jgi.p|Nanoce1779_2|203528, mRNA_8157 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|203528
Unique Name	mRNA_8157
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2016
Alignment location	scaffold_25:297118..299378 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	203614
Track	FilteredModels2
ProteinId	203528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:297118..299378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203528	gene_8157	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203528	mRNA_8157-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8157	CDS_8157	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:297118..299378-
coding sequence from alignment at scaffold_25:297118..299378-

mRNA sequence

>mRNA_8157 ID=mRNA_8157|Name=jgi.p|Nanoce1779_2|203528|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATGCGATTGGTTTGGGCGTGGGTGAGCAGTGTGAAGGGGGGTGATGTTGG
ATACTTTTACTGTTACTGTTGCACATATATGCATCCCAAGGTGTTTTGAC
ATACTTCAGCAAGCATCCCCTCAGCAAGCAAGGGAAGTGGCATAATTTCC
ACAGTCACAAGTAGCATGCTGTGGTAAGATAGGAGCTGCGTGATGCGCCA
TTGGCCTCATAGATGCATGACAACAGAGGCGCATGACTGCTTTGGTGATA
ATTCAAGAGCAGCCTGAAAAGCTACTTGGGCCGAGTGCGAGAGACTAGAG
ATTGGACGTTCTCGCGCCGCAAATTGTCTGGCAAGTGCCCTCTGGGCCTC
CTCCCGCTATCTCACTTGCCGCACTCACCCATCTCCATCCGCAAACTCTT
AACCACAAGAAGGAGCTCTGGCAGCGCCGAAGAAAAGACGTGGACGCACG
CGTAAAGAGAGGTACACTTATTAAAAACCTCCCCGAGCGGTCGACTCCTA
CTCGTGCGGCTCCGCCACCGCCGCACAACACAACGCACCGGCATATACTA
CCAGCGTAAACTATGGACTGGAAGTCATGGGCCTTCTTTTGCCTGTCCCG
TTCCACGAGCGGTGGCAGCTTCGGTTACGGCGGCTTTCCAGGTGGCGCAG
GTGGCTTCTACCGCCCTGGCGGCGGTGGCAGCGGTGCTGGCGAAGGAGCA
AATAATGAAGAATATTATTCTATCCTAGGCATTCCTAAAACGAGTACCTT
GACCGAAGTGAAACGCGCGTACCGTCATAAAGTTGTGAAACTTCACCCTG
ATAAAGGAGGGGACGAGAAACAATTCAAGGCCTTGCAAGAAGCGTATGAA
GTCTTGTCTGACCCGGCCAAAAGAAGATTATACGACACCTACGGCAAGGC
AGGTGTTGAGGCAGGGGCCGGGGGAGGAAGGGGTGGCCCAAGCCCGGAAG
ATATTTTCTCGTCATTTTTTGGGAGGGGGCGACCAGGACAAGGGGGAGGA
GGAGGACCCCGGAGGAGCCCCAATTTGTTTTTACAGGTCGATTTGACATT
GGAAGAGCTATACAAAGGAACGAGTAGGAAAGTTAAATTGAATAGACAAA
AAGTGGTGGAGAAACGGATTGTGCTGGAGCCCAAGATTTTGGAAGCGGCC
TTTGAGAGGGGCATGAAAGATGGAGGGAGGGTGGTCTTGGCGGGGGAGGC
GGAGGGGCTTGGAAACACGGTACCAGGCGACATTATTATTCAAGTGCGGG
AGCTCAAACACCCTACCTTTGTGCGGCGTAACGCTGATCTCCTTTGTGAG
ATGAAAGTCTCTCTGACAGAAGCCTTGACTGGCTTTGAACGGCCCCTGCG
TCACTTGGACGGAAGGCAGCTTTGGGTCAAGGGGAAGGCGGGGCAGGTGA
CCAGGCCGGGGAGTGTGTGGATCTTGGAGGGAGAGGGTATGCCCCTGCAG
GGTGAGCCCTCCTCACATGGCCGCCTGTTCATAAAATTCTCGGTGGAATT
TCCGGTTAGTCTGGCTAAGATGAGTAAGGAGGAAGTCGAGAGGTTGAAGG
AGATCTTGCCGAAAGCCCCGGTGTTTGTGAAAGGGGAGAAAGCGGAGGAA
GCGCCTGTGCTGAAGGCTGGTGATCCTCGTTCTTTTGGCACGGTGGGGTC
AGGGAGAGGAGGAGGGGAGAGGGCGTGGGAGGAGGAGGAGGACGAGGATG
AGGAAGATGCGGGGATGGGCTTTGGAGGGTACGGGGGAATGCCGAGGGGA
GAGCAGGTGCAGTGCTCGCAACAGTAGGAGAAGGAGCGAGAGGGGGTGCC
CTCGTAGAAAGGGAGGAAGGTCGCATGCGTAAGCGCAAGTGTGCTGCCCT
TCCATGGACAGAGGAAAACCAAAGTAAAATCGAAGAAAGAGAGTGTGCAT
GTACACTACCGGGAGGATCCTACCACGAAATAAAAATATCAGCCACGGAA
TTGAAAGAGGGCATCAAAATCATCAAGCAACCACCTGAAAGCTTCCATCC
TGCATCCCTTTTTCGC

protein sequence of jgi.p|Nanoce1779_2|203528

>mRNA_8157-protein ID=mRNA_8157-protein|Name=jgi.p|Nanoce1779_2|203528|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MDWKSWAFFCLSRSTSGGSFGYGGFPGGAGGFYRPGGGGSGAGEGANNEE
YYSILGIPKTSTLTEVKRAYRHKVVKLHPDKGGDEKQFKALQEAYEVLSD
PAKRRLYDTYGKAGVEAGAGGGRGGPSPEDIFSSFFGRGRPGQGGGGGPR
RSPNLFLQVDLTLEELYKGTSRKVKLNRQKVVEKRIVLEPKILEAAFERG
MKDGGRVVLAGEAEGLGNTVPGDIIIQVRELKHPTFVRRNADLLCEMKVS
LTEALTGFERPLRHLDGRQLWVKGKAGQVTRPGSVWILEGEGMPLQGEPS
SHGRLFIKFSVEFPVSLAKMSKEEVERLKEILPKAPVFVKGEKAEEAPVL
KAGDPRSFGTVGSGRGGGERAWEEEEDEDEEDAGMGFGGYGGMPRGEQVQ
CSQQ*

mRNA from alignment at scaffold_25:297118..299378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8157 ID=mRNA_8157|Name=jgi.p|Nanoce1779_2|203528|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at scaffold_25:297118..299378- (Nannochloropsis oceanica)
ATGCGATTGGTTTGGGCGTGGGTGAGCAGTGTGAAGGGGGGTGATGTTGG
ATACTTTTACTGTTACTGTTGCACATATATGCATCCCAAGGTGTTTTGAC
ATACTTCAGCAAGCATCCCCTCAGCAAGCAAGGGAAGTGGCATAATTTCC
ACAGTCACAAGTAGCATGCTGTGGTAAGATAGGAGCTGCGTGATGCGCCA
TTGGCCTCATAGATGCATGACAACAGAGGCGCATGACTGCTTTGGTGATA
ATTCAAGAGCAGCCTGAAAAGCTACTTGGGCCGAGTGCGAGAGACTAGAG
ATTGGACGTTCTCGCGCCGCAAATTGTCTGGCAAGTGCCCTCTGGGCCTC
CTCCCGCTATCTCACTTGCCGCACTCACCCATCTCCATCCGCAAACTCTT
AACCACAAGAAGGAGCTCTGGCAGCGCCGAAGAAAAGACGTGGACGCACG
CGTAAAGAGAGGTACACTTATTAAAAACCTCCCCGAGCGGTCGACTCCTA
CTCGTGCGGCTCCGCCACCGCCGCACAACACAACGCACCGGCATATACTA
CCAGCGTAAACTATGGACTGGAAGTCATGGGCCTTCTTTTGCCTGGTACT
GTGCGTTTTCTTCGTCTCGGCGGCCTCGTTTGATTTTTTCCAAGTAAGGA
TCTGTGTGTGCTGAGCTGTGGGTGCGTGGGGGTCATGCGGTGGCATCCTT
GTGTGTATGGGACTTGCCCGTGTCCATCGCCATCCGTCATAGTTGCTATA
CATACATTTTCCTTTCTGCTTTCTTCTCACTCTCCCTTCACTCATAAATA
TCCTCCCTCTCCCTGCTCTTCCCCAAATCCTCTTGCACAGTCCCGTTCCA
CGAGCGGTGGCAGCTTCGGTTACGGCGGCTTTCCAGGTGGCGCAGGTGGC
TTCTACCGCCCTGGCGGCGGTGGCAGCGGTGCTGGCGAAGGAGCAAATAA
TGAAGAATATTATTCTATCCTAGGCATTCCTAAAACGAGTACCTTGACCG
AAGTGAAACGCGCGTACCGTCATAAAGTTGTGAAACTTCACCCTGATAAA
GGAGGGGACGAGAAACAATTCAAGGCCTTGCAAGAAGCGTATGAAGTCTT
GTCTGACCCGGCCAAAAGAAGATTATACGACACCTACGGCAAGGCAGGTG
TTGAGGCAGGGGCCGGGGGAGGAAGGGGTGGCCCAAGCCCGGAAGATATT
TTCTCGTCATTTTTTGGGAGGGGGCGACCAGGACAAGGGGGAGGAGGAGG
ACCCCGGAGGAGCCCCAATTTGTTTTTACAGGTCGATTTGACATTGGAAG
AGCTATACAAAGGAACGAGTAGGAAAGTTAAATTGAATAGACAAAAAGTG
GTGGAGAAACGGATTGTGCTGGAGCCCAAGATTTTGGAAGCGGCCTTTGA
GAGGGGCATGAAAGATGGAGGGAGGGTGGTCTTGGCGGGGGAGGCGGAGG
GGCTTGGAAACACGGTACCAGGCGACATTATTATTCAAGTGCGGGAGCTC
AAACACCCTACCTTTGTGCGGCGTAACGCTGATCTCCTTTGTGAGATGAA
AGTCTCTCTGACAGAAGCCTTGACTGGCTTTGAACGGCCCCTGCGTCACT
TGGACGGAAGGCAGCTTTGGGTCAAGGGGAAGGCGGGGCAGGTGACCAGG
CCGGGGAGTGTGTGGATCTTGGAGGGAGAGGGTATGCCCCTGCAGGGTGA
GCCCTCCTCACATGGCCGCCTGTTCATAAAATTCTCGGTGGAATTTCCGG
TTAGTCTGGCTAAGATGAGTAAGGAGGAAGTCGAGAGGTTGAAGGAGATC
TTGCCGAAAGCCCCGGTGTTTGTGAAAGGGGAGAAAGCGGAGGAAGCGCC
TGTGCTGAAGGCTGGTGATCCTCGTTCTTTTGGCACGGTGGGGTCAGGGA
GAGGAGGAGGGGAGAGGGCGTGGGAGGAGGAGGAGGACGAGGATGAGGAA
GATGCGGGGATGGGCTTTGGAGGGTACGGGGGAATGCCGAGGGGAGAGCA
GGTGCAGTGCTCGCAACAGTAGGAGAAGGAGCGAGAGGGGGTGCCCTCGT
AGAAAGGGAGGAAGGTCGCATGCGTAAGCGCAAGTGTGCTGCCCTTCCAT
GGACAGAGGAAAACCAAAGTAAAATCGAAGAAAGAGAGTGTGCATGTACA
CTACCGGGAGGATCCTACCACGAAATAAAAATATCAGCCACGGAATTGAA
AGAGGGCATCAAAATCATCAAGCAACCACCTGAAAGCTTCCATCCTGCAT
CCCTTTTTCGC

Coding sequence (CDS) from alignment at scaffold_25:297118..299378-

>mRNA_8157 ID=mRNA_8157|Name=jgi.p|Nanoce1779_2|203528|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_25:297118..299378- (Nannochloropsis oceanica)
TCCCGTTCCACGAGCGGTGGCAGCTTCGGTTACGGCGGCTTTCCAGGTGG
CGCAGGTGGCTTCTACCGCCCTGGCGGCGGTGGCAGCGGTGCTGGCGAAG
GAGCAAATAATGAAGAATATTATTCTATCCTAGGCATTCCTAAAACGAGT
ACCTTGACCGAAGTGAAACGCGCGTACCGTCATAAAGTTGTGAAACTTCA
CCCTGATAAAGGAGGGGACGAGAAACAATTCAAGGCCTTGCAAGAAGCGT
ATGAAGTCTTGTCTGACCCGGCCAAAAGAAGATTATACGACACCTACGGC
AAGGCAGGTGTTGAGGCAGGGGCCGGGGGAGGAAGGGGTGGCCCAAGCCC
GGAAGATATTTTCTCGTCATTTTTTGGGAGGGGGCGACCAGGACAAGGGG
GAGGAGGAGGACCCCGGAGGAGCCCCAATTTGTTTTTACAGGTCGATTTG
ACATTGGAAGAGCTATACAAAGGAACGAGTAGGAAAGTTAAATTGAATAG
ACAAAAAGTGGTGGAGAAACGGATTGTGCTGGAGCCCAAGATTTTGGAAG
CGGCCTTTGAGAGGGGCATGAAAGATGGAGGGAGGGTGGTCTTGGCGGGG
GAGGCGGAGGGGCTTGGAAACACGGTACCAGGCGACATTATTATTCAAGT
GCGGGAGCTCAAACACCCTACCTTTGTGCGGCGTAACGCTGATCTCCTTT
GTGAGATGAAAGTCTCTCTGACAGAAGCCTTGACTGGCTTTGAACGGCCC
CTGCGTCACTTGGACGGAAGGCAGCTTTGGGTCAAGGGGAAGGCGGGGCA
GGTGACCAGGCCGGGGAGTGTGTGGATCTTGGAGGGAGAGGGTATGCCCC
TGCAGGGTGAGCCCTCCTCACATGGCCGCCTGTTCATAAAATTCTCGGTG
GAATTTCCGGTTAGTCTGGCTAAGATGAGTAAGGAGGAAGTCGAGAGGTT
GAAGGAGATCTTGCCGAAAGCCCCGGTGTTTGTGAAAGGGGAGAAAGCGG
AGGAAGCGCCTGTGCTGAAGGCTGGTGATCCTCGTTCTTTTGGCACGGTG
GGGTCAGGGAGAGGAGGAGGGGAGAGGGCGTGGGAGGAGGAGGAGGACGA
GGATGAGGAAGATGCGGGGATGGGCTTTGGAGGGTACGGGGGAATGCCGA
GGGGAGAGCAGGTGCAGTGCTCGCAACAGTAGATGGACTGGAAGTCATGG
GCCTTCTTTTGCCTGTCCCGTTCCACGAGCGGTGGCAGCTTCGGTTACGG
CGGCTTTCCAGGTGGCGCAGGTGGCTTCTACCGCCCTGGCGGCGGTGGCA
GCGGTGCTGGCGAAGGAGCAAATAATGAAGAATATTATTCTATCCTAGGC
ATTCCTAAAACGAGTACCTTGACCGAAGTGAAACGCGCGTACCGTCATAA
AGTTGTGAAACTTCACCCTGATAAAGGAGGGGACGAGAAACAATTCAAGG
CCTTGCAAGAAGCGTATGAAGTCTTGTCTGACCCGGCCAAAAGAAGATTA
TACGACACCTACGGCAAGGCAGGTGTTGAGGCAGGGGCCGGGGGAGGAAG
GGGTGGCCCAAGCCCGGAAGATATTTTCTCGTCATTTTTTGGGAGGGGGC
GACCAGGACAAGGGGGAGGAGGAGGACCCCGGAGGAGCCCCAATTTGTTT
TTACAGGTCGATTTGACATTGGAAGAGCTATACAAAGGAACGAGTAGGAA
AGTTAAATTGAATAGACAAAAAGTGGTGGAGAAACGGATTGTGCTGGAGC
CCAAGATTTTGGAAGCGGCCTTTGAGAGGGGCATGAAAGATGGAGGGAGG
GTGGTCTTGGCGGGGGAGGCGGAGGGGCTTGGAAACACGGTACCAGGCGA
CATTATTATTCAAGTGCGGGAGCTCAAACACCCTACCTTTGTGCGGCGTA
ACGCTGATCTCCTTTGTGAGATGAAAGTCTCTCTGACAGAAGCCTTGACT
GGCTTTGAACGGCCCCTGCGTCACTTGGACGGAAGGCAGCTTTGGGTCAA
GGGGAAGGCGGGGCAGGTGACCAGGCCGGGGAGTGTGTGGATCTTGGAGG
GAGAGGGTATGCCCCTGCAGGGTGAGCCCTCCTCACATGGCCGCCTGTTC
ATAAAATTCTCGGTGGAATTTCCGGTTAGTCTGGCTAAGATGAGTAAGGA
GGAAGTCGAGAGGTTGAAGGAGATCTTGCCGAAAGCCCCGGTGTTTGTGA
AAGGGGAGAAAGCGGAGGAAGCGCCTGTGCTGAAGGCTGGTGATCCTCGT
TCTTTTGGCACGGTGGGGTCAGGGAGAGGAGGAGGGGAGAGGGCGTGGGA
GGAGGAGGAGGACGAGGATGAGGAAGATGCGGGGATGGGCTTTGGAGGGT
ACGGGGGAATGCCGAGGGGAGAGCAGGTGCAGTGCTCGCAACAGTAGATG
GACTGGAAGTCATGGGCCTTCTTTTGCCTG

Synonyms

Publications