jgi.p|Nanoce1779_2|602684, mRNA_8163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602684
Unique NamemRNA_8163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1741
Alignment locationscaffold_25:305790..307687 +

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Properties
Property NameValue
TranscriptId602770
TrackFilteredModels2
ProteinId602684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:305790..307687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602684gene_8163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602684mRNA_8163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8163CDS_8163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8163 ID=mRNA_8163|Name=jgi.p|Nanoce1779_2|602684|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp
ACATGCCCAGCTTCCCCACCCTCCCTCCAGACCTCGTCGGCGCCATGGCC
AGCGGTCCTCCCTCCCTTCCTCCACCTCCCTCCCTCCTGCTCTCCCTCCC
CATCCTCCTCCTGCCTCCTGCTGCCGCAGCAGCAGCTACCATCCCTTCAT
ACTCGATCGCTCGTCTCCTTATTTCCTTCAGCTCTTCCCGCAGGCGTTCG
TTCTCTTTCAGGAGCCCTTGCTCTCTCTCCAACACCAGCCGCATCATCCC
TTCAGTCCTCCTACATCTCTCCTCCCACACCCGCTGTTGCTGCTCGGCAT
CCTCCTTTACTTCCTCCACCCGGCCCAGGGCTCGGTTTAAGGTGTCTATC
TCCTCCTCGCATTCCAAACAGTGCGCTTCCAGGTTCTCGACGAGTTCTGT
ACATCGGTCCAATTCTTCGTTCGCCCTGGCCGCTTCCTCTCCCAGCACAC
TTGCGCCATGCTGAACGGCGTGAAATTGCGTCCGGAGGGATCGATGCTCT
TGCTGTAGACACAGGAGTTGCTGTTCGAGCTGCTGTTGTTGTTGCTGATG
TTGCTTCTGCTGCTGCTCCTGATGTGGCTGACGCGGTCGGTGCTCCTGCT
GTTGCTGCTTATCGCCCTCCTCTTTCTCCTGTTCTTGTTCGTCTTCTCTT
TCATGTTGGTGACAATGATAGGGACTCGGGAGGACTGCTTCGCTCTCCCT
CCCTCCTCCCTTCCCCATCCCTACCATCACCTCCCCATCATCCCCCACCC
ACTGCTGCACCTGTTGCTGCTCTACGCGTCGTAACTCTCCGTATCTTTCC
AGCACGTCCATAGTCTTTTTCACTCTCGCATTGATCCCTTCTTTTGTCAA
TGAGGACACAACCACCTTCCCCCTGCTCTCTATCTCACCTTGGGATGAGG
ACAGCGCCGGGCAGGAGGGGCGCACACCTTCACCGCCTGGTCCTCCATCT
CCTCCTCCTTCTTCTCCCCCCCCCCCTGCTACTGACAATGGTCTGGGTGT
GGGGTTGGAAAGGGTAGAAGGTGGTGAACGAGGAGGAGGAGGAGCACGAA
GAGGAGGCAAGCTTGCGGGGCCGCTGGCAGTAGGAGTGGTGCTGGCGCTG
GCTGAGGACGAGGTAGGAGAAGAGGGAACGGAAGGCTGAAACCGGCCAAC
GAGACTCGGTCTAACAAAAAGGACGGAGGGAAAAGGAAAGTGAGGAGGGG
GGCAATGGATGAGCTAGGAAGGAAGAGCCGCTTGTCGTGGATCATAAAGA
TACGGGAAGAGGCAGGGGACATGAAAACTGATCAAGAGAAACAGAGAAAT
TGGATAAGGGCGGTTGTGAGTGCGAGTACTGTGTGATTCATGCATGTATA
TGAACATCACACCCTTTCTCTCGTAATTGGTGGCACCACACGTACATTCG
AAAAGAGGACGACGACGATGTCCTAGACGCTGCGGCTGGGATTGATGATG
GAAGAGCTGCTGCACCGGGACCGTGCGGTGGACTCATTAACGCATCAAAC
GTTCTGCTGTTCCTCTTGCTGCCGCCGCTGGCATCCATAGTGCTAGAGCT
TGGTGGTGATGCTGCTCCTCCTTCACACTGTGCATGAGATGATGAGGACG
ACGACACCCCTAGCCGACGGCTACCACTACTGCCATGACTACTGCTGCTA
CTACTGTTGTTGCTGTTGCTGCGATTGCTGCTTCTGGAGCTTCCACTGCC
GCTGCCAACGCGCAGGAAGGACGACGCCTTATCCTTTACCA
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protein sequence of jgi.p|Nanoce1779_2|602684

>mRNA_8163-protein ID=mRNA_8163-protein|Name=jgi.p|Nanoce1779_2|602684|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MPSFPTLPPDLVGAMASGPPSLPPPPSLLLSLPILLLPPAAAAAATIPSY
SIARLLISFSSSRRRSFSFRSPCSLSNTSRIIPSVLLHLSSHTRCCCSAS
SFTSSTRPRARFKVSISSSHSKQCASRFSTSSVHRSNSSFALAASSPSTL
APC*
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mRNA from alignment at scaffold_25:305790..307687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8163 ID=mRNA_8163|Name=jgi.p|Nanoce1779_2|602684|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp|location=Sequence derived from alignment at scaffold_25:305790..307687+ (Nannochloropsis oceanica)
ACATGCCCAGCTTCCCCACCCTCCCTCCAGACCTCGTCGGCGCCATGGCC
AGCGGTCCTCCCTCCCTTCCTCCACCTCCCTCCCTCCTGCTCTCCCTCCC
CATCCTCCTCCTGCCTCCTGCTGCCGCAGCAGCAGCTACCATCCCTTCAT
ACTCGATCGCTCGTCTCCTTATTTCCTTCAGCTCTTCCCGCAGGCGTTCG
TTCTCTTTCAGGAGCCCTTGCTCTCTCTCCAACACCAGCCGCATCATCCC
TTCAGTCCTCCTACATCTCTCCTCCCACACCCGCTGTTGCTGCTCGGCAT
CCTCCTTTACTTCCTCCACCCGGCCCAGGGCTCGGTTTAAGGTGTCTATC
TCCTCCTCGCATTCCAAACAGTGCGCTTCCAGGTTCTCGACGAGTTCTGT
ACATTGAGGGTCAAGAGGGAGGAAGGAAGGGCTGGTGAGAAAGAAATCCC
GTGTACGCCATGTGGTGTGGTTGATTCAGTCAAAGGCAGAACACACATGC
TCCTCCCTTCCTCCCTGCCACCTTTCTTCTCTTCCTCCCTACCTCCCTCG
CACCTGTACATCGGTCCAATTCTTCGTTCGCCCTGGCCGCTTCCTCTCCC
AGCACACTTGCGCCATGCTGAACGGCGTGAAATTGCGTCCGGAGGGATCG
ATGCTCTTGCTGTAGACACAGGAGTTGCTGTTCGAGCTGCTGTTGTTGTT
GCTGATGTTGCTTCTGCTGCTGCTCCTGATGTGGCTGACGCGGTCGGTGC
TCCTGCTGTTGCTGCTTATCGCCCTCCTCTTTCTCCTGTTCTTGTTCGTC
TTCTCTTTCATGTTGGTGACAATGATAGGGACTCGGGAGGACTGCTTCGC
TCTCCCTCCCTCCTCCCTTCCCCATCCCTACCATCACCTCCCCATCATCC
CCCACCCACTGCTGCACCTGTTGCTGCTCTACGCGTCGTAACTCTCCGTA
TCTTTCCAGCACGTCCATAGTCTTTTTCACTCTCGCATTGATCCCTTCTT
TTGTCAATGAGGACACAACCACCTTCCCCCTGCTCTCTATCTCACCTTGG
GATGAGGACAGCGCCGGGCAGGAGGGGCGCACACCTTCACCGCCTGGTCC
TCCATCTCCTCCTCCTTCTTCTCCCCCCCCCCCTGCTACTGACAATGGTC
TGGGTGTGGGGTTGGAAAGGGTAGAAGGTGGTGAACGAGGAGGAGGAGGA
GCACGAAGAGGAGGCAAGCTTGCGGGGCCGCTGGCAGTAGGAGTGGTGCT
GGCGCTGGCTGAGGACGAGGTAGGAGAAGAGGGAACGGAAGGCTGAAACC
GGCCAACGAGACTCGGTCTAACAAAAAGGACGGAGGGAAAAGGAAAGTGA
GGAGGGGGGCAATGGATGAGCTAGGAAGGAAGAGCCGCTTGTCGTGGATC
ATAAAGATACGGGAAGAGGCAGGGGACATGAAAACTGATCAAGAGAAACA
GAGAAATTGGATAAGGGCGGTTGTGAGTGCGAGTACTGTGTGATTCATGC
ATGTATATGAACATCACACCCTTTCTCTCGTAATTGGTGGCACCACACGT
ACATTCGAAAAGAGGACGACGACGATGTCCTAGACGCTGCGGCTGGGATT
GATGATGGAAGAGCTGCTGCACCGGGACCGTGCGGTGGACTCATTAACGC
ATCAAACGTTCTGCTGTTCCTCTTGCTGCCGCCGCTGGCATCCATAGTGC
TAGAGCTTGGTGGTGATGCTGCTCCTCCTTCACACTGTGCATGAGATGAT
GAGGACGACGACACCCCTAGCCGACGGCTACCACTACTGCCATGACTACT
GCTGCTACTACTGTTGTTGCTGTTGCTGCGATTGCTGCTTCTGGAGCTTC
CACTGCCGCTGCCAACGCGCAGGAAGGACGACGCCTTATCCTTTACCA
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Coding sequence (CDS) from alignment at scaffold_25:305790..307687+

>mRNA_8163 ID=mRNA_8163|Name=jgi.p|Nanoce1779_2|602684|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_25:305790..307687+ (Nannochloropsis oceanica)
ATGCCCAGCTTCCCCACCCTCCCTCCAGACCTCGTCGGCGCCATGGCCAG
CGGTCCTCCCTCCCTTCCTCCACCTCCCTCCCTCCTGCTCTCCCTCCCCA
TCCTCCTCCTGCCTCCTGCTGCCGCAGCAGCAGCTACCATCCCTTCATAC
TCGATCGCTCGTCTCCTTATTTCCTTCAGCTCTTCCCGCAGGCGTTCGTT
CTCTTTCAGGAGCCCTTGCTCTCTCTCCAACACCAGCCGCATCATCCCTT
CAGTCCTCCTACATCTCTCCTCCCACACCCGCTGTTGCTGCTCGGCATCC
TCCTTTACTTCCTCCACCCGGCCCAGGGCTCGGTTTAAGGTGTCTATCTC
CTCCTCGCATTCCAAACAGTGCGCTTCCAGGTTCTCGACGAGTTCTGTAC
ATCGGTCCAATTCTTCGTTCGCCCTGGCCGCTTCCTCTCCCAGCACACTT
GCGCCATGCTGAATGCCCAGCTTCCCCACCCTCCCTCCAGACCTCGTCGG
CGCCATGGCCAGCGGTCCTCCCTCCCTTCCTCCACCTCCCTCCCTCCTGC
TCTCCCTCCCCATCCTCCTCCTGCCTCCTGCTGCCGCAGCAGCAGCTACC
ATCCCTTCATACTCGATCGCTCGTCTCCTTATTTCCTTCAGCTCTTCCCG
CAGGCGTTCGTTCTCTTTCAGGAGCCCTTGCTCTCTCTCCAACACCAGCC
GCATCATCCCTTCAGTCCTCCTACATCTCTCCTCCCACACCCGCTGTTGC
TGCTCGGCATCCTCCTTTACTTCCTCCACCCGGCCCAGGGCTCGGTTTAA
GGTGTCTATCTCCTCCTCGCATTCCAAACAGTGCGCTTCCAGGTTCTCGA
CGAGTTCTGTACATCGGTCCAATTCTTCGTTCGCCCTGGCCGCTTCCTCT
CCCAGCACACTTGCGCCATGCTGA
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Synonyms
Publications