jgi.p|Nanoce1779_2|574247, mRNA_817 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574247
Unique NamemRNA_817
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1447
Alignment locationscaffold_2:503742..505518 +

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Properties
Property NameValue
TranscriptId574333
TrackFilteredModels2
ProteinId574247
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:503742..505518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574247gene_817Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574247mRNA_817-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_817CDS_817Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_817 ID=mRNA_817|Name=jgi.p|Nanoce1779_2|574247|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
AACTATAGGGCAAAGAATCAGCCAGCGGTTCCGCCCGCGGTCTGTAGTTA
AGCGCACTTTCGAGGGAGGCAATAACACAATCTGCTCTCGCCCAACGCCG
TCATCATCAGTCCTTGGTTATTCATAGCTAGCCTTTGCAGCAGCCGTAAA
CATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCC
CCCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTA
CCGCGCTTCTGCTACCACCCCGCCCTCTCCATTGCCGGCAACTGCCGCAT
GTGCCTGGTCGAAATTGAGCGCACCCCCAAGCCAGTTGCATCTTGCGCGA
TGCCCGTGATGAAGGACATGAAGGTCTATACCAACAGCCCATTGGTCAAG
AAGGCTCGGGAGGCCGTGCTGGAGTTCTTGTTGCTGAACCATCCTTTGGA
CTGCCCCATTTGTGACCAGGGTGGGGAGTGCGACTTGCAGGACCAGACCA
TGTTGTACGCGTCTGACAGGTCCAGATTCTACGAGTTCAAGCGTGGGGTG
GAGGACAAGAATTTGGGGCCTTTTATCAAGACGATTATGACGCGCTGCAT
TCACTGCACACGCTGTGTGCGCTTCGCGGATGAGATTGCCGGAGTCGGGG
ACATGGGCACGACCAACCGGGGAAGGGACACAGAGATCGGCACTTACATT
GGGAAAGCGTTTGAATCCGAGGTCTCGGGCAACGTTATTGATCTCTGCCC
CGTCGGGGCTCTGACGGGCAAGACCTACTCCTTCTCCTCTTCCTCCGTCC
CTTCATCCTCCTCCTCCTCCGCCACGGCCTCCTCCACCCTGGCCGCCCGT
GCTGCCGCGCGTCCCTTACCAGAACTTTCCACTGCTGCTGCTGCTGCTAC
TGCTGGCACGTCTGCTCCCTCTTGCACGCGAGGGGCTGCTGCCATGGGGG
TTATGTCTCAACGGGCGCTTTCATGCTCGTTTACTTCCGTCTTCCACTTG
CAGAAGGCCGGCATGAACCCTCAGGATTTCCAGAAGGTGACCACGTTGTT
CAAGCGCTCGGTGATTTTCCCAATGGCAGCCCTGGTAACGGGCGCAACGG
TTGCCACGATTGGTGCGGCCGTTTAGGGAGGAAGGGAGAGAAGGGTGGGC
TTTGTGTGATATCAATGTGCGTGTGGGGGGGAAGTATTACGATGGTGACG
GAAAATATGTTTGCTCATGTTTTTGACCCGCCCTTTCAAAGTGGTAACAG
ACATTTAAGTGGTGATGGTGGGCGTGGGGGTGGCGGAGGAATGGAAGTGA
AGGAGAAGAAGGATGAGAGGTAATGGTAGGATGATAGGGAAAGGTATCTA
CGAAGAATGAGCTGATAGCTTGAAAGGAGATTAAGAGGAAGAAGAAGAAG
AAGGAGACAGACGACAACTTGAAGATTCAGTCAAATGAACTCATGGC
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protein sequence of jgi.p|Nanoce1779_2|574247

>mRNA_817-protein ID=mRNA_817-protein|Name=jgi.p|Nanoce1779_2|574247|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MSNLTRLFVNDIEVFVPPNTTVLEAAEKVGVQVPRFCYHPALSIAGNCRM
CLVEIERTPKPVASCAMPVMKDMKVYTNSPLVKKAREAVLEFLLLNHPLD
CPICDQGGECDLQDQTMLYASDRSRFYEFKRGVEDKNLGPFIKTIMTRCI
HCTRCVRFADEIAGVGDMGTTNRGRDTEIGTYIGKAFESEVSGNVIDLCP
VGALTGKTYSFSSSSVPSSSSSSATASSTLAARAAARPLPELSTAAAAAT
AGTSAPSCTRGAAAMGVMSQRALSCSFTSVFHLQKAGMNPQDFQKVTTLF
KRSVIFPMAALVTGATVATIGAAV*
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mRNA from alignment at scaffold_2:503742..505518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_817 ID=mRNA_817|Name=jgi.p|Nanoce1779_2|574247|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at scaffold_2:503742..505518+ (Nannochloropsis oceanica)
AACTATAGGGCAAAGAATCAGCCAGCGGTTCCGCCCGCGGTCTGTAGTTA
AGCGCACTTTCGAGGGAGGCAATAACACAATCTGCTCTCGCCCAACGCCG
TCATCATCAGTCCTTGGTTATTCATAGCTAGCCTTTGCAGCAGCCGTAAA
CATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCC
CCCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTA
AGTTTGGCTCTTTGTAAGAGGGAGGGGTAGGGAGGAGAGGTTTCGTTGCT
TGCTGTGTCAGGCTCAGAAAGCATGTGGATCGCGCATGACAGCTTATGAC
AAACATTCTGTCAGTGGCATGGTCTTGATTGTCTTGGAAGGCGAGGCGAG
GTGCTAGATGGGCGAAACGAAAAGGGGACCAGCCGAGAGGAGCAACCACA
GCTTTTCACTCTGACAACAAAAAACACTGGAAGCACCGGGTGGAGCTTTT
AAAAACCCCAAACCCTCCATCTCATCACATTCTTGATTTCCCCTCTCCCA
CTTTTTCTTTCCTCCGGGATGGCTCAGGTACCGCGCTTCTGCTACCACCC
CGCCCTCTCCATTGCCGGCAACTGCCGCATGTGCCTGGTCGAAATTGAGC
GCACCCCCAAGCCAGTTGCATCTTGCGCGATGCCCGTGATGAAGGACATG
AAGGTCTATACCAACAGCCCATTGGTCAAGAAGGCTCGGGAGGCCGTGCT
GGAGTTCTTGTTGCTGAACCATCCTTTGGACTGCCCCATTTGTGACCAGG
GTGGGGAGTGCGACTTGCAGGACCAGACCATGTTGTACGCGTCTGACAGG
TCCAGATTCTACGAGTTCAAGCGTGGGGTGGAGGACAAGAATTTGGGGCC
TTTTATCAAGACGATTATGACGCGCTGCATTCACTGCACACGCTGTGTGC
GCTTCGCGGATGAGATTGCCGGAGTCGGGGACATGGGCACGACCAACCGG
GGAAGGGACACAGAGATCGGCACTTACATTGGGAAAGCGTTTGAATCCGA
GGTCTCGGGCAACGTTATTGATCTCTGCCCCGTCGGGGCTCTGACGGGCA
AGACCTACTCCTTCTCCTCTTCCTCCGTCCCTTCATCCTCCTCCTCCTCC
GCCACGGCCTCCTCCACCCTGGCCGCCCGTGCTGCCGCGCGTCCCTTACC
AGAACTTTCCACTGCTGCTGCTGCTGCTACTGCTGGCACGTCTGCTCCCT
CTTGCACGCGAGGGGCTGCTGCCATGGGGGTTATGTCTCAACGGGCGCTT
TCATGCTCGTTTACTTCCGTCTTCCACTTGCAGAAGGCCGGCATGAACCC
TCAGGATTTCCAGAAGGTGACCACGTTGTTCAAGCGCTCGGTGATTTTCC
CAATGGCAGCCCTGGTAACGGGCGCAACGGTTGCCACGATTGGTGCGGCC
GTTTAGGGAGGAAGGGAGAGAAGGGTGGGCTTTGTGTGATATCAATGTGC
GTGTGGGGGGGAAGTATTACGATGGTGACGGAAAATATGTTTGCTCATGT
TTTTGACCCGCCCTTTCAAAGTGGTAACAGACATTTAAGTGGTGATGGTG
GGCGTGGGGGTGGCGGAGGAATGGAAGTGAAGGAGAAGAAGGATGAGAGG
TAATGGTAGGATGATAGGGAAAGGTATCTACGAAGAATGAGCTGATAGCT
TGAAAGGAGATTAAGAGGAAGAAGAAGAAGAAGGAGACAGACGACAACTT
GAAGATTCAGTCAAATGAACTCATGGC
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Coding sequence (CDS) from alignment at scaffold_2:503742..505518+

>mRNA_817 ID=mRNA_817|Name=jgi.p|Nanoce1779_2|574247|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_2:503742..505518+ (Nannochloropsis oceanica)
ATGAGCAACCTTACACGGCTCTTTGTCAATGACATCGAGGTCTTTGTCCC
CCCAAACACGACGGTCTTGGAGGCGGCCGAGAAAGTGGGCGTCCAGGTAC
CGCGCTTCTGCTACCACCCCGCCCTCTCCATTGCCGGCAACTGCCGCATG
TGCCTGGTCGAAATTGAGCGCACCCCCAAGCCAGTTGCATCTTGCGCGAT
GCCCGTGATGAAGGACATGAAGGTCTATACCAACAGCCCATTGGTCAAGA
AGGCTCGGGAGGCCGTGCTGGAGTTCTTGTTGCTGAACCATCCTTTGGAC
TGCCCCATTTGTGACCAGGGTGGGGAGTGCGACTTGCAGGACCAGACCAT
GTTGTACGCGTCTGACAGGTCCAGATTCTACGAGTTCAAGCGTGGGGTGG
AGGACAAGAATTTGGGGCCTTTTATCAAGACGATTATGACGCGCTGCATT
CACTGCACACGCTGTGTGCGCTTCGCGGATGAGATTGCCGGAGTCGGGGA
CATGGGCACGACCAACCGGGGAAGGGACACAGAGATCGGCACTTACATTG
GGAAAGCGTTTGAATCCGAGGTCTCGGGCAACGTTATTGATCTCTGCCCC
GTCGGGGCTCTGACGGGCAAGACCTACTCCTTCTCCTCTTCCTCCGTCCC
TTCATCCTCCTCCTCCTCCGCCACGGCCTCCTCCACCCTGGCCGCCCGTG
CTGCCGCGCGTCCCTTACCAGAACTTTCCACTGCTGCTGCTGCTGCTACT
GCTGGCACGTCTGCTCCCTCTTGCACGCGAGGGGCTGCTGCCATGGGGGT
TATGTCTCAACGGGCGCTTTCATGCTCGTTTACTTCCGTCTTCCACTTGC
AGAAGGCCGGCATGAACCCTCAGGATTTCCAGAAGGTGACCACGTTGTTC
AAGCGCTCGGTGATTTTCCCAATGGCAGCCCTGGTAACGGGCGCAACGGT
TGCCACGATTGGTGCGGCCGTTTAGATGAGCAACCTTACACGGCTCTTTG
TCAATGACATCGAGGTCTTTGTCCCCCCAAACACGACGGTCTTGGAGGCG
GCCGAGAAAGTGGGCGTCCAGGTACCGCGCTTCTGCTACCACCCCGCCCT
CTCCATTGCCGGCAACTGCCGCATGTGCCTGGTCGAAATTGAGCGCACCC
CCAAGCCAGTTGCATCTTGCGCGATGCCCGTGATGAAGGACATGAAGGTC
TATACCAACAGCCCATTGGTCAAGAAGGCTCGGGAGGCCGTGCTGGAGTT
CTTGTTGCTGAACCATCCTTTGGACTGCCCCATTTGTGACCAGGGTGGGG
AGTGCGACTTGCAGGACCAGACCATGTTGTACGCGTCTGACAGGTCCAGA
TTCTACGAGTTCAAGCGTGGGGTGGAGGACAAGAATTTGGGGCCTTTTAT
CAAGACGATTATGACGCGCTGCATTCACTGCACACGCTGTGTGCGCTTCG
CGGATGAGATTGCCGGAGTCGGGGACATGGGCACGACCAACCGGGGAAGG
GACACAGAGATCGGCACTTACATTGGGAAAGCGTTTGAATCCGAGGTCTC
GGGCAACGTTATTGATCTCTGCCCCGTCGGGGCTCTGACGGGCAAGACCT
ACTCCTTCTCCTCTTCCTCCGTCCCTTCATCCTCCTCCTCCTCCGCCACG
GCCTCCTCCACCCTGGCCGCCCGTGCTGCCGCGCGTCCCTTACCAGAACT
TTCCACTGCTGCTGCTGCTGCTACTGCTGGCACGTCTGCTCCCTCTTGCA
CGCGAGGGGCTGCTGCCATGGGGGTTATGTCTCAACGGGCGCTTTCATGC
TCGTTTACTTCCGTCTTCCACTTGCAGAAGGCCGGCATGAACCCTCAGGA
TTTCCAGAAGGTGACCACGTTGTTCAAGCGCTCGGTGATTTTCCCAATGG
CAGCCCTGGTAACGGGCGCAACGGTTGCCACGATTGGTGCGGCCGTTTAG
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Synonyms
Publications