPQSISYKKRAYEEGLTPGMVTSNEPGYYSDGR
FGIRIESLLVCNEAPTKHRFGMIRYCSFETITMVPIQLKMIEPSLMTADD
TVWLNEYHAQVRASLLPLLKEDKVATAYLLRETEPM*
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mRNA from alignment at scaffold_25:324683..326523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8170 ID=mRNA_8170|Name=jgi.p|Nanoce1779_2|532574|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp|location=Sequence derived from alignment at scaffold_25:324683..326523- (Nannochloropsis oceanica)
TTCGGCAACCCGACCCCTGAAGAAAAAGAGGCATTTACTCTTGTCCTCCG
TGGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCTTCTTTCCAGGCCCTCT
CGCGCAAGTCCCCGCTCGCCTTGCTAACGTTCACTGGACGCCGCACCGCA
CGACTAATCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCCTCCCCCCAGGCCACATTGCCCTGGCCCGCGCCCGTTTCCCCGAAG
GAATCTTGGGGGCCAAGCTAGATATTTTGGCACGGCTCCCTCTCTGGAGC
GTCGGTCTTGACTATAGACACGGCACTGGTAAGCAAGCCCTCCTTGGTTC
TCTCCCTTCCCCAACTCTTTCGCTCGGTCAATGCTTTTTTGAATTTCTTC
TCTCTACACACACGCATATATATATATATATATATAGATATATAGATGTG
GAGAGAGACATGTGTGGGTGCGTGGGTGCGTGGGTGGGTGCGTGTGTTTG
TGCACCTCTTCATATCTTTGTATATACATAAATACACTTTTGTAATACTT
TTCACATATTTATCCTTTCCCTCGTCTTCTTCTTAACAGGCCACGGCGTG
GGCGCCTTCCTCAACGTTCATGAGGGACCCCAATCCATCTCCTACAAGAA
ACGGGCGTACGAAGAAGGGCTAACTCCGGGTACCTTCATTCTCCTTCCCC
CCTCCCTCCCTTCCTTTTTTCCTCCCTCCCTCCTCATCGCGTCCAGCTCC
TCGTGCCCTTCTGAACTAGTGACATCTCTGCCTTCCCTCCTACCCTCTCT
CCTTCCCTTTCTCCTTCCTTCTTTTCTTTCCTCCCCTCCTTCTTCTCTGT
AGTCATGGCTGGATGTTACGCCCGTTGCAATGATCTGACTGTATATATGA
GTTGTCCATGCCAAAGCTCACCACATCCTTTCGCTCCTCCCTCCCTCCCT
CCCTTGCCAGGCATGGTCACGTCGAACGAACCCGGGTACTATTCCGATGG
TCGTTTCGGGATCCGGATTGAGAGTCTGTTGGTATGTAATGAGGCCCCGA
CCAAGCACCGCTTTGGCATGATCAGGTAAACAAATGGGGGAGGGAGGGAA
ATCATTCTCTCCTTTGATATTGCACGTTTGAGACCAGCAATGCGAGATAT
GAACGCTTGGTTTGCCAAGAGATCGTCGCTCGGCTCTGTCAGTCACAACT
CGTTTGAAGGCCTGCGGCCGTAAACGACGAATTCAATTTCTTGAGCAGCT
CGTGAAAAATCGGGATGACCCTCCCGATGTTGACATATTTTCCTCCCCCT
CCCCCTCCCTCCCTACCTCCCTACCTAGATACTGCTCCTTCGAAACCATC
ACTATGGTTCCTATCCAGCTCAAGATGATCGAGCCCTCCTTAATGACGGC
CGATGATACGGTCTGGTTGAATGAATACCATGCACAGGTACGTCCTCCCT
CCCTCCTTTCCTCCCTCCTTCCCTCCTTGTCTCTCCCCTCATGGCGCCTG
TGGACGTGAAGGAACTCAGCAGCTGCCATGCGCAGATTCGCTTCCTTTTC
CCTACCTTATTCCTTTTTGAATGGCCTACCTCTTTTCTTGAATGTCTGCT
CTTCTCTTCAGATACACCCGTGCATTTCGCCCGCACCCGAGGAGAGAGCG
AGGGTGGGAGGGACTGACGAACGAAACGGTTTTCCCCGTATTCACATTCA
ATCTCCACTCATTCTCCTTTTCTATGTCCTTGTTCTGATTTTTATTTTTG
GGGGTTATAGGTTCGAGCATCGCTCTTGCCGTTGCTGAAGGAGGATAAGG
TAGCGACAGCCTACTTGCTGCGGGAGACCGAGCCCATGTAG
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Coding sequence (CDS) from alignment at scaffold_25:324683..326523-

>mRNA_8170 ID=mRNA_8170|Name=jgi.p|Nanoce1779_2|532574|organism=Nannochloropsis oceanica|type=CDS|length=3366bp|location=Sequence derived from alignment at scaffold_25:324683..326523- (Nannochloropsis oceanica)
GTTCGAGCATCGCTCTTGCCGTTGCTGAAGGAGGATAAGGTAGCGACAGC
CTACTTGCTGCGGGAGACCGAGCCCATGTAGATACTGCTCCTTCGAAACC
ATCACTATGGTTCCTATCCAGCTCAAGATGATCGAGCCCTCCTTAATGAC
GGCCGATGATACGGTCTGGTTGAATGAATACCATGCACAGGCATGGTCAC
GTCGAACGAACCCGGGTACTATTCCGATGGTCGTTTCGGGATCCGGATTG
AGAGTCTGTTGGTATGTAATGAGGCCCCGACCAAGCACCGCTTTGGCATG
ATCAGGCCACGGCGTGGGCGCCTTCCTCAACGTTCATGAGGGACCCCAAT
CCATCTCCTACAAGAAACGGGCGTACGAAGAAGGGCTAACTCCGGGCCAC
ATTGCCCTGGCCCGCGCCCGTTTCCCCGAAGGAATCTTGGGGGCCAAGCT
AGATATTTTGGCACGGCTCCCTCTCTGGAGCGTCGGTCTTGACTATAGAC
ACGGCACTGTTCGGCAACCCGACCCCTGAAGAAAAAGAGGCATTTACTCT
TGTCCTCCGTGGTTCGAGCATCGCTCTTGCCGTTGCTGAAGGAGGATAAG
GTAGCGACAGCCTACTTGCTGCGGGAGACCGAGCCCATGTAGATACTGCT
CCTTCGAAACCATCACTATGGTTCCTATCCAGCTCAAGATGATCGAGCCC
TCCTTAATGACGGCCGATGATACGGTCTGGTTGAATGAATACCATGCACA
GGCATGGTCACGTCGAACGAACCCGGGTACTATTCCGATGGTCGTTTCGG
GATCCGGATTGAGAGTCTGTTGGTATGTAATGAGGCCCCGACCAAGCACC
GCTTTGGCATGATCAGGCCACGGCGTGGGCGCCTTCCTCAACGTTCATGA
GGGACCCCAATCCATCTCCTACAAGAAACGGGCGTACGAAGAAGGGCTAA
CTCCGGGCCACATTGCCCTGGCCCGCGCCCGTTTCCCCGAAGGAATCTTG
GGGGCCAAGCTAGATATTTTGGCACGGCTCCCTCTCTGGAGCGTCGGTCT
TGACTATAGACACGGCACTGTTCGGCAACCCGACCCCTGAAGAAAAAGAG
GCATTTACTCTTGTCCTCCGTGGTTCGAGCATCGCTCTTGCCGTTGCTGA
AGGAGGATAAGGTAGCGACAGCCTACTTGCTGCGGGAGACCGAGCCCATG
TAGATACTGCTCCTTCGAAACCATCACTATGGTTCCTATCCAGCTCAAGA
TGATCGAGCCCTCCTTAATGACGGCCGATGATACGGTCTGGTTGAATGAA
TACCATGCACAGGCATGGTCACGTCGAACGAACCCGGGTACTATTCCGAT
GGTCGTTTCGGGATCCGGATTGAGAGTCTGTTGGTATGTAATGAGGCCCC
GACCAAGCACCGCTTTGGCATGATCAGGCCACGGCGTGGGCGCCTTCCTC
AACGTTCATGAGGGACCCCAATCCATCTCCTACAAGAAACGGGCGTACGA
AGAAGGGCTAACTCCGGGCCACATTGCCCTGGCCCGCGCCCGTTTCCCCG
AAGGAATCTTGGGGGCCAAGCTAGATATTTTGGCACGGCTCCCTCTCTGG
AGCGTCGGTCTTGACTATAGACACGGCACTGTTCGGCAACCCGACCCCTG
AAGAAAAAGAGGCATTTACTCTTGTCCTCCGTGGTTCGAGCATCGCTCTT
GCCGTTGCTGAAGGAGGATAAGGTAGCGACAGCCTACTTGCTGCGGGAGA
CCGAGCCCATGTAGATACTGCTCCTTCGAAACCATCACTATGGTTCCTAT
CCAGCTCAAGATGATCGAGCCCTCCTTAATGACGGCCGATGATACGGTCT
GGTTGAATGAATACCATGCACAGGCATGGTCACGTCGAACGAACCCGGGT
ACTATTCCGATGGTCGTTTCGGGATCCGGATTGAGAGTCTGTTGGTATGT
AATGAGGCCCCGACCAAGCACCGCTTTGGCATGATCAGGCCACGGCGTGG
GCGCCTTCCTCAACGTTCATGAGGGACCCCAATCCATCTCCTACAAGAAA
CGGGCGTACGAAGAAGGGCTAACTCCGGGCCACATTGCCCTGGCCCGCGC
CCGTTTCCCCGAAGGAATCTTGGGGGCCAAGCTAGATATTTTGGCACGGC
TCCCTCTCTGGAGCGTCGGTCTTGACTATAGACACGGCACTGTTCGGCAA
CCCGACCCCTGAAGAAAAAGAGGCATTTACTCTTGTCCTCCGTGGTTCGA
GCATCGCTCTTGCCGTTGCTGAAGGAGGATAAGGTAGCGACAGCCTACTT
GCTGCGGGAGACCGAGCCCATGTAGATACTGCTCCTTCGAAACCATCACT
ATGGTTCCTATCCAGCTCAAGATGATCGAGCCCTCCTTAATGACGGCCGA
TGATACGGTCTGGTTGAATGAATACCATGCACAGGCATGGTCACGTCGAA
CGAACCCGGGTACTATTCCGATGGTCGTTTCGGGATCCGGATTGAGAGTC
TGTTGGTATGTAATGAGGCCCCGACCAAGCACCGCTTTGGCATGATCAGG
CCACGGCGTGGGCGCCTTCCTCAACGTTCATGAGGGACCCCAATCCATCT
CCTACAAGAAACGGGCGTACGAAGAAGGGCTAACTCCGGGCCACATTGCC
CTGGCCCGCGCCCGTTTCCCCGAAGGAATCTTGGGGGCCAAGCTAGATAT
TTTGGCACGGCTCCCTCTCTGGAGCGTCGGTCTTGACTATAGACACGGCA
CTGTTCGGCAACCCGACCCCTGAAGAAAAAGAGGCATTTACTCTTGTCCT
CCGTGGTTCGAGCATCGCTCTTGCCGTTGCTGAAGGAGGATAAGGTAGCG
ACAGCCTACTTGCTGCGGGAGACCGAGCCCATGTAGATACTGCTCCTTCG
AAACCATCACTATGGTTCCTATCCAGCTCAAGATGATCGAGCCCTCCTTA
ATGACGGCCGATGATACGGTCTGGTTGAATGAATACCATGCACAGGCATG
GTCACGTCGAACGAACCCGGGTACTATTCCGATGGTCGTTTCGGGATCCG
GATTGAGAGTCTGTTGGTATGTAATGAGGCCCCGACCAAGCACCGCTTTG
GCATGATCAGGCCACGGCGTGGGCGCCTTCCTCAACGTTCATGAGGGACC
CCAATCCATCTCCTACAAGAAACGGGCGTACGAAGAAGGGCTAACTCCGG
GCCACATTGCCCTGGCCCGCGCCCGTTTCCCCGAAGGAATCTTGGGGGCC
AAGCTAGATATTTTGGCACGGCTCCCTCTCTGGAGCGTCGGTCTTGACTA
TAGACACGGCACTGTTCGGCAACCCGACCCCTGAAGAAAAAGAGGCATTT
ACTCTTGTCCTCCGTG
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Synonyms
Publications