jgi.p|Nanoce1779_2|602677, mRNA_8159 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602677
Unique Name	mRNA_8159
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1750
Alignment location	scaffold_25:301268..303334 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602763
Track	FilteredModels2
ProteinId	602677

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:301268..303334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602677	gene_8159	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602677	mRNA_8159-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8159	CDS_8159	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:301268..303334+
coding sequence from alignment at scaffold_25:301268..303334+

mRNA sequence

>mRNA_8159 ID=mRNA_8159|Name=jgi.p|Nanoce1779_2|602677|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
GACGGGTTTGCTGCCAGTATTGGGGGTACCACGCCGGCAGCAGCGAGGGA
AGGAGGGAAGGGGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGAGGAGCAG
GGGGAGTACCGGGCCTACTTGGTGAAGTACGGCCACTGTCTTTTGCACCG
ACGGGCTTGGATGGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCG
AGGTGTGGGACGCCATGGACGGCCTCCGGATGCTCTCGGCCTCGGGGCCT
ATCCGGGTCCAGATCGATCAACAGGGAGGCTTCACGTCCCTCCGGATGGG
GGGTAAGGAAAGGAGGGAAGTTCGCGGTGCTCCGTTTTCAGCGGCTTCTC
GCGATCCGCTCAGGCGGCGATTCACGTCGATGGAGGATTTTTTCTCTCGG
AGCCATATGCCGGAGTTTGAGTCTCAGTTGTGTGTACGTGTGATGGTGAC
CGAAGAGCGCACGGGGAGGATGGCCTTGCTGTGGTCGACCAGGAAGGATG
CGGCGTATCTCACGGAGGCACCCTTAACGTACTGGGAGCCGTTTCTCCCG
GAGGGCTCCATCTCCTGTTTTCTCGACCACTGGTCTCCCTTGATGTGCCC
CTCTTACGACGGGGAGAGCATGACCGTCACCATCGGCTTCCACATCTGCC
CCGAAGAGGCCGAGGGGGAAGAGGGGAGGGAGGGAGGGCAGCAAGCCGAG
CAAGAGGAGGGCGAGGCGGAGAAGGAGAAGCTGTACCGCCTTGCGGGGGG
AGATGTCGAGAGGTACGAGGACCATCAGAGTTACATCTCGGTCACATTCA
TGACGCTGAATACGAATGGCATCCATCAGTTCTTCAGGAGCTTGTTGAGG
GAGGGGTAGTTGAAGGGAGGTTGCCCCCTCACTCCCTCCCTCCCCATCTG
CTTGCCTCCCTTCCTCTTTTCCTGCCCCGAGCGCGTCCGTGTATCTGTTT
GTCTATGCGTATGTGGCGGGACGAAGAATCAGAGGTGATGAAAAAAGCGG
GGGGGGATGATTCATGGCTGGGGAAAAGCCCAGAGCGAGAAGCGAATTGA
AATAAAATAAAGATAAAAAGAGGAAGAAAAAGAAGATGGAGAAGGGGGGA
AAGGGAAAACAAGGCACTGAGTGGACTAGTTCTAAGGCAATGATTGTGGT
GAGGGCAAGTGGGAAAGCGCGAAGAGAGAGTGGATACAAGGAGGGAAAGG
AAATATGGAAGGAGGAGGGTGTAGAAAGAGAGTGAACAGTAGAAGAAGCA
CAAGCGATAGCGTCGGATAGGTGGGAAAGCCTGGCACACACACACACACA
CAAACCTTATAACAATCGACACAAGATTCAGCGCAGCGCATTTTGCCTCG
AGGATCTCCTTCTCTTTCAGGAGATGGAAGAAATAGAAGAAGAAAGCAGA
TCTTGGCATGTGGAGAGATAGGGAAGGAGCATGTGACACTTGAATTGGAA
AAAGTGTGTGTGATAAATAAAAGCGGTCGGAGACACAAAAATGAACATGG
AATTGTCCTCAAGATTTCATACTTATTTATACAGATAGATACCAAATAAT
CAGTCTTGAGGAGCTAGCAAAGTCCTTCTTTCAGCCCACTTTCAAGCCGG
CTGTCCGTCTGTTTGAAATCACGAGACAGAGCGAAAAAGAATGCACTTGA
GTGGAAACGACAACGAGTGAGAGTGAGTGACCGTGAGAGAAAGGGACACA
CAGTTCCATAAGCCAAGAAAAAAAAACAAGAAACTGAACGGAAGAAATTA

protein sequence of jgi.p|Nanoce1779_2|602677

>mRNA_8159-protein ID=mRNA_8159-protein|Name=jgi.p|Nanoce1779_2|602677|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQIDQQGGFTSLRMGGKE
RREVRGAPFSAASRDPLRRRFTSMEDFFSRSHMPEFESQLCVRVMVTEER
TGRMALLWSTRKDAAYLTEAPLTYWEPFLPEGSISCFLDHWSPLMCPSYD
GESMTVTIGFHICPEEAEGEEGREGGQQAEQEEGEAEKEKLYRLAGGDVE
RYEDHQSYISVTFMTLNTNGIHQFFRSLLREG*

mRNA from alignment at scaffold_25:301268..303334+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8159 ID=mRNA_8159|Name=jgi.p|Nanoce1779_2|602677|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp|location=Sequence derived from alignment at scaffold_25:301268..303334+ (Nannochloropsis oceanica)
GACGGGTTTGCTGCCAGTATTGGGGGTACCACGCCGGCAGCAGCGAGGGA
AGGAGGGAAGGGGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGAGGAGCAG
GGGGAGTACCGGGCCTACTTGGTGAAGTACGGCCACTGTCTTTTGCACCG
ACGGGCTTGGATGGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCG
AGGTGTGGGACGCCATGGTACGTGGAATTCACATCCCGTATGATGATACA
TAGACCCTGCCGTATCCTCTTTCCTTACCTCCCACTCTTCCTCCTTTTTC
CAACAGTGAAAACATGTTCTCACGCCCGCCTCGTCCTCTTTCTTTCCTTC
CCTCCCTCCCTCCTTGCCCCCCTCCCTCAGGACGGCCTCCGGATGCTCTC
GGCCTCGGGGCCTATCCGGGTCCAGATCGATCAACAGGGAGGCTTCACGT
CCCTCCGGATGGGGGGTAAGGAAAGGAGGGAAGTTCGCGGTGCTCCGTTT
TCAGCGGCTTCTCGCGATCCGCTCAGGCGGCGATTCACGTCGATGGAGGA
TTTTTTCTCTCGGAGCCATATGCCGGAGTTTGAGTCTCAGTTGTGTGTAC
GTGTGATGGTGACCGAAGAGCGCACGGGGAGGATGGCCTTGCTGTGGTCG
ACCAGGAAGGATGCGGCGTATCTCACGGAGGCACCCTTAACGTACTGGGA
GCCGTTTCTCCCGGAGGTATGGATGTCCCTCGATCTTTCTTCCTCTCTCC
CTCACTCTCTTTCTCTCCGTCTCGATCATGACCACGAAAAATTTTGATTC
ACCTGAGAAACTCCTTCCTCCTTCCCCTCTTCCTTCACTCTGTCCATCCC
TCCCTTCAATCTTTTCGAAGGGCTCCATCTCCTGTTTTCTCGACCACTGG
TCTCCCTTGATGTGCCCCTCTTACGACGGGGAGAGCATGACCGTCACCAT
CGGCTTCCACATCTGCCCCGAAGAGGCCGAGGGGGAAGAGGGGAGGGAGG
GAGGGCAGCAAGCCGAGCAAGAGGAGGGCGAGGCGGAGAAGGAGAAGCTG
TACCGCCTTGCGGGGGGAGATGTCGAGAGGTACGAGGACCATCAGAGTTA
CATCTCGGTCACATTCATGACGCTGAATACGAATGGCATCCATCAGTTCT
TCAGGAGCTTGTTGAGGGAGGGGTAGTTGAAGGGAGGTTGCCCCCTCACT
CCCTCCCTCCCCATCTGCTTGCCTCCCTTCCTCTTTTCCTGCCCCGAGCG
CGTCCGTGTATCTGTTTGTCTATGCGTATGTGGCGGGACGAAGAATCAGA
GGTGATGAAAAAAGCGGGGGGGGATGATTCATGGCTGGGGAAAAGCCCAG
AGCGAGAAGCGAATTGAAATAAAATAAAGATAAAAAGAGGAAGAAAAAGA
AGATGGAGAAGGGGGGAAAGGGAAAACAAGGCACTGAGTGGACTAGTTCT
AAGGCAATGATTGTGGTGAGGGCAAGTGGGAAAGCGCGAAGAGAGAGTGG
ATACAAGGAGGGAAAGGAAATATGGAAGGAGGAGGGTGTAGAAAGAGAGT
GAACAGTAGAAGAAGCACAAGCGATAGCGTCGGATAGGTGGGAAAGCCTG
GCACACACACACACACACAAACCTTATAACAATCGACACAAGATTCAGCG
CAGCGCATTTTGCCTCGAGGATCTCCTTCTCTTTCAGGAGATGGAAGAAA
TAGAAGAAGAAAGCAGATCTTGGCATGTGGAGAGATAGGGAAGGAGCATG
TGACACTTGAATTGGAAAAAGTGTGTGTGATAAATAAAAGCGGTCGGAGA
CACAAAAATGAACATGGAATTGTCCTCAAGATTTCATACTTATTTATACA
GATAGATACCAAATAATCAGTCTTGAGGAGCTAGCAAAGTCCTTCTTTCA
GCCCACTTTCAAGCCGGCTGTCCGTCTGTTTGAAATCACGAGACAGAGCG
AAAAAGAATGCACTTGAGTGGAAACGACAACGAGTGAGAGTGAGTGACCG
TGAGAGAAAGGGACACACAGTTCCATAAGCCAAGAAAAAAAAACAAGAAA
CTGAACGGAAGAAATTA

Coding sequence (CDS) from alignment at scaffold_25:301268..303334+

>mRNA_8159 ID=mRNA_8159|Name=jgi.p|Nanoce1779_2|602677|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at scaffold_25:301268..303334+ (Nannochloropsis oceanica)
ATGGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCGAGGTGTGGGA
CGCCATGGACGGCCTCCGGATGCTCTCGGCCTCGGGGCCTATCCGGGTCC
AGATCGATCAACAGGGAGGCTTCACGTCCCTCCGGATGGGGGGTAAGGAA
AGGAGGGAAGTTCGCGGTGCTCCGTTTTCAGCGGCTTCTCGCGATCCGCT
CAGGCGGCGATTCACGTCGATGGAGGATTTTTTCTCTCGGAGCCATATGC
CGGAGTTTGAGTCTCAGTTGTGTGTACGTGTGATGGTGACCGAAGAGCGC
ACGGGGAGGATGGCCTTGCTGTGGTCGACCAGGAAGGATGCGGCGTATCT
CACGGAGGCACCCTTAACGTACTGGGAGCCGTTTCTCCCGGAGGGCTCCA
TCTCCTGTTTTCTCGACCACTGGTCTCCCTTGATGTGCCCCTCTTACGAC
GGGGAGAGCATGACCGTCACCATCGGCTTCCACATCTGCCCCGAAGAGGC
CGAGGGGGAAGAGGGGAGGGAGGGAGGGCAGCAAGCCGAGCAAGAGGAGG
GCGAGGCGGAGAAGGAGAAGCTGTACCGCCTTGCGGGGGGAGATGTCGAG
AGGTACGAGGACCATCAGAGTTACATCTCGGTCACATTCATGACGCTGAA
TACGAATGGCATCCATCAGTTCTTCAGGAGCTTGTTGAGGGAGGGGTAGA
TGGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCGAGGTGTGGGAC
GCCATGGACGGCCTCCGGATGCTCTCGGCCTCGGGGCCTATCCGGGTCCA
GATCGATCAACAGGGAGGCTTCACGTCCCTCCGGATGGGGGGTAAGGAAA
GGAGGGAAGTTCGCGGTGCTCCGTTTTCAGCGGCTTCTCGCGATCCGCTC
AGGCGGCGATTCACGTCGATGGAGGATTTTTTCTCTCGGAGCCATATGCC
GGAGTTTGAGTCTCAGTTGTGTGTACGTGTGATGGTGACCGAAGAGCGCA
CGGGGAGGATGGCCTTGCTGTGGTCGACCAGGAAGGATGCGGCGTATCTC
ACGGAGGCACCCTTAACGTACTGGGAGCCGTTTCTCCCGGAGGGCTCCAT
CTCCTGTTTTCTCGACCACTGGTCTCCCTTGATGTGCCCCTCTTACGACG
GGGAGAGCATGACCGTCACCATCGGCTTCCACATCTGCCCCGAAGAGGCC
GAGGGGGAAGAGGGGAGGGAGGGAGGGCAGCAAGCCGAGCAAGAGGAGGG
CGAGGCGGAGAAGGAGAAGCTGTACCGCCTTGCGGGGGGAGATGTCGAGA
GGTACGAGGACCATCAGAGTTACATCTCGGTCACATTCATGACGCTGAAT
ACGAATGGCATCCATCAGTTCTTCAGGAGCTTGTTGAGGGAGGGGTAGAT
GGGGGAGGCTCTGGAGGATGGCTTCAGTTTGTCGTTCGAGGTGTGGGACG
CCATGGACGGCCTCCGGATGCTCTCGGCCTCGGGGCCTATCCGGGTCCAG
ATCGATCAACAGGGAGGCTTCACGTCCCTCCGGATGGGGGGTAAGGAAAG
GAGGGAAGTTCGCGGTGCTCCGTTTTCAGCGGCTTCTCGCGATCCGCTCA
GGCGGCGATTCACGTCGATGGAGGATTTTTTCTCTCGGAGCCATATGCCG
GAGTTTGAGTCTCAGTTGTGTGTACGTGTGATGGTGACCGAAGAGCGCAC
GGGGAGGATGGCCTTGCTGTGGTCGACCAGGAAGGATGCGGCGTATCTCA
CGGAGGCACCCTTAACGTACTGGGAGCCGTTTCTCCCGGAGGGCTCCATC
TCCTGTTTTCTCGACCACTGGTCTCCCTTGATGTGCCCCTCTTACGACGG
GGAGAGCATGACCGTCACCATCGGCTTCCACATCTGCCCCGAAGAGGCCG
AGGGGGAAGAGGGGAGGGAGGGAGGGCAGCAAGCCGAGCAAGAGGAGGGC
GAGGCGGAGAAGGAGAAGCTGTACCGCCTTGCGGGGGGAGATGTCGAGAG
GTACGAGGACCATCAGAGTTACATCTCGGTCACATTCATGACGCTGAATA
CGAATGGCATCCATCAGTTCTTCAGGAGCTTGTTGAGGGAGGGGTAG

Synonyms

Publications