jgi.p|Nanoce1779_2|641877, mRNA_8161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641877
Unique NamemRNA_8161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length399
Alignment locationscaffold_25:303494..303892 -

Link to JBrowse

Properties
Property NameValue
TranscriptId641963
TrackFilteredModels2
ProteinId641877
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:303494..303892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641877gene_8161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8161CDS_8161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641877mRNA_8161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8161 ID=mRNA_8161|Name=jgi.p|Nanoce1779_2|641877|organism=Nannochloropsis oceanica|type=mRNA|length=399bp
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|641877

>mRNA_8161-protein ID=mRNA_8161-protein|Name=jgi.p|Nanoce1779_2|641877|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MPHPLLLGWLLKQANIFNLYGAMKAYGFHRVYRRLLEANNRLMDKPQDRQ
IVQDTLKQALRAPNQVVQILDESHTVAFLARYAKELAADLETNAPPFFVK
AAKVVLQKTPMGKLVDVFAEWQDTSRSKKGKP*
back to top

mRNA from alignment at scaffold_25:303494..303892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8161 ID=mRNA_8161|Name=jgi.p|Nanoce1779_2|641877|organism=Nannochloropsis oceanica|type=mRNA|length=399bp|location=Sequence derived from alignment at scaffold_25:303494..303892- (Nannochloropsis oceanica)
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_25:303494..303892-

>mRNA_8161 ID=mRNA_8161|Name=jgi.p|Nanoce1779_2|641877|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_25:303494..303892- (Nannochloropsis oceanica)
ATGCCGCATCCGCTCCTCCTGGGCTGGCTGCTCAAGCAGGCCAATATTTT
CAACCTTTACGGAGCCATGAAAGCGTACGGCTTCCACCGCGTCTACCGTC
GACTGCTCGAAGCAAACAACCGGTTGATGGACAAGCCGCAGGATAGACAA
ATCGTGCAGGACACACTTAAGCAGGCTTTGCGTGCACCTAATCAAGTGGT
GCAAATACTCGACGAATCACACACGGTGGCTTTCCTGGCCCGTTACGCTA
AGGAGCTCGCTGCAGACTTGGAGACCAATGCGCCACCTTTCTTCGTAAAA
GCGGCCAAGGTGGTTTTACAAAAAACTCCGATGGGAAAATTAGTCGATGT
CTTTGCCGAGTGGCAAGACACAAGCCGGAGCAAGAAGGGGAAGCCTTGA
back to top
Synonyms
Publications