jgi.p|Nanoce1779_2|203684, mRNA_8164 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|203684
Unique NamemRNA_8164
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_25:306402..307797 -

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Properties
Property NameValue
TranscriptId203770
TrackFilteredModels2
ProteinId203684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:306402..307797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|203684gene_8164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|203684mRNA_8164-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8164CDS_8164Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8164 ID=mRNA_8164|Name=jgi.p|Nanoce1779_2|203684|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
CTTATTCCAGCCGTAGACAAGCATGTGGTCGTCCTAAAAAAGAGCGGCGC
CCCGGCCCCGTCTATCCTCCTCTGACCGCATCTCGGACACGCTATACCCG
CACCCTACGATGGTAAAGGATAAGGCGTCGTCCTTCCTGCGCGTTGGCAG
CGGCAGTGGAAGCTCCAGAAGCAGCAATCGCAGCAACAGCAACAACAGTA
GTAGCAGCAGTAGTCATGGCAGTAGTGGTAGCCGTCGGCTAGGGGTGTCG
TCGTCCTCATCATCTCATGCACAGTGTGAAGGAGGAGCAGCATCACCACC
AAGCTCTAGCACTATGGATGCCAGCGGCGGCAGCAAGAGGAACAGCAGAA
CGTTTGATGCGTTAATGAGTCCACCGCACGGTCCCGGTGCAGCAGCTCTT
CCATCATCAATCCCAGCCGCAGCGTCTAGGACATCGTCGTCGTCCTCTTT
TCGAATACCGAGTCTCGTTGGCCGGTTTCAGCCTTCCGTTCCCTCTTCTC
CTACCTCGTCCTCAGCCAGCGCCAGCACCACTCCTACTGCCAGCGGCCCC
GCAAGCTTGCCTCCTCTTCGTGCTCCTCCTCCTCCTCGTTCACCACCTTC
TACCCTTTCCAACCCCACACCCAGACCATTGTCAGTAGCAGGGGGGGGGG
GAGAAGAAGGAGGAGGAGATGGAGGACCAGGCGGTGAAGGTGTGCGCCCC
TCCTGCCCGGCGCTGTCCTCATCCCAAGGTGGTTGTGTCCTCATTGACAA
AAGAAGGGATCAATGCGAGAGTGAAAAAGACTATGGACGTGCTGGAAAGA
TACGGAGAGTTACGACGCGTAGAGCAGCAACAGGTGCAGCAGTGGGTGGG
GGATGATGGGGAGGTGATGGTAGGGATGGGGAAGGGAGGAGGGAGGGAGA
GCGAAGCAGTCCTCCCGAGTCCCTATCATTGTCACCAACATGAAAGAGAA
GACGAACAAGAACAGGAGAAAGAGGAGGGCGATAAGCAGCAACAGCAGGA
GCACCGACCGCGTCAGCCACATCAGGAGCAGCAGCAGAAGCAACATCAGC
AACAACAACACATGG
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protein sequence of jgi.p|Nanoce1779_2|203684

>mRNA_8164-protein ID=mRNA_8164-protein|Name=jgi.p|Nanoce1779_2|203684|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MVKDKASSFLRVGSGSGSSRSSNRSNSNNSSSSSSHGSSGSRRLGVSSSS
SSHAQCEGGAASPPSSSTMDASGGSKRNSRTFDALMSPPHGPGAAALPSS
IPAAASRTSSSSSFRIPSLVGRFQPSVPSSPTSSSASASTTPTASGPASL
PPLRAPPPPRSPPSTLSNPTPRPLSVAGGGGEEGGGDGGPGGEGVRPSCP
ALSSSQGGCVLIDKRRDQCESEKDYGRAGKIRRVTTRRAATGAAVGGG*
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mRNA from alignment at scaffold_25:306402..307797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8164 ID=mRNA_8164|Name=jgi.p|Nanoce1779_2|203684|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp|location=Sequence derived from alignment at scaffold_25:306402..307797- (Nannochloropsis oceanica)
CTTATTCCAGCCGTAGACAAGCATGTGGTCGTCCTAAAAAAGAGCGGCGC
CCCGGCCCCGTCTATCCTCCTCTGACCGCATCTCGGACACGCTATACCCG
CACCCTACGATGGTAAAGGATAAGGCGTCGTCCTTCCTGCGCGTTGGCAG
CGGCAGTGGAAGCTCCAGAAGCAGCAATCGCAGCAACAGCAACAACAGTA
GTAGCAGCAGTAGTCATGGCAGTAGTGGTAGCCGTCGGCTAGGGGTGTCG
TCGTCCTCATCATCTCATGCACAGTGTGAAGGAGGAGCAGCATCACCACC
AAGCTCTAGCACTATGGATGCCAGCGGCGGCAGCAAGAGGAACAGCAGAA
CGTTTGATGCGTTAATGAGTCCACCGCACGGTCCCGGTGCAGCAGCTCTT
CCATCATCAATCCCAGCCGCAGCGTCTAGGACATCGTCGTCGTCCTCTTT
TCGAATGTACGTGTGGTGCCACCAATTACGAGAGAAAGGGTGTGATGTTC
ATATACATGCATGAATCACACAGTACTCGCACTCACAACCGCCCTTATCC
AATTTCTCTGTTTCTCTTGATCAGTTTTCATGTCCCCTGCCTCTTCCCGT
ATCTTTATGATCCACGACAAGCGGCTCTTCCTTCCTAGCTCATCCATTGC
CCCCCTCCTCACTTTCCTTTTCCCTCCGTCCTTTTTGTTAGACCGAGTCT
CGTTGGCCGGTTTCAGCCTTCCGTTCCCTCTTCTCCTACCTCGTCCTCAG
CCAGCGCCAGCACCACTCCTACTGCCAGCGGCCCCGCAAGCTTGCCTCCT
CTTCGTGCTCCTCCTCCTCCTCGTTCACCACCTTCTACCCTTTCCAACCC
CACACCCAGACCATTGTCAGTAGCAGGGGGGGGGGGAGAAGAAGGAGGAG
GAGATGGAGGACCAGGCGGTGAAGGTGTGCGCCCCTCCTGCCCGGCGCTG
TCCTCATCCCAAGGTGAGATAGAGAGCAGGGGGAAGGTGGTTGTGTCCTC
ATTGACAAAAGAAGGGATCAATGCGAGAGTGAAAAAGACTATGGACGTGC
TGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACAGGTGCAGCAG
TGGGTGGGGGATGATGGGGAGGTGATGGTAGGGATGGGGAAGGGAGGAGG
GAGGGAGAGCGAAGCAGTCCTCCCGAGTCCCTATCATTGTCACCAACATG
AAAGAGAAGACGAACAAGAACAGGAGAAAGAGGAGGGCGATAAGCAGCAA
CAGCAGGAGCACCGACCGCGTCAGCCACATCAGGAGCAGCAGCAGAAGCA
ACATCAGCAACAACAACAGCAGCTCGAACAGCAACTCCTGTGTCTACAGC
AAGAGCATCGATCCCTCCGGACGCAATTTCACGCCGTTCAGCATGG
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Coding sequence (CDS) from alignment at scaffold_25:306402..307797-

>mRNA_8164 ID=mRNA_8164|Name=jgi.p|Nanoce1779_2|203684|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at scaffold_25:306402..307797- (Nannochloropsis oceanica)
GTGGTTGTGTCCTCATTGACAAAAGAAGGGATCAATGCGAGAGTGAAAAA
GACTATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGC
AACAGGTGCAGCAGTGGGTGGGGGATGAACCGAGTCTCGTTGGCCGGTTT
CAGCCTTCCGTTCCCTCTTCTCCTACCTCGTCCTCAGCCAGCGCCAGCAC
CACTCCTACTGCCAGCGGCCCCGCAAGCTTGCCTCCTCTTCGTGCTCCTC
CTCCTCCTCGTTCACCACCTTCTACCCTTTCCAACCCCACACCCAGACCA
TTGTCAGTAGCAGGGGGGGGGGGAGAAGAAGGAGGAGGAGATGGAGGACC
AGGCGGTGAAGGTGTGCGCCCCTCCTGCCCGGCGCTGTCCTCATCCCAAG
ATGGTAAAGGATAAGGCGTCGTCCTTCCTGCGCGTTGGCAGCGGCAGTGG
AAGCTCCAGAAGCAGCAATCGCAGCAACAGCAACAACAGTAGTAGCAGCA
GTAGTCATGGCAGTAGTGGTAGCCGTCGGCTAGGGGTGTCGTCGTCCTCA
TCATCTCATGCACAGTGTGAAGGAGGAGCAGCATCACCACCAAGCTCTAG
CACTATGGATGCCAGCGGCGGCAGCAAGAGGAACAGCAGAACGTTTGATG
CGTTAATGAGTCCACCGCACGGTCCCGGTGCAGCAGCTCTTCCATCATCA
ATCCCAGCCGCAGCGTCTAGGACATCGTCGTCGTCCTCTTTTCGAATGTG
GTTGTGTCCTCATTGACAAAAGAAGGGATCAATGCGAGAGTGAAAAAGAC
TATGGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAAC
AGGTGCAGCAGTGGGTGGGGGATGAACCGAGTCTCGTTGGCCGGTTTCAG
CCTTCCGTTCCCTCTTCTCCTACCTCGTCCTCAGCCAGCGCCAGCACCAC
TCCTACTGCCAGCGGCCCCGCAAGCTTGCCTCCTCTTCGTGCTCCTCCTC
CTCCTCGTTCACCACCTTCTACCCTTTCCAACCCCACACCCAGACCATTG
TCAGTAGCAGGGGGGGGGGGAGAAGAAGGAGGAGGAGATGGAGGACCAGG
CGGTGAAGGTGTGCGCCCCTCCTGCCCGGCGCTGTCCTCATCCCAAGATG
GTAAAGGATAAGGCGTCGTCCTTCCTGCGCGTTGGCAGCGGCAGTGGAAG
CTCCAGAAGCAGCAATCGCAGCAACAGCAACAACAGTAGTAGCAGCAGTA
GTCATGGCAGTAGTGGTAGCCGTCGGCTAGGGGTGTCGTCGTCCTCATCA
TCTCATGCACAGTGTGAAGGAGGAGCAGCATCACCACCAAGCTCTAGCAC
TATGGATGCCAGCGGCGGCAGCAAGAGGAACAGCAGAACGTTTGATGCGT
TAATGAGTCCACCGCACGGTCCCGGTGCAGCAGCTCTTCCATCATCAATC
CCAGCCGCAGCGTCTAGGACATCGTCGTCGTCCTCTTTTCGAATGTGGTT
GTGTCCTCATTGACAAAAGAAGGGATCAATGCGAGAGTGAAAAAGACTAT
GGACGTGCTGGAAAGATACGGAGAGTTACGACGCGTAGAGCAGCAACAGG
TGCAGCAGTGGGTGGGGGATGAACCGAGTCTCGTTGGCCGGTTTCAGCCT
TCCGTTCCCTCTTCTCCTACCTCGTCCTCAGCCAGCGCCAGCACCACTCC
TACTGCCAGCGGCCCCGCAAGCTTGCCTCCTCTTCGTGCTCCTCCTCCTC
CTCGTTCACCACCTTCTACCCTTTCCAACCCCACACCCAGACCATTGTCA
GTAGCAGGGGGGGGGGGAGAAGAAGGAGGAGGAGATGGAGGACCAGGCGG
TGAAGGTGTGCGCCCCTCCTGCCCGGCGCTGTCCTCATCCCAAGATGGTA
AAGGATAAGGCGTCGTCCTTCCTGCGCGTTGGCAGCGGCAGTGGAAGCTC
CAGAAGCAGCAATCGCAGCAACAGCAACAACAGTAGTAGCAGCAGTAGTC
ATGGCAGTAGTGGTAGCCGTCGGCTAGGGGTGTCGTCGTCCTCATCATCT
CATGCACAGTGTGAAGGAGGAGCAGCATCACCACCAAGCTCTAGCACTAT
GGATGCCAGCGGCGGCAGCAAGAGGAACAGCAGAACGTTTGATGCGTTAA
TGAGTCCACCGCACGGTCCCGGTGCAGCAGCTCTTCCATCATCAATCCCA
GCCGCAGCGTCTAGGACATCGTCGTCGTCCTCTTTTCGAAT
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Synonyms
Publications