jgi.p|Nanoce1779_2|602676, mRNA_8160 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602676
Unique NamemRNA_8160
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1904
Alignment locationscaffold_25:301268..303334 -

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Properties
Property NameValue
TranscriptId602762
TrackFilteredModels2
ProteinId602676
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:301268..303334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602676gene_8160Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602676mRNA_8160-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8160CDS_8160Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8160 ID=mRNA_8160|Name=jgi.p|Nanoce1779_2|602676|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
TAATTTCTTCCGTTCAGTTTCTTGTTTTTTTTTCTTGGCTTATGGAACTG
TGTGTCCCTTTCTCTCACGGTCACTCACTCTCACTCGTTGTCGTTTCCAC
TCAAGTGCATTCTTTTTCGCTCTGTCTCGTGATTTCAAACAGACGGACAG
CCGGCTTGAAAGTGGGCTGAAAGAAGGACTTTGCTAGCTCCTCAAGACTG
ATTATTTGGTATCTATCTGTATAAATAAGTATGAAATCTTGAGGACAATT
CCATGTTCATTTTTGTGTCTCCGACCGCTTTTATTTATCACACACACTTT
TTCCAATTCAAGTGTCACATGCTCCTTCCCTATCTCTCCACATGCCAAGA
TCTGCTTTCTTCTTCTATTTCTTCCATCTCCTGAAAGAGAAGGAGATCCT
CGAGGCAAAATGCGCTGCGCTGAATCTTGTGTCGATTGTTATAAGGTTTG
TGTGTGTGTGTGTGTGCCAGGCTTTCCCACCTATCCGACGCTATCGCTTG
TGCTTCTTCTACTGTTCACTCTCTTTCTACACCCTCCTCCTTCCATATTT
CCTTTCCCTCCTTGTATCCACTCTCTCTTCGCGCTTTCCCACTTGCCCTC
ACCACAATCATTGCCTTAGAACTAGTCCACTCAGTGCCTTGTTTTCCCTT
TCCCCCCTTCTCCATCTTCTTTTTCTTCCTCTTTTTATCTTTATTTTATT
TCAATTCGCTTCTCGCTCTGGGCTTTTCCCCAGCCATGAATCATCCCCCC
CCGCTTTTTTCATCACCTCTGATTCTTCGTCCCGCCACATACGCATAGAC
AAACAGATACACGGACGCGCTCGGGGCAGGAAAAGAGGAAGGGAGGCAAG
CAGATGGGGAGGGAGGGAGTGAGGGGGCAACCTCCCTTCAACTACCCCTC
CCTCAACAAGCTCCTGAAGAACTGATGGATGCCATTCGTATTCAGCGTCA
TGAATGTGACCGAGATGTAACTCTGATGGTCCTCGTACCTCTCGACATCT
CCCCCCGCAAGGCGGTACAGCTTCTCCTTCTCCGCCTCGCCCTCCTCTTG
CTCGGCTTGCTGCCCTCCCTCCCTCCCCTCTTCCCCCTCGGCCTCTTCGG
GGCAGATGTGGAAGCCGATGGTGACGGTCATGCTCTCCCCGTCGTAAGAG
GGGCACATCAAGGGAGACCAGTGGTCGAGAAAACAGGAGATGGAGCCCTT
CGAAAAGATTGAAGGGAGGGATGGACAGAGTGAAGGAAGAGGGGAAGGAG
GAAGGAGTTTCTCAGGTGAATCAAAATTTTTCGTGGTCATGATCGAGACG
GAGAGAAAGAGAGTGAGGGAGAGAGGAAGAAAGATCGAGGGACATCCATA
CCTCCGGGAGAAACGGCTCCCAGTACGTTAAGGGTGCCTCCGTGAGATAC
GCCGCATCCTTCCTGGTCGACCACAGCAAGGCCATCCTCCCCGTGCGCTC
TTCGGTCACCATCACACGTACACACAACTGAGACTCAAACTCCGGCATAT
GGCTCCGAGAGAAAAAATCCTCCATCGACGTGAATCGCCGCCTGAGCGGA
TCGCGAGAAGCCGCTGAAAACGGAGCACCGCGAACTTCCCTCCTTTCCTT
ACCCCCCATCCGGAGGGACGTGAAGCCTCCCTGTTGATCGATCTGGACCC
GGATAGGCCCCGAGGCCGAGAGCATCCGGAGGCCGTCCATGGCGTCCCAC
ACCTCGAACGACAAACTGAAGCCATCCTCCAGAGCCTCCCCCATCCAAGC
CCGTCGGTGCAAAAGACAGTGGCCGTACTTCACCAAGTAGGCCCGGTACT
CCCCCTGCTCCTCCTCCCTCCCCCCCTCCCTTCCTCCCTCCCCCCTTCCC
TCCTTCCCTCGCTGCTGCCGGCGTGGTACCCCCAATACTGGCAGCAAACC
CGTC
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protein sequence of jgi.p|Nanoce1779_2|602676

>mRNA_8160-protein ID=mRNA_8160-protein|Name=jgi.p|Nanoce1779_2|602676|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MPRSAFFFYFFHLLKEKEILEAKCAALNLVSIVIRFVCVCVCQAFPPIRR
YRLCFFYCSLSFYTLLLPYFLSLLVSTLSSRFPTCPHHNHCLRTSPLSAL
FSLSPLLHLLFLPLFIFILFQFASRSGLFPSHESSPPAFFITSDSSSRHI
RIDKQIHGRARGRKRGREASRWGGRE*
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mRNA from alignment at scaffold_25:301268..303334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8160 ID=mRNA_8160|Name=jgi.p|Nanoce1779_2|602676|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at scaffold_25:301268..303334- (Nannochloropsis oceanica)
TAATTTCTTCCGTTCAGTTTCTTGTTTTTTTTTCTTGGCTTATGGAACTG
TGTGTCCCTTTCTCTCACGGTCACTCACTCTCACTCGTTGTCGTTTCCAC
TCAAGTGCATTCTTTTTCGCTCTGTCTCGTGATTTCAAACAGACGGACAG
CCGGCTTGAAAGTGGGCTGAAAGAAGGACTTTGCTAGCTCCTCAAGACTG
ATTATTTGGTATCTATCTGTATAAATAAGTATGAAATCTTGAGGACAATT
CCATGTTCATTTTTGTGTCTCCGACCGCTTTTATTTATCACACACACTTT
TTCCAATTCAAGTGTCACATGCTCCTTCCCTATCTCTCCACATGCCAAGA
TCTGCTTTCTTCTTCTATTTCTTCCATCTCCTGAAAGAGAAGGAGATCCT
CGAGGCAAAATGCGCTGCGCTGAATCTTGTGTCGATTGTTATAAGGTTTG
TGTGTGTGTGTGTGTGCCAGGCTTTCCCACCTATCCGACGCTATCGCTTG
TGCTTCTTCTACTGTTCACTCTCTTTCTACACCCTCCTCCTTCCATATTT
CCTTTCCCTCCTTGTATCCACTCTCTCTTCGCGCTTTCCCACTTGCCCTC
ACCACAATCATTGCCTTAGAACTAGTCCACTCAGTGCCTTGTTTTCCCTT
TCCCCCCTTCTCCATCTTCTTTTTCTTCCTCTTTTTATCTTTATTTTATT
TCAATTCGCTTCTCGCTCTGGGCTTTTCCCCAGCCATGAATCATCCCCCC
CCGCTTTTTTCATCACCTCTGATTCTTCGTCCCGCCACATACGCATAGAC
AAACAGATACACGGACGCGCTCGGGGCAGGAAAAGAGGAAGGGAGGCAAG
CAGATGGGGAGGGAGGGAGTGAGGGGGCAACCTCCCTTCAACTACCCCTC
CCTCAACAAGCTCCTGAAGAACTGATGGATGCCATTCGTATTCAGCGTCA
TGAATGTGACCGAGATGTAACTCTGATGGTCCTCGTACCTCTCGACATCT
CCCCCCGCAAGGCGGTACAGCTTCTCCTTCTCCGCCTCGCCCTCCTCTTG
CTCGGCTTGCTGCCCTCCCTCCCTCCCCTCTTCCCCCTCGGCCTCTTCGG
GGCAGATGTGGAAGCCGATGGTGACGGTCATGCTCTCCCCGTCGTAAGAG
GGGCACATCAAGGGAGACCAGTGGTCGAGAAAACAGGAGATGGAGCCCTT
CGAAAAGATTGAAGGGAGGGATGGACAGAGTGAAGGAAGAGGGGAAGGAG
GAAGGAGTTTCTCAGGTGAATCAAAATTTTTCGTGGTCATGATCGAGACG
GAGAGAAAGAGAGTGAGGGAGAGAGGAAGAAAGATCGAGGGACATCCATA
CCTCCGGGAGAAACGGCTCCCAGTACGTTAAGGGTGCCTCCGTGAGATAC
GCCGCATCCTTCCTGGTCGACCACAGCAAGGCCATCCTCCCCGTGCGCTC
TTCGGTCACCATCACACGTACACACAACTGAGACTCAAACTCCGGCATAT
GGCTCCGAGAGAAAAAATCCTCCATCGACGTGAATCGCCGCCTGAGCGGA
TCGCGAGAAGCCGCTGAAAACGGAGCACCGCGAACTTCCCTCCTTTCCTT
ACCCCCCATCCGGAGGGACGTGAAGCCTCCCTGTTGATCGATCTGGACCC
GGATAGGCCCCGAGGCCGAGAGCATCCGGAGGCCGTCCTGAGGGAGGGGG
GCAAGGAGGGAGGGAGGGAAGGAAAGAAAGAGGACGAGGCGGGCGTGAGA
ACATGTTTTCACTGTTGGAAAAAGGAGGAAGAGTGGGAGGTAAGGAAAGA
GGATACGGCAGGGTCTATGTATCATCATACGGGATGTGAATTCCACGTAC
CATGGCGTCCCACACCTCGAACGACAAACTGAAGCCATCCTCCAGAGCCT
CCCCCATCCAAGCCCGTCGGTGCAAAAGACAGTGGCCGTACTTCACCAAG
TAGGCCCGGTACTCCCCCTGCTCCTCCTCCCTCCCCCCCTCCCTTCCTCC
CTCCCCCCTTCCCTCCTTCCCTCGCTGCTGCCGGCGTGGTACCCCCAATA
CTGGCAGCAAACCCGTC
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Coding sequence (CDS) from alignment at scaffold_25:301268..303334-

>mRNA_8160 ID=mRNA_8160|Name=jgi.p|Nanoce1779_2|602676|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_25:301268..303334- (Nannochloropsis oceanica)
ATGCCAAGATCTGCTTTCTTCTTCTATTTCTTCCATCTCCTGAAAGAGAA
GGAGATCCTCGAGGCAAAATGCGCTGCGCTGAATCTTGTGTCGATTGTTA
TAAGGTTTGTGTGTGTGTGTGTGTGCCAGGCTTTCCCACCTATCCGACGC
TATCGCTTGTGCTTCTTCTACTGTTCACTCTCTTTCTACACCCTCCTCCT
TCCATATTTCCTTTCCCTCCTTGTATCCACTCTCTCTTCGCGCTTTCCCA
CTTGCCCTCACCACAATCATTGCCTTAGAACTAGTCCACTCAGTGCCTTG
TTTTCCCTTTCCCCCCTTCTCCATCTTCTTTTTCTTCCTCTTTTTATCTT
TATTTTATTTCAATTCGCTTCTCGCTCTGGGCTTTTCCCCAGCCATGAAT
CATCCCCCCCCGCTTTTTTCATCACCTCTGATTCTTCGTCCCGCCACATA
CGCATAGACAAACAGATACACGGACGCGCTCGGGGCAGGAAAAGAGGAAG
GGAGGCAAGCAGATGGGGAGGGAGGGAGTGA
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Synonyms
Publications