jgi.p|Nanoce1779_2|602674, mRNA_8158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602674
Unique NamemRNA_8158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length542
Alignment locationscaffold_25:299403..300150 -

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Properties
Property NameValue
TranscriptId602760
TrackFilteredModels2
ProteinId602674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:299403..300150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602674gene_8158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602674mRNA_8158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8158CDS_8158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Nanoce1779_2|602674|organism=Nannochloropsis oceanica|type=mRNA|length=542bp
TGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTG
ATGCTACTGCTGCTGCTGCAGCAGCCGTGATGGTTGTGGAAAGATGATTG
CTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCCGTAAAGAGTTGTCCT
CTTCACTGCTTTCCTGCAAAATGCTGTTCAACGCAGAGACTAGCTGCCGA
AGACGGGCATGTGTCATGCCGACTAATCCATTGCTGCTGGGGATAGAAGA
GGCGGGAGGGTATGATGCTGCTGTTGCTGCTGCAACAGCTGCTACAGGAG
GAAATGGGGAAGCTGCTGCAGTTTTTGAGCCCGCGTCTCCTTTCTCGGCC
TTTGGGTGGGTGTAATTTGAGGCAGTGCTGTGTATTACCGGTAGCTCGGT
ATCCATTAGACCGCTTTTTTGAGATGAGGCTTGCAGACGCAGAAGCTGCC
TTAGTTCTTCGGCATTGGAAGGCACAAGCTCCAAAAATGAAAGCAGTTGC
TCGGCCTGTCCGCGCTTGTCCCCCTCATCATCCATAGCAGTC
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protein sequence of jgi.p|Nanoce1779_2|602674

>mRNA_8158-protein ID=mRNA_8158-protein|Name=jgi.p|Nanoce1779_2|602674|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MMLLLLLQQLLQEEMGKLLQFLSPRLLSRPLGGCNLRQCCVLPVARYPLD
RFFEMRLADAEAALVLRHWKAQAPKMKAVARPVRACPPHHP*
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mRNA from alignment at scaffold_25:299403..300150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Nanoce1779_2|602674|organism=Nannochloropsis oceanica|type=mRNA|length=748bp|location=Sequence derived from alignment at scaffold_25:299403..300150- (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTG
ATGCTACTGCTGCTGCTGCAGCAGCCGTGATGGTTGTGGAAAGATGATTG
CTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCCGTAAAGAGTTGTCCT
CTTCACTGCTTTCCTGCAAAATGCTGTTCAACGCAGAGACTAGCTGCCGA
AGACGGGCATGTGTCATGCCGACTAATCCATTGCTGCTGGGGATAGAAGA
GGCGGGAGGGTATGATGCTGCTGTTGCTGCTGCAACAGCTGCTACAGGAG
GAAATGGGGAAGCTGCTGCAGTTTTTGAGCCCGCGTCTCCTTTCTCGGCC
TTTGGGTGGGTGTAATTTGAGGCAGTGCTGTGTATTACCGGTAGCTCGGT
ATCCATTAGACCGCTTTTTTGAGATGAGGCTTGCAGACGCAGAAGCTGCC
TTAGTTCTGTATGAAGGTCAGTGTATGTGCAAGAAGGATAAATGTGGATA
GGCGAGAGAGTCGGAAGGACTGAAAAAAGGGCTGGCATACTCAAAAGAGG
CGCCTTATCTCACATCTTTTTCACTTGTGCATGCATGTACATTTTCCCAT
AGATCCGCCCGAATACAAGCATAAGCCAATTCGGAATGGGCGGCATATCA
ACACTTGCGTACCTTCGGCATTGGAAGGCACAAGCTCCAAAAATGAAAGC
AGTTGCTCGGCCTGTCCGCGCTTGTCCCCCTCATCATCCATAGCAGTC
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Coding sequence (CDS) from alignment at scaffold_25:299403..300150-

>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Nanoce1779_2|602674|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_25:299403..300150- (Nannochloropsis oceanica)
CTTCGGCATTGGAAGGCACAAGCTCCAAAAATGAAAGCAGTTGCTCGGCC
TGTCCGCGCTTGTCCCCCTCATCATCCATAGATGATGCTGCTGTTGCTGC
TGCAACAGCTGCTACAGGAGGAAATGGGGAAGCTGCTGCAGTTTTTGAGC
CCGCGTCTCCTTTCTCGGCCTTTGGGTGGGTGTAATTTGAGGCAGTGCTG
TGTATTACCGGTAGCTCGGTATCCATTAGACCGCTTTTTTGAGATGAGGC
TTGCAGACGCAGAAGCTGCCTTAGTTCTTCGGCATTGGAAGGCACAAGCT
CCAAAAATGAAAGCAGTTGCTCGGCCTGTCCGCGCTTGTCCCCCTCATCA
TCCATAGATGATGCTGCTGTTGCTGCTGCAACAGCTGCTACAGGAGGAAA
TGGGGAAGCTGCTGCAGTTTTTGAGCCCGCGTCTCCTTTCTCGGCCTTTG
GGTGGGTGTAATTTGAGGCAGTGCTGTGTATTACCGGTAGCTCGGTATCC
ATTAGACCGCTTTTTTGAGATGAGGCTTGCAGACGCAGAAGCTGCCTTAG
TT
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Synonyms
Publications