jgi.p|Nanoce1779_2|602709, mRNA_8169 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602709
Unique NamemRNA_8169
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1557
Alignment locationscaffold_25:322739..324503 +

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Properties
Property NameValue
TranscriptId602795
TrackFilteredModels2
ProteinId602709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:322739..324503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602709gene_8169Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602709mRNA_8169-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8169CDS_8169Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8169 ID=mRNA_8169|Name=jgi.p|Nanoce1779_2|602709|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
AGTCGCTGCCTCTGACGACAGATAGGCCCAAAGACTCGCCAGAAGCCAGC
GTTTGTTTCCTTTTTGATTTGTGCTTTTAGGGGCTGCATGGCTTTCTCAT
TGTGACACAGTCAGTGTAAGTAGTCTGTGTTTATTCGTAGTTGAGGGCCC
AGTGGCATGTGCTTCCAAGCTAGATTGGGGTGTCCAAAAGCACTGTCGAG
ACTTCCCCTAAATTCCCCGCTTTCCCTCGCTCCCTCCTTCCCAGGACACA
AACAGCCACGATCCCTGCCCCTTGGCTCTGCACATCACAAGACGGGCTCA
CACCATACAAGGCTGGCGGCCGTAAAAGGAGGACTGCGGTGGCTTTTTGG
GGTCTTCCCGCGGCCAGCCACCACCAACATTTCCACCGCGGCGACCCAAA
GCAATGTGGTCAGCAATGGCAACAGGAGAAAAAGGCCACGACAAGGGCCG
CTGCCGCCACTGCCATTGCCATTGCGGACGAATGCAAGAGGACACAATGT
CAGCAAAGTGCAGTTGCTGCAAGGGATCAGACCAAAACTAATGTCTGCCT
GCGGGCGGCTTGCGTTGGCGCACTTTTCGTCCTCGTCCTCATTCTCGTCC
TCATCTTCCTGTGCTTCTTCCGAAATCACACACCCGTCATTACAATCACC
GCTGTCCGCGTCAAGAGAGGAATTGCTGGCGGGCGGCGAGCCGGAACCGC
CAGGCGAGTCGGAATGCTGTGGGAATGGCTGCGACGACTGCGTGTGGATT
GAATACTGGGAAAGACTAGAGGATTACAAACGAGCAAAGGCTCAGGTGGA
GGATATAGTAGCAGCAACAGCAGCAGCAATAACAAAAGTTTTAATCGATA
AGGAGGGACGCGGAGAGGGAGAGACGATGGGGGCGTGTGAACCAGAAGCT
GTAGCAGCAGCAGCAGCAGTAGCTGCGAAGTCCTCGATACCAGCACGAGT
AAAAGGGAGGAAAGATGATGACTGAGTGCCCCATTTATTGTGTCAAATTG
TTAATGCTAGGGTCACATGTATAATAAAGAATCCATACATACGAACAACG
AATGATCTCATAGAAGCGTAAGCGCTACAGCAGAGATAATCCATACACCA
CAAAGAGGGAATAGAACGGGAACATATATCCACTAGCCACACAAACATTA
TGCCATATGTTCTTAATTGCGTTCAATCTCATCAGTGAGTGTCTCATACC
GATGAAGACAATAAATCCAGGAGGAACAAAGACGCGAGACCCCCAGTGTG
CGGCCAGAAGCCAGGCCGCTGACGACTGCAGGCCGCACACTATGGAGGAA
GATGAGTATTTTACGATGGAAGCTCGGCGAATGTGAGCGTGCGCACTCTG
CACACTGTCAAACAGATACAAGGAAGGATGAAAAACGACGGCAGCGCAAT
GCAAGGGCGGCGTGGATGTGTGAAAAGGCGTTTTCAGGGAGCAAAAGTGC
CGAGACCAGGATGGTGGGCAAAACGCGGACAGCACCTAGAGGCTCAAGGC
ACATGACACAATGAGAATTAGCCATGAGACAAACGAATCGCGAAAGATTT
CAAAGTA
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protein sequence of jgi.p|Nanoce1779_2|602709

>mRNA_8169-protein ID=mRNA_8169-protein|Name=jgi.p|Nanoce1779_2|602709|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MCFQARLGCPKALSRLPLNSPLSLAPSFPGHKQPRSLPLGSAHHKTGSHH
TRLAAVKGGLRWLFGVFPRPATTNISTAATQSNVVSNGNRRKRPRQGPLP
PLPLPLRTNARGHNVSKVQLLQGIRPKLMSACGRLALAHFSSSSSFSSSS
SCASSEITHPSLQSPLSASREELLAGGEPEPPGESECCGNGCDDCVWIEY
WERLEDYKRAKAQVEDIVAATAAAITKVLIDKEGRGEGETMGACEPEAVA
AAAAVAAKSSIPARVKGRKDDD*
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mRNA from alignment at scaffold_25:322739..324503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8169 ID=mRNA_8169|Name=jgi.p|Nanoce1779_2|602709|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at scaffold_25:322739..324503+ (Nannochloropsis oceanica)
AGTCGCTGCCTCTGACGACAGATAGGCCCAAAGACTCGCCAGAAGCCAGC
GTTTGTTTCCTTTTTGATTTGTGCTTTTAGGGGCTGCATGGCTTTCTCAT
TGTGACACAGTCAGTGTAAGTAGTCTGTGTTTATTCGTAGTTGAGGGCCC
AGTGGCATGTGCTTCCAAGCTAGATTGGGGTGTCCAAAAGCACTGTCGAG
ACTTCCCCTAAATTCCCCGCTTTCCCTCGCTCCCTCCTTCCCAGGACACA
AACAGCCACGATCCCTGCCCCTTGGCTCTGCACATCACAAGACGGGCTCA
CACCATACAAGGCTGGCGGCCGTAAAAGGAGGACTGCGGTGGCTTTTTGG
GGTCTTCCCGCGGCCAGCCACCACCAACATTTCCACCGCGGCGACCCAAA
GCAATGTGGTCAGCAATGGCAACAGGAGAAAAAGGCCACGACAAGGGCCG
CTGCCGCCACTGCCATTGCCATTGCGGACGAATGCAAGAGGACACAATGT
CAGCAAAGTGCAGTTGCTGCAAGGGATCAGACCAAAACTAATGTCTGCCT
GCGGGCGGCTTGCGTTGGCGCACTTTTCGTCCTCGTCCTCATTCTCGTCC
TCATCTTCCTGTGCTTCTTCCGAAATCACACACCCGTCATTACAATCACC
GCTGTCCGCGTCAAGAGAGGAATTGCTGGCGGGCGGCGAGCCGGAACCGC
CAGGCGAGTCGGAATGCTGTGGGAATGGTAAGCTTTTGCCAGGATTTGAA
GAGGGATGCAGGAGAAAAGGATCAGCGAAGTAGACACTATCATATGGTGT
CCTTCCACTTTTGGATTATTTTTTGGCCAAAAGAGTGCGAGAGAATCTGG
AGAACATCAAACAGACAGACTCAATGCACAATCATTCCTTCGCTGTTTCT
TTCCCTCCCTCCTTCCGTCTCCCCCCCTTCTGCAGGCTGCGACGACTGCG
TGTGGATTGAATACTGGGAAAGACTAGAGGATTACAAACGAGCAAAGGCT
CAGGTGGAGGATATAGTAGCAGCAACAGCAGCAGCAATAACAAAAGTTTT
AATCGATAAGGAGGGACGCGGAGAGGGAGAGACGATGGGGGCGTGTGAAC
CAGAAGCTGTAGCAGCAGCAGCAGCAGTAGCTGCGAAGTCCTCGATACCA
GCACGAGTAAAAGGGAGGAAAGATGATGACTGAGTGCCCCATTTATTGTG
TCAAATTGTTAATGCTAGGGTCACATGTATAATAAAGAATCCATACATAC
GAACAACGAATGATCTCATAGAAGCGTAAGCGCTACAGCAGAGATAATCC
ATACACCACAAAGAGGGAATAGAACGGGAACATATATCCACTAGCCACAC
AAACATTATGCCATATGTTCTTAATTGCGTTCAATCTCATCAGTGAGTGT
CTCATACCGATGAAGACAATAAATCCAGGAGGAACAAAGACGCGAGACCC
CCAGTGTGCGGCCAGAAGCCAGGCCGCTGACGACTGCAGGCCGCACACTA
TGGAGGAAGATGAGTATTTTACGATGGAAGCTCGGCGAATGTGAGCGTGC
GCACTCTGCACACTGTCAAACAGATACAAGGAAGGATGAAAAACGACGGC
AGCGCAATGCAAGGGCGGCGTGGATGTGTGAAAAGGCGTTTTCAGGGAGC
AAAAGTGCCGAGACCAGGATGGTGGGCAAAACGCGGACAGCACCTAGAGG
CTCAAGGCACATGACACAATGAGAATTAGCCATGAGACAAACGAATCGCG
AAAGATTTCAAAGTA
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Coding sequence (CDS) from alignment at scaffold_25:322739..324503+

>mRNA_8169 ID=mRNA_8169|Name=jgi.p|Nanoce1779_2|602709|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_25:322739..324503+ (Nannochloropsis oceanica)
ATGTGCTTCCAAGCTAGATTGGGGTGTCCAAAAGCACTGTCGAGACTTCC
CCTAAATTCCCCGCTTTCCCTCGCTCCCTCCTTCCCAGGACACAAACAGC
CACGATCCCTGCCCCTTGGCTCTGCACATCACAAGACGGGCTCACACCAT
ACAAGGCTGGCGGCCGTAAAAGGAGGACTGCGGTGGCTTTTTGGGGTCTT
CCCGCGGCCAGCCACCACCAACATTTCCACCGCGGCGACCCAAAGCAATG
TGGTCAGCAATGGCAACAGGAGAAAAAGGCCACGACAAGGGCCGCTGCCG
CCACTGCCATTGCCATTGCGGACGAATGCAAGAGGACACAATGTCAGCAA
AGTGCAGTTGCTGCAAGGGATCAGACCAAAACTAATGTCTGCCTGCGGGC
GGCTTGCGTTGGCGCACTTTTCGTCCTCGTCCTCATTCTCGTCCTCATCT
TCCTGTGCTTCTTCCGAAATCACACACCCGTCATTACAATCACCGCTGTC
CGCGTCAAGAGAGGAATTGCTGGCGGGCGGCGAGCCGGAACCGCCAGGCG
AGTCGGAATGCTGTGGGAATGGCTGCGACGACTGCGTGTGGATTGAATAC
TGGGAAAGACTAGAGGATTACAAACGAGCAAAGGCTCAGGTGGAGGATAT
AGTAGCAGCAACAGCAGCAGCAATAACAAAAGTTTTAATCGATAAGGAGG
GACGCGGAGAGGGAGAGACGATGGGGGCGTGTGAACCAGAAGCTGTAGCA
GCAGCAGCAGCAGTAGCTGCGAAGTCCTCGATACCAGCACGAGTAAAAGG
GAGGAAAGATGATGACTGAATGTGCTTCCAAGCTAGATTGGGGTGTCCAA
AAGCACTGTCGAGACTTCCCCTAAATTCCCCGCTTTCCCTCGCTCCCTCC
TTCCCAGGACACAAACAGCCACGATCCCTGCCCCTTGGCTCTGCACATCA
CAAGACGGGCTCACACCATACAAGGCTGGCGGCCGTAAAAGGAGGACTGC
GGTGGCTTTTTGGGGTCTTCCCGCGGCCAGCCACCACCAACATTTCCACC
GCGGCGACCCAAAGCAATGTGGTCAGCAATGGCAACAGGAGAAAAAGGCC
ACGACAAGGGCCGCTGCCGCCACTGCCATTGCCATTGCGGACGAATGCAA
GAGGACACAATGTCAGCAAAGTGCAGTTGCTGCAAGGGATCAGACCAAAA
CTAATGTCTGCCTGCGGGCGGCTTGCGTTGGCGCACTTTTCGTCCTCGTC
CTCATTCTCGTCCTCATCTTCCTGTGCTTCTTCCGAAATCACACACCCGT
CATTACAATCACCGCTGTCCGCGTCAAGAGAGGAATTGCTGGCGGGCGGC
GAGCCGGAACCGCCAGGCGAGTCGGAATGCTGTGGGAATGGCTGCGACGA
CTGCGTGTGGATTGAATACTGGGAAAGACTAGAGGATTACAAACGAGCAA
AGGCTCAGGTGGAGGATATAGTAGCAGCAACAGCAGCAGCAATAACAAAA
GTTTTAATCGATAAGGAGGGACGCGGAGAGGGAGAGACGATGGGGGCGTG
TGAACCAGAAGCTGTAGCAGCAGCAGCAGCAGTAGCTGCGAAGTCCTCGA
TACCAGCACGAGTAAAAGGGAGGAAAGATGATGACTGA
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Synonyms
Publications