jgi.p|Nanoce1779_2|602681, mRNA_8162 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602681
Unique Name	mRNA_8162
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1930
Alignment location	scaffold_25:303335..305264 -

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Properties


Property Name	Value
TranscriptId	602767
Track	FilteredModels2
ProteinId	602681

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:303335..305264 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602681	gene_8162	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602681	mRNA_8162-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8162	CDS_8162	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:303335..305264-
coding sequence from alignment at scaffold_25:303335..305264-

mRNA sequence

>mRNA_8162 ID=mRNA_8162|Name=jgi.p|Nanoce1779_2|602681|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
GGGAAGGACTCTTTATGACACTATACGCCCATCCTGATTTTGAAGCTGAG
TTCGGGGGGTTGGTCGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGG
TGGTGGTAGGAGTACTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTT
CTTCGAAAACAGCATCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTC
CTTCATCCGGCTTCCCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTA
CATCGCCTTTGTCTGCACTGGCCGTCTGGACGACCCAGTCCACATGCACG
CCCTCCATCCCTTCTTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATC
AGGGCGGGCCGGGGGAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATT
AGCTGGGCTCCCGTGCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGA
GGGGCCGGGAGGAGGGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTT
ATGTCTAGGGCGATGCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGG
TCGAGCAGTCGAAGGAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTC
AACCATCGTTGGAGTTACCGCCATTGACGAACTTCTTGTTCGATTCATCG
TCCTTGTCTGGCGAAGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAA
TGGTGGGGATGACATAGAGTATCTGGTACCCTGATTATACGGTGTAAATA
AAATAGCGGCGACGCAGTTTTGTACATGCATATCAACAGTTGACGTAAAT
GTGGAAGAAGAAAAATGCAAAAATTAATAAAGCAGAAAGCAAGCAAATAA
AATTAGAAAGACGAGTGCGTAGTCCGGGAAAGTCACCATCCTCAATCTTT
TACGAGTACTTATACCTGAATCATGTTGTGCATCTTTTTATTTTACCGAC
AGTAAAGTGGATTAGGGGGTGTTTAAACAGCCTCATCGCCGACGAACCCC
CTGTAGGAAGGACGGCCACCTCAACGCTTTTCTGCGGCTTTCATGAACCG
AATCGCGCTCCCCGTACAGCTTGTCTCTGTGAGACACTAAGCAATCTGTA
CGCCTCCGAAATCAGTACCGCATGACGGTCATCACCACGTGCCTGCGAAG
TTTGTTGATCTTTTGTACCACCCCTCCCCACGCTTCACCTATGCCTTCTC
ACCATCACACTCAGGCAACGAGAATTTCTTACCCAGCCTCGAGGACCACA
ACGCTTTGCTCACGGTCTCAAGCCCCGAAAGTACGCCTTGGGACTTTACG
AGACGACAATGCCCATCTTCCTCGCATTGACCAACCTCCCCACCCCCGCT
CCGTTACACAGGTTAAAAACCTATGCCGCATCCGCTCCTCCTGGGCTGGC
TGCTCAAGCAGGCCAATATTTTCAACCTTTACGGAGCCATGAAAGCGTAC
GGCTTCCACCGCGTCTACCGTCGACTGCTCGAAGCAAACAACCGGTTGAT
GGACAAGCCGCAGGATAGACAAATCGTGCAGGACACACTTAAGCAGGCTT
TGCGTGCACCTAATCAAGTGGTGCAAATACTCGACGAATCACACACGGTG
GCTTTCCTGGCCCGTTACGCTAAGGAGCTCGCTGCAGACTTGGAGACCAA
TGCGCCACCTTTCTTCGTAAAAGCGGCCAAGGTGGTTTTACAAAAAACTC
CGATGGGAAAATTAGTCGATGTCTTTGCCGAGTGGCAAGACACAAGCCGG
AGCAAGAAGGGGAAGCCTTGAGTCAGCGACGGCTGAAAGCATGTGTACAT
AGCATCGTCATAAATCAGTGGAATGTCATAGAGTTTGAGTATGGAGTGCG
ATAGATTCCTTTGCAAATGCTGCGGGGAGTCTGAGCATGAAGTGTACATA
ACAACAACACAACGAGAAAGACTGAGAGAG

protein sequence of jgi.p|Nanoce1779_2|602681

>mRNA_8162-protein ID=mRNA_8162-protein|Name=jgi.p|Nanoce1779_2|602681|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MTLYAHPDFEAEFGGLVGTVFAEAVSGIGGGRSTASSSSSSSRSSSSKTA
SSESSSPSPSFLLHPASLSDAGPGTTVFYIAFVCTGRLDDPVHMHALHPF
FSAGASIVLFLIRAGRGSQLARIQPLQELAGLPCFEFLVFKKTLQRGREE
GYEREVGALRSFMSRAMPSLGRAIGAGRGRAVEGVAGGGAVASTSQPSLE
LPPLTNFLFDSSSLSGEEQRHQLRHEEENGGDDIEYLVP*

mRNA from alignment at scaffold_25:303335..305264-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8162 ID=mRNA_8162|Name=jgi.p|Nanoce1779_2|602681|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp|location=Sequence derived from alignment at scaffold_25:303335..305264- (Nannochloropsis oceanica)
GGGAAGGACTCTTTATGACACTATACGCCCATCCTGATTTTGAAGCTGAG
TTCGGGGGGTTGGTCGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGG
TGGTGGTAGGAGTACTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTT
CTTCGAAAACAGCATCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTC
CTTCATCCGGCTTCCCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTA
CATCGCCTTTGTCTGCACTGGCCGTCTGGACGACCCAGTCCACATGCACG
CCCTCCATCCCTTCTTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATC
AGGGCGGGCCGGGGGAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATT
AGCTGGGCTCCCGTGCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGA
GGGGCCGGGAGGAGGGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTT
ATGTCTAGGGCGATGCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGG
TCGAGCAGTCGAAGGAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTC
AACCATCGTTGGAGTTACCGCCATTGACGAACTTCTTGTTCGATTCATCG
TCCTTGTCTGGCGAAGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAA
TGGTGGGGATGACATAGAGTATCTGGTACCCTGATTATACGGTGTAAATA
AAATAGCGGCGACGCAGTTTTGTACATGCATATCAACAGTTGACGTAAAT
GTGGAAGAAGAAAAATGCAAAAATTAATAAAGCAGAAAGCAAGCAAATAA
AATTAGAAAGACGAGTGCGTAGTCCGGGAAAGTCACCATCCTCAATCTTT
TACGAGTACTTATACCTGAATCATGTTGTGCATCTTTTTATTTTACCGAC
AGTAAAGTGGATTAGGGGGTGTTTAAACAGCCTCATCGCCGACGAACCCC
CTGTAGGAAGGACGGCCACCTCAACGCTTTTCTGCGGCTTTCATGAACCG
AATCGCGCTCCCCGTACAGCTTGTCTCTGTGAGACACTAAGCAATCTGTA
CGCCTCCGAAATCAGTACCGCATGACGGTCATCACCACGTGCCTGCGAAG
TTTGTTGATCTTTTGTACCACCCCTCCCCACGCTTCACCTATGCCTTCTC
ACCATCACACTCAGGCAACGAGAATTTCTTACCCAGCCTCGAGGACCACA
ACGCTTTGCTCACGGTCTCAAGCCCCGAAAGTACGCCTTGGGACTTTACG
AGACGACAATGCCCATCTTCCTCGCATTGACCAACCTCCCCACCCCCGCT
CCGTTACACAGGTTAAAAACCTATGCCGCATCCGCTCCTCCTGGGCTGGC
TGCTCAAGCAGGCCAATATTTTCAACCTTTACGGAGCCATGAAAGCGTAC
GGCTTCCACCGCGTCTACCGTCGACTGCTCGAAGCAAACAACCGGTTGAT
GGACAAGCCGCAGGATAGACAAATCGTGCAGGACACACTTAAGCAGGCTT
TGCGTGCACCTAATCAAGTGGTGCAAATACTCGACGAATCACACACGGTG
GCTTTCCTGGCCCGTTACGCTAAGGAGCTCGCTGCAGACTTGGAGACCAA
TGCGCCACCTTTCTTCGTAAAAGCGGCCAAGGTGGTTTTACAAAAAACTC
CGATGGGAAAATTAGTCGATGTCTTTGCCGAGTGGCAAGACACAAGCCGG
AGCAAGAAGGGGAAGCCTTGAGTCAGCGACGGCTGAAAGCATGTGTACAT
AGCATCGTCATAAATCAGTGGAATGTCATAGAGTTTGAGTATGGAGTGCG
ATAGATTCCTTTGCAAATGCTGCGGGGAGTCTGAGCATGAAGTGTACATA
ACAACAACACAACGAGAAAGACTGAGAGAG

Coding sequence (CDS) from alignment at scaffold_25:303335..305264-

>mRNA_8162 ID=mRNA_8162|Name=jgi.p|Nanoce1779_2|602681|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_25:303335..305264- (Nannochloropsis oceanica)
ATGACACTATACGCCCATCCTGATTTTGAAGCTGAGTTCGGGGGGTTGGT
CGGGACTGTCTTTGCCGAGGCTGTGTCCGGCATTGGTGGTGGTAGGAGTA
CTGCTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCTTCTTCGAAAACAGCA
TCCTCTGAATCTTCGTCACCCTCGCCCTCCTTCCTCCTTCATCCGGCTTC
CCTTTCCGACGCCGGCCCGGGAACCACCGTCTTTTACATCGCCTTTGTCT
GCACTGGCCGTCTGGACGACCCAGTCCACATGCACGCCCTCCATCCCTTC
TTTTCCGCCGGGGCCTCGATTGTCTTATTCTTGATCAGGGCGGGCCGGGG
GAGTCAGCTGGCGCGCATTCAGCCACTGCAGGAATTAGCTGGGCTCCCGT
GCTTCGAGTTCTTGGTGTTTAAAAAAACGTTGCAGAGGGGCCGGGAGGAG
GGGTATGAGAGGGAGGTAGGAGCGTTGAGGAGTTTTATGTCTAGGGCGAT
GCCATCGTTGGGGAGGGCTATCGGAGCAGGGAGAGGTCGAGCAGTCGAAG
GAGTAGCCGGAGGAGGAGCAGTAGCGTCAACGAGTCAACCATCGTTGGAG
TTACCGCCATTGACGAACTTCTTGTTCGATTCATCGTCCTTGTCTGGCGA
AGAGCAACGCCATCAGCTCAGGCACGAGGAAGAGAATGGTGGGGATGACA
TAGAGTATCTGGTACCCTGA

Synonyms

Publications